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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062924 ID=TCONS_00062924|Name=TCONS_00062924|organism=Clytia hemisphaerica|type=transcript|length=3485bp
ataaaatcaaaacattgtgtgtcatgattttttttcaaatgaatttaCTT
TGGATTAAAAGAATGTCAACCTGTTTCTATGCTATCTAAATGGGAGCTTG
CACATAGCACAGCATTGACGCATTGACTAGATTTGAATATTGTAATATAA
CCTTTAACGACTATTGATATTCCTTGTAGTCTCTTGTGGAGCTCACAAAT
CATAAAACGATGAAAAACGAAGAGAATAAACCACTTCTTGGTGAATCCAT
ATCTTCCAAAGAAGAAACAGTCGAAGGTGAAGTTGAAAGTCCTTGTTTTT
TATGTGGAACCACAGTCAATAAAAATGATGACGAACTTGGTGAAGTAATG
CCTGGAGGAATGTCAATATTCAAAACAGCTGTTTTTATAGTTGCTGAAAT
TGCTGGTAGTGGAATTCTAGCTTTACCGAATGCCTTAGCTGGTACGAGTT
GGACTGGGATAGGGTTATTGGTTGTTTTAGGACTTTTAGCACTTTATTGT
GCAACTTTATTAGGTGATTGTTGGAACATCATTAAACGAAAACATGATGT
CCCAAGGAATATCAGAGACCCTTATCCCTTGATTGGGATCCATGCTGCTG
GAAAGTTTGGTAAATATGCTGTCGAACTATGCATCTTTTTTACATTGGTA
GGATCCTCGGTCGTATACATCCTTTTGTCagcaaaacaaatttcttcAAT
CTTAAACGTATCTATAGGAGAATTTGATGATCCTAAAACTGAATTTAGAT
TCTGGATTCTAATTTGTGGTGCTGTATTGATTCCATGTACTTGGTTTGCA
TCACCGAAGGAAATGTGGTTTATTGCCTATGGAGCAACAGTCTGCACTTT
TGCTGCTTGTGTATTAATCATTATACGCTCTACTATGCATTTGTACAACT
ATGGCATGGCAGATGAATCTAAATTTACAGACCCAAGTGTTACCAGCTTT
TTCACTGCATTTGGTACAATAGCATTTGCTTATGGAGGTGGATCTCTATT
GCCAACACTGCAAGCCGATATGAAGAAACCTACCAGTTTCATTTACGCAG
CATTTCTTGGTTTTATCTTCATCTTTGTATTATACCTACCATGCACCTTG
TTACCATACCTTTGCATTGGAAGTAAAATTGATCCTAATGTTTTAGAAAC
TTTGGAGACTCTACCAGGAGATGGCAAAACTATGATTACGATAGCCAAGA
CTTTGATTACTTTTCATCTTTTGTTTGCCATTGTCGTTATTACCAATCCA
ATTACTCAGTTGTTGGAAGAAAAGTTCGGAATTGAACACAAATTTGGCAT
CAAGCGTATTTTGGTTCGATCAATTAACGGAGTCCTAATGATTGGCTTAG
CAGAATTATTCCCAAACTTTGGGCCTATCTTGTCGCTCATTGGTGGATCT
ACATTGACTTGCTTGTGCTATATTTTCCCAGCCATGTTTTACTTACAAAt
cgaagaaaaacatttaataCCGTTACACAAGAAAGTTCTACTAATCGAAA
TAGTGTTTATAGCATTGGGCTGTGGAGCTGCAAGCACTTATTCGTCTATA
CTTGGTTTTGAGAATCCTTTTAAAACATAGATTCTATATATACTAACCTT
GACGAACAACTGTTggagttcgaaaaatggaccatTCAGACAAAATTTAA
ACCCTCCAGATAGAATTCGGACCATAACAGGCGGCATTTGGAGTgtgata
tattttttcgaaaactccCCCTGTTCAGACCTTTAGCAGACGCTATCAAA
TCTTTTGAATATCTGATTATTTGAGAATTCGaatcagtggcgtggtggga
aaatttttctggggtggccaagcagaatttggcgccctttttagaagctt
tttatttttgatgccCCCTCTTTTTATGTTACGTTTCCTTACGAAtacaa
tttaagaaaattttggttAATTGTGCATGTAACAGAAGAAGACAGATATA
ATATCCAAACTTAAAATGTCAGGTATGAAGTCTCATTGATCATTTTATAT
TAATTATCTCCTAATCAGATACATCATAGCgctatcaaaattattttcta
aaaacattatTGAGCTTTGAGGATGTAGTATCTCtataaaacaacaaatt
gatACTACATGGCCCGCTTGATGACTTCTACCAGCTCTTCCTACCTGCTT
ACAGTAGTCAACAAGACTGTATGCTGGTCCAAAATGAATAACATTTGTCA
