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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062910 ID=TCONS_00062910|Name=TCONS_00062910|organism=Clytia hemisphaerica|type=transcript|length=1762bp
CTTCAAACGTAAAGGTGAGAATGAAGAAGGTGTTCTTTGATTCTACAAAA
CAGCGAGCGTTTATTCTTTGGCCGCAAAAGATGTCTGTCAAGAAGTATGT
CATCCGGAAAACGCGAGAAATACTTTATACGGATGTTTTCCAATTGAAAA
GAAGATTACTTATCATGTCCTTCGTGTTACGTTATTTTATGATGGGAGTG
GAATATTCCATCATTTTACCGACTGCTCTCTTATACATGAAAACTTTTAA
TGCTGGCCCTTTCATGACTGGATTGACGATTGCTGCCTACCCCGTCGCTG
CTTGCATCAGCCTTCCTATCTGTGGATATTTTTACGATAGCACCAAACGA
GTAAAAGAGCTGCTCCTTATTTTGAATGGATTTGAAATTCTTGGTAATTT
AATCTACGCGCTTCCATTTTCAATGTTGTTGCCGTTACTTGGACGATTTA
TCGCTGGTATCGGTGATGGATTCCTGGCATTGACTGTCGGAGAGTTAACT
TATCTTTATGAAGAAAAACATAGACTTGGAGTGATCACTTTACTTGAGTT
CGGTCGTGTTTTGGGATTGATCGTTGGACCAAGTTTCAATTTCCTGATTG
AAGGGAAGAGAGTTCAGTTTGATACTTGGGTCCTTGACAACAACACACTT
CCAGGTGTTATCATGGCAATTGCATGGTTAGTCATGGAGGTTATCACCAT
CTTTTGTGTTTTCAATCTTGCGAAGCAGTTGATCGAcgtcaaaatggaaa
ataaagatgaaTTCGACGAAATCGAAGATTCGGTGTCGTTATTACCAAGA
GAGAAAGCTGAACAAGAAGTCCCCTTCGATGGCTCCTCTGATTCTCTCTT
TGACTCGCCAGGAGATACGGAGATGTCTCCTGAAAACCCTTTCGACGATA
TGGAAAGCGAACTAACAAAAGCAGCTCAAACTCTTCTTTGGTAACCCCTG
AACAAGATGCTATCGAAGAGATTGGTCAGGGAGTTTTCCATGAGAAACAA
AGAGAATTTGCAGATTATTGGCAATCTTTGAAAGAGATTTTGTGCGTTGA
ATTCCTTCTTATTACCACTGCTGATTTCATGTTATGGTTCTGTCAGACAA
ATTTCGAAATCCTTGCTCCTTATATTACTGAATTCGACTATGGATGGACA
CCACAGCTGACTGGAATGATTTACGTGGTTGGTGGTGTGCTTGTTATCAT
GGTATTTCTACTGATGTACTTTCTGAGTGCAAAATGTTCGGTCAAAGACG
CACATTTATTGGTAGTGTCTCTTGGAATGACTCAGATTTCCTTACTGTTT
TTGATATATGAGTCAACTTTACACGAACTGATGGCACGTCAGCTTGTTTT
CACCGCTATAGCTGTTTGTGTTTTCATCTCTATCCCATTAAACCTTGTCT
GCTCTCGAAGCTTACTCAGTAAATTGTTTCACCCAGATAAGATGGGGATA
GTGCAAGGACTGTCATCTGCCATCGCAAGGATCACCATGATTCTCGGACC
TATCCTCGGTGGCTATATTTTCAAAGGGAGAATCATTTATGGGACCATCA
CGTCTGTTTTCGTTTTCATCACTACCATCGGTTTCATCCCTGGCATCAAA
CGCATTCATCAACGTGAAGAACGACTTCGAGATGAACTTCGTGTGAAAAG
ACATAAATAACTCTTCAACTTATAACACCTTTTTTGAGCTGTATTTCTTT
GTCTGTCACGAAATCTTATTCTTGAAGATTCCAAAACCAAAACTAATCTT
TTCTTTTCCCTG Run BLAST on NCBI protein sequence of TCONS_00062910-protein >TCONS_00062910-protein ID=TCONS_00062910-protein|Name=TCONS_00062910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
