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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062916 ID=TCONS_00062916|Name=TCONS_00062916|organism=Clytia hemisphaerica|type=transcript|length=1401bp
gcttGACCGAAGCCGAAGTAAACAAGagacttaaaaaaagaaaagcacCA
ACACTTCGCCAACCAATTTTAAAGCAGTGTAAAACCAAAACTGAGATTAA
TCATTTTGAAAGAGACTCTGATGACAATGAAGGACCTGTATCTCCACTGC
CGCTGGCTGATCCTGTTGAACCCTTTCAAAAAGATGCATCGACCCAGTAT
GATCCACCACCGATAACTTTTGAATCCGTTTCCACTCAGACTGTTGACCA
GCGTACCTTAATGGTTGACCAGTCATGTCAATCTGAATCAGATAAGTTGG
CTATTGCTGCACGTATCGATAACATtatcttgaaaaattaaataaatatt
ttgagatcAACATCTTCTGATGATGAAAATTCAAACCCAATGGATGTAGA
ATCAATATTAAAATCAGAGAAGACAGCCAAATACTTCTCACTCCAAGACA
CTTTTGGGATCTGTGCGAATTCCTCGGTGATGCCAAGCATCATTTGACAT
ATTGGAATAGCAAGAAAGATTCAACTAATGAAAATGCAAGAAGTACCAGG
GCCTGTTGTCTTACCCTCCCCCAGCAGCTTTTCATTACTTTATTGAGATT
ACGCCGTGGTTTTAACATAATGACGATCGCCCATTTTTACAGTGTCAGTG
AAAGTACAATACGAACCATATTCACTACTTGGAtcatgtttatttttcat
cattttaaatCCATCGCCCATCAATTTTGTCCAGAGAGACAGGCCTTcag
aaaatttctttcaaaggtGTTTCACCCTTTCAAAAACATACGTGCCAGTG
TTGATTGCACAGAGTTCAAGTGTCAGACCCCAAGGGACTACAAACAACAG
GGTCATATGTATTCCAGCTACAAAAGTCACTGTACCATGAAATGCATGAT
TGCTGTCAATCCAAATGGAGCTGCATGCTTTGTTTCAGATCTTTTCGAGG
GTAGTACCACTGATGTTGATTTGTTTGAACGTTCTGGCATATTGCAACAT
GTTAATTACAAAGATTCGTTCCTTGTCGATAAAGGTTTCACTGTCCAGCA
TTTGTTACTACCAAAGCAAGCTACTATTTTTATACCTCCTTTTCTAGGTA
AGCGTGAAAAGTTCACAAAGGAGGAAATCATTCTTACAAAAAGAATAGCA
AAAGCAAGAATTCACGTTGAACGTTTTAACGAGCCCTTGAAAAAATTCAG
ACTTATTGACAGGATAATTCCCTTGTCATTAGCTCATATGGCTTCGCAGT
TGGTATTTGTTGGGTGCATGCTTGTTaactttcaagaatttttatgcaaa
taaatgtttttttgtagaaaaataagATGATTTAGTATTTGACTTACATG
ACTTACATCTTTTTCTAGACTTTTTAGAACCTACCAAATCAAAGTGCCAC
A Run BLAST on NCBI protein sequence of TCONS_00062916-protein >TCONS_00062916-protein ID=TCONS_00062916-protein|Name=TCONS_00062916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MTIAHFYSVSESTIRTIFTTWIMFIFHHFKSIAHQFCPERQAFRKFLSKV
FHPFKNIRASVDCTEFKCQTPRDYKQQGHMYSSYKSHCTMKCMIAVNPNG
AACFVSDLFEGSTTDVDLFERSGILQHVNYKDSFLVDKGFTVQHLLLPKQ
ATIFIPPFLGKREKFTKEEIILTKRIAKARIHVERFNEPLKKFRLIDRII
PLSLAHMASQLVFVGCMLVNFQEFLCK Run BLAST on NCBI transcript from alignment at scaffold_373:130097..131497 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062916 ID=TCONS_00062916|Name=TCONS_00062916|organism=Clytia hemisphaerica|type=transcript|length=1401bp|location=Sequence derived from alignment at scaffold_373:130097..131497 (Clytia hemisphaerica)
TGTGGCACTTTGATTTGGTAGGTTCTAAAAAGTCTAGAAAAAGATGTAAG
TCATGTAAGTCAAATACTAAATCATcttatttttctacaaaaaaacattt
atttgcataaaaattcttgaaagttAACAAGCATGCACCCAACAAATACC
AACTGCGAAGCCATATGAGCTAATGACAAGGGAATTATCCTGTCAATAAG
TCTGAATTTTTTCAAGGGCTCGTTAAAACGTTCAACGTGAATTCTTGCTT
TTGCTATTCTTTTTGTAAGAATGATTTCCTCCTTTGTGAACTTTTCACGC
TTACCTAGAAAAGGAGGTATAAAAATAGTAGCTTGCTTTGGTAGTAACAA