CGTTCTTAGCATCTACACCACATCCCAATGCGCTAGTTGCAACTGTGATT
CGAACAGCACCATGGGGATCAATCAGCGAATCCAGAACTCTCTTCTTTTT
GTGCGGAAGGGTTTCACTATGGTACATCCCTATTAAGTTTTGCCAATTTG
GTACAtgtagttttaaaatattttccattctTTCGTACATCCAACCTGCT
AGCTCAATGGTGCGacaaaaaattattgttttggGACAGTTTGACTTTTG
ATCAATAAGGAGTTGAATCAACCATCGTAAGGATTCAATTGTTATTGAAT
TAAAGGGTCGAAAACTTCACCTGAGTAGATCTGAGTCAACTGATGACCTC
CAAAAGCATCATCTGttggaaaaaactaaaaaccttcccatttatttttt
gcaaatttttatatagaaaaatttaaaatttgtttttaaattcaacCCTA
TCTACAAGAGAAAATGCTTGTAGACTATCACATAAGTAAGTCTGCAAACC
TATaataaaaccaaacctaaaTTCATCGGTTAGTactctaaatatttttt
aatttttcatctttttctaattttcaaaacatactaAATCATAAACACAA
AAAAGAgagtgcgagcgaagcgagccagcgaaattttgttttttagatGA
CTAGGGGCGCCATTTTTGGCTTTTCAATTGCCCATCTTTCGTTAGGGGTg
cctgaaaaatcctttttggcgccccttttttttcggcgccccttctcaaa
agggctccgctgggggggaCCTGGCACCCCtgccccccctgccaccacgc
cactgatTCGAATAAGCTACAAACTAAATAGCTTGAACACTATTCACAAG
TTTAACCCAGGTAAAAATCACAGACTATTTATTTGCAAGGCTTGTTGGCC
ACCATCCTCCATCTGAGTTTACTCTTCCCTTGTGAAAGTAAAGTTATGAA
TTTATATCCCACAATGCTCCTCGCTGCTTTTTTATTAGGAAACTTCAAAT
TCGAACCCAGTTCCTTTGTTCGCTTTTTTGCATGACTCTGATCTTGCACG
AACGATTGTACCAATTTCCATCAGcagcaaaattaaaaatgtgGTCCTGG
GTACGAGATTTACTTCTAAattgcttttgtttttgttctttcCAATTTAA
ATTATTAGTTTTTGTACATATAAATCAGTCAAAATGTTAccgtattttaa
atttttagcattttttaaattttatctgTATTTGCCTTCGAAATCTATCA
AATCAAGCCAAGAAAGTCTACAATCACCAAACAAA Run BLAST on NCBI protein sequence of TCONS_00062924-protein >TCONS_00062924-protein ID=TCONS_00062924-protein|Name=TCONS_00062924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
MKNEENKPLLGESISSKEETVEGEVESPCFLCGTTVNKNDDELGEVMPGG
MSIFKTAVFIVAEIAGSGILALPNALAGTSWTGIGLLVVLGLLALYCATL
LGDCWNIIKRKHDVPRNIRDPYPLIGIHAAGKFGKYAVELCIFFTLVGSS
VVYILLSAKQISSILNVSIGEFDDPKTEFRFWILICGAVLIPCTWFASPK
EMWFIAYGATVCTFAACVLIIIRSTMHLYNYGMADESKFTDPSVTSFFTA
FGTIAFAYGGGSLLPTLQADMKKPTSFIYAAFLGFIFIFVLYLPCTLLPY
LCIGSKIDPNVLETLETLPGDGKTMITIAKTLITFHLLFAIVVITNPITQ
LLEEKFGIEHKFGIKRILVRSINGVLMIGLAELFPNFGPILSLIGGSTLT
CLCYIFPAMFYLQIEEKHLIPLHKKVLLIEIVFIALGCGAASTYSSILGF
ENPFKT Run BLAST on NCBI transcript from alignment at scaffold_374:33211..37088+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062924 ID=TCONS_00062924|Name=TCONS_00062924|organism=Clytia hemisphaerica|type=transcript|length=3878bp|location=Sequence derived from alignment at scaffold_374:33211..37088+ (Clytia hemisphaerica)
ataaaatcaaaacattgtgtgtcatgattttttttcaaatgaatttaCTT
TGGATTAAAAGAATGTCAACCTGTTTCTATGCTATCTAAATGGGAGCTTG