SNVKVRMKKVFFDSTKQRAFILWPQKMSVKKYVIRKTREILYTDVFQLKR
RLLIMSFVLRYFMMGVEYSIILPTALLYMKTFNAGPFMTGLTIAAYPVAA
CISLPICGYFYDSTKRVKELLLILNGFEILGNLIYALPFSMLLPLLGRFI
AGIGDGFLALTVGELTYLYEEKHRLGVITLLEFGRVLGLIVGPSFNFLIE
GKRVQFDTWVLDNNTLPGVIMAIAWLVMEVITIFCVFNLAKQLIDVKMEN
KDEFDEIEDSVSLLPREKAEQEVPFDGSSDSLFDSPGDTEMSPENPFDDM
ESELTKAAQTLLW Run BLAST on NCBI transcript from alignment at scaffold_373:33615..35376 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062910 ID=TCONS_00062910|Name=TCONS_00062910|organism=Clytia hemisphaerica|type=transcript|length=1762bp|location=Sequence derived from alignment at scaffold_373:33615..35376 (Clytia hemisphaerica)
CAGGGAAAAGAAAAGATTAGTTTTGGTTTTGGAATCTTCAAGAATAAGAT
TTCGTGACAGACAAAGAAATACAGCTCAAAAAAGGTGTTATAAGTTGAAG
AGTTATTTATGTCTTTTCACACGAAGTTCATCTCGAAGTCGTTCTTCACG
TTGATGAATGCGTTTGATGCCAGGGATGAAACCGATGGTAGTGATGAAAA
CGAAAACAGACGTGATGGTCCCATAAATGATTCTCCCTTTGAAAATATAG
CCACCGAGGATAGGTCCGAGAATCATGGTGATCCTTGCGATGGCAGATGA
CAGTCCTTGCACTATCCCCATCTTATCTGGGTGAAACAATTTACTGAGTA
AGCTTCGAGAGCAGACAAGGTTTAATGGGATAGAGATGAAAACACAAACA
GCTATAGCGGTGAAAACAAGCTGACGTGCCATCAGTTCGTGTAAAGTTGA
CTCATATATCAAAAACAGTAAGGAAATCTGAGTCATTCCAAGAGACACTA
CCAATAAATGTGCGTCTTTGACCGAACATTTTGCACTCAGAAAGTACATC
AGTAGAAATACCATGATAACAAGCACACCACCAACCACGTAAATCATTCC
AGTCAGCTGTGGTGTCCATCCATAGTCGAATTCAGTAATATAAGGAGCAA
GGATTTCGAAATTTGTCTGACAGAACCATAACATGAAATCAGCAGTGGTA
ATAAGAAGGAATTCAACGCACAAAATCTCTTTCAAAGATTGCCAATAATC
TGCAAATTCTCTTTGTTTCTCATGGAAAACTCCCTGACCAATCTCTTCGA
TAGCATCTTGTTCAGGGGTTACCAAAGAAGAGTTTGAGCTGCTTTTGTTA
GTTCGCTTTCCATATCGTCGAAAGGGTTTTCAGGAGACATCTCCGTATCT
CCTGGCGAGTCAAAGAGAGAATCAGAGGAGCCATCGAAGGGGACTTCTTG
TTCAGCTTTCTCTCTTGGTAATAACGACACCGAATCTTCGATTTCGTCGA
AttcatctttattttccattttgacgTCGATCAACTGCTTCGCAAGATTG
AAAACACAAAAGATGGTGATAACCTCCATGACTAACCATGCAATTGCCAT
GATAACACCTGGAAGTGTGTTGTTGTCAAGGACCCAAGTATCAAACTGAA
CTCTCTTCCCTTCAATCAGGAAATTGAAACTTGGTCCAACGATCAATCCC
AAAACACGACCGAACTCAAGTAAAGTGATCACTCCAAGTCTATGTTTTTC
TTCATAAAGATAAGTTAACTCTCCGACAGTCAATGCCAGGAATCCATCAC
CGATACCAGCGATAAATCGTCCAAGTAACGGCAACAACATTGAAAATGGA
AGCGCGTAGATTAAATTACCAAGAATTTCAAATCCATTCAAAATAAGGAG
CAGCTCTTTTACTCGTTTGGTGCTATCGTAAAAATATCCACAGATAGGAA