ATGCTGGACAGTGAAACCTTTATCGACAAGGAACGAATCTTTGTAATTAA
CATGTTGCAATATGCCAGAACGTTCAAACAAATCAACATCAGTGGTACTA
CCCTCGAAAAGATCTGAAACAAAGCATGCAGCTCCATTTGGATTGACAGC
AATCATGCATTTCATGGTACAGTGACTTTTGTAGCTGGAATACATATGAC
CCTGTTGTTTGTAGTCCCTTGGGGTCTGACACTTGAACTCTGTGCAATCA
ACACTGGCACGTATGTTTTTGAAAGGGTGAAACacctttgaaagaaattt
tctgAAGGCCTGTCTCTCTGGACAAAATTGATGGGCGATGGatttaaaat
gatgaaaaataaacatgaTCCAAGTAGTGAATATGGTTCGTATTGTACTT
TCACTGACACTGTAAAAATGGGCGATCGTCATTATGTTAAAACCACGGCG
TAATCTCAATAAAGTAATGAAAAGCTGCTGGGGGAGGGTAAGACAACAGG
CCCTGGTACTTCTTGCATTTTCATTAGTTGAATCTTTCTTGCTATTCCAA
TATGTCAAATGATGCTTGGCATCACCGAGGAATTCGCACAGATCCCAAAA
GTGTCTTGGAGTGAGAAGTATTTGGCTGTCTTCTCTGATTTTAATATTGA
TTCTACATCCATTGGGTTTGAATTTTCATCATCAGAAGATGTTgatctca
aaatatttatttaatttttcaagataATGTTATCGATACGTGCAGCAATA
GCCAACTTATCTGATTCAGATTGACATGACTGGTCAACCATTAAGGTACG
CTGGTCAACAGTCTGAGTGGAAACGGATTCAAAAGTTATCGGTGGTGGAT
CATACTGGGTCGATGCATCTTTTTGAAAGGGTTCAACAGGATCAGCCAGC
GGCAGTGGAGATACAGGTCCTTCATTGTCATCAGAGTCTCTTTCAAAATG
ATTAATCTCAGTTTTGGTTTTACACTGCTTTAAAATTGGTTGGCGAAGTG
TTGgtgcttttctttttttaagtctCTTGTTTACTTCGGCTTCGGTCaag
c Coding sequence (CDS) from alignment at scaffold_373:130097..131497 >TCONS_00062916 ID=TCONS_00062916|Name=TCONS_00062916|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_373:130097..131497 (Clytia hemisphaerica)
ttatttgcataaaaattcttgaaagttAACAAGCATGCACCCAACAAATA
CCAACTGCGAAGCCATATGAGCTAATGACAAGGGAATTATCCTGTCAATA
AGTCTGAATTTTTTCAAGGGCTCGTTAAAACGTTCAACGTGAATTCTTGC
TTTTGCTATTCTTTTTGTAAGAATGATTTCCTCCTTTGTGAACTTTTCAC
GCTTACCTAGAAAAGGAGGTATAAAAATAGTAGCTTGCTTTGGTAGTAAC
AAATGCTGGACAGTGAAACCTTTATCGACAAGGAACGAATCTTTGTAATT
AACATGTTGCAATATGCCAGAACGTTCAAACAAATCAACATCAGTGGTAC
TACCCTCGAAAAGATCTGAAACAAAGCATGCAGCTCCATTTGGATTGACA
GCAATCATGCATTTCATGGTACAGTGACTTTTGTAGCTGGAATACATATG
ACCCTGTTGTTTGTAGTCCCTTGGGGTCTGACACTTGAACTCTGTGCAAT
CAACACTGGCACGTATGTTTTTGAAAGGGTGAAACacctttgaaagaaat
tttctgAAGGCCTGTCTCTCTGGACAAAATTGATGGGCGATGGatttaaa
atgatgaaaaataaacatgaTCCAAGTAGTGAATATGGTTCGTATTGTAC
TTTCACTGACACTGTAAAAATGGGCGATCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062916-exon-scaffold_373-1491911889:130097..131497 | TCONS_00062916-exon-scaffold_373-1491911889:130097..131497 | Clytia hemisphaerica | exon |
| TCONS_00062916-exon-scaffold_373-1510915933:130097..131497 | TCONS_00062916-exon-scaffold_373-1510915933:130097..131497 | Clytia hemisphaerica | exon |
| TCONS_00062916-exon-scaffold_373-1575043694:130097..131497 | TCONS_00062916-exon-scaffold_373-1575043694:130097..131497 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_373 | supercontig | scaffold_373:130097..131497 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027806 | HARBI1_dom |
Blast
The following BLAST results are available for this feature:
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