CACATAGCACAGCATTGACGCATTGACTAGATTTGAATATTGTAATATAA
CCTTTAACGACTATTGATATTCCTTGTAGTCTCTTGTGGAGCTCACAAAT
CATAAAACGATGAAAAACGAAGAGAATAAACCACTTCTTGGTGAATCCAT
ATCTTCCAAAGAAGAAACAGTCGAAGGTGAAGTTGAAAGTCCTTGTTTTT
TATGTGGAACCACAGTCAATAAAAATGATGACGAACTTGGTGAAGTAATG
CCTGGAGGAATGTCAATATTCAAAACAGCTGTTTTTATAGTTGCTGAAAT
TGCTGGTAGTGGAATTCTAGCTTTACCGAATGCCTTAGCTGGTACGAGTT
GGACTGGGATAGGGTTATTGGTTGTTTTAGGACTTTTAGCACTTTATTGT
GCAACTTTATTAGGTGATTGTTGGAACATCATTAAACGAAAACATGATGT
CCCAAGGAATATCAGAGACCCTTATCCCTTGATTGGGATCCATGCTGCTG
GAAAGTTTGGTAAATATGCTGTCGAACTATGCATCTTTTTTACATTGGTA
GGATCCTCGGTCGTATACATCCTTTTGTCagcaaaacaaatttcttcAAT
CTTAAACGTATCTATAGGAGAATTTGATGATCCTAAAACTGAATTTAGAT
TCTGGATTCTAATTTGTGGTGCTGTATTGATTCCATGTACTTGGTTTGCA
TCACCGAAGGAAATGTGGTTTATTGCCTATGGAGCAACAGTCTGCACTTT
TGCTGCTTGTGTATTAATCATTATACGCTCTACTATGCATTTGTACAACT
ATGGCATGGCAGATGAATCTAAATTTACAGACCCAAGTGTTACCAGCTTT
TTCACTGCATTTGGTACAATAGCATTTGCTTATGGAGGTGGATCTCTATT
GCCAACACTGCAAGCCGATATGAAGAAACCTACCAGTTTCATTTACGCAG
CATTTCTTGGTTTTATCTTCATCTTTGTATTATACCTACCATGCACCTTG
TTACCATACCTTTGCATTGGAAGTAAAATTGATCCTAATGTTTTAGAAAC
TTTGGAGACTCTACCAGGAGATGGCAAAACTATGATTACGATAGCCAAGA
CTTTGATTACTTTTCATCTTTTGTTTGCCATTGTCGTTATTACCAATCCA
ATTACTCAGTTGTTGGAAGAAAAGTTCGGAATTGAACACAGTATGTATTT
TTGTTCTTATACCAAGTATTTTAATTGTGCCAGACCCCCCCCCCAAACAT
AAACCACTGTAGTAGATACTTGACACCTGCCGATATTTTACACCATACGT
CCCTGTTTcgaataattattttcaaatttagcttaaagtgtttccgtttc
ataccAGACACATGTTTCGTATCAGTACAGTGTCTGCCGATTaatatatt
gtgctgatataaacaaaaattgttttcttttcctcctttctaaccaatct
tgctccacatccgtgtcaatccaatatcaaaaagcttgtaaattaaaatt
gatgagtaaacaaacaatatcactcttatttaaaaacaaaacctttaaga
ataACATACAATAATACTCCATCTTTTGTTTAGAATTTGGCATCAAGCGT
ATTTTGGTTCGATCAATTAACGGAGTCCTAATGATTGGCTTAGCAGAATT
ATTCCCAAACTTTGGGCCTATCTTGTCGCTCATTGGTGGATCTACATTGA
CTTGCTTGTGCTATATTTTCCCAGCCATGTTTTACTTACAAAtcgaagaa
aaacatttaataCCGTTACACAAGAAAGTTCTACTAATCGAAATAGTGTT
TATAGCATTGGGCTGTGGAGCTGCAAGCACTTATTCGTCTATACTTGGTT
TTGAGAATCCTTTTAAAACATAGATTCTATATATACTAACCTTGACGAAC
AACTGTTggagttcgaaaaatggaccatTCAGACAAAATTTAAACCCTCC
AGATAGAATTCGGACCATAACAGGCGGCATTTGGAGTgtgatatattttt
tcgaaaactccCCCTGTTCAGACCTTTAGCAGACGCTATCAAATCTTTTG
AATATCTGATTATTTGAGAATTCGaatcagtggcgtggtgggaaaatttt
tctggggtggccaagcagaatttggcgccctttttagaagctttttattt
ttgatgccCCCTCTTTTTATGTTACGTTTCCTTACGAAtacaatttaaga
aaattttggttAATTGTGCATGTAACAGAAGAAGACAGATATAATATCCA
AACTTAAAATGTCAGGTATGAAGTCTCATTGATCATTTTATATTAATTAT
CTCCTAATCAGATACATCATAGCgctatcaaaattattttctaaaaacat
tatTGAGCTTTGAGGATGTAGTATCTCtataaaacaacaaattgatACTA