GGCTGATGCAAGCAGCGACGGGGTAGGCAGCAATCGTCAATCCAGTCATG
AAAGGGCCAGCATTAAAAGTTTTCATGTATAAGAGAGCAGTCGGTAAAAT
GATGGAATATTCCACTCCCATCATAAAATAACGTAACACGAAGGACATGA
TAAGTAATCTTCTTTTCAATTGGAAAACATCCGTATAAAGTATTTCTCGC
GTTTTCCGGATGACATACTTCTTGACAGACATCTTTTGCGGCCAAAGAAT
AAACGCTCGCTGTTTTGTAGAATCAAAGAACACCTTCTTCATTCTCACCT
TTACGTTTGAAG Coding sequence (CDS) from alignment at scaffold_373:33615..35376 >TCONS_00062910 ID=TCONS_00062910|Name=TCONS_00062910|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_373:33615..35376 (Clytia hemisphaerica)
TTACCAAAGAAGAGTTTGAGCTGCTTTTGTTAGTTCGCTTTCCATATCGT
CGAAAGGGTTTTCAGGAGACATCTCCGTATCTCCTGGCGAGTCAAAGAGA
GAATCAGAGGAGCCATCGAAGGGGACTTCTTGTTCAGCTTTCTCTCTTGG
TAATAACGACACCGAATCTTCGATTTCGTCGAAttcatctttattttcca
ttttgacgTCGATCAACTGCTTCGCAAGATTGAAAACACAAAAGATGGTG
ATAACCTCCATGACTAACCATGCAATTGCCATGATAACACCTGGAAGTGT
GTTGTTGTCAAGGACCCAAGTATCAAACTGAACTCTCTTCCCTTCAATCA
GGAAATTGAAACTTGGTCCAACGATCAATCCCAAAACACGACCGAACTCA
AGTAAAGTGATCACTCCAAGTCTATGTTTTTCTTCATAAAGATAAGTTAA
CTCTCCGACAGTCAATGCCAGGAATCCATCACCGATACCAGCGATAAATC
GTCCAAGTAACGGCAACAACATTGAAAATGGAAGCGCGTAGATTAAATTA
CCAAGAATTTCAAATCCATTCAAAATAAGGAGCAGCTCTTTTACTCGTTT
GGTGCTATCGTAAAAATATCCACAGATAGGAAGGCTGATGCAAGCAGCGA
CGGGGTAGGCAGCAATCGTCAATCCAGTCATGAAAGGGCCAGCATTAAAA
GTTTTCATGTATAAGAGAGCAGTCGGTAAAATGATGGAATATTCCACTCC
CATCATAAAATAACGTAACACGAAGGACATGATAAGTAATCTTCTTTTCA
ATTGGAAAACATCCGTATAAAGTATTTCTCGCGTTTTCCGGATGACATAC
TTCTTGACAGACATCTTTTGCGGCCAAAGAATAAACGCTCGCTGTTTTGT
AGAATCAAAGAACACCTTCTTCATTCTCACCTTTACGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062910-exon-scaffold_373-1491911889:33615..35376 | TCONS_00062910-exon-scaffold_373-1491911889:33615..35376 | Clytia hemisphaerica | exon |
| TCONS_00062910-exon-scaffold_373-1510915933:33615..35376 | TCONS_00062910-exon-scaffold_373-1510915933:33615..35376 | Clytia hemisphaerica | exon |
| TCONS_00062910-exon-scaffold_373-1575043694:33615..35376 | TCONS_00062910-exon-scaffold_373-1575043694:33615..35376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_373 | supercontig | scaffold_373:33615..35376 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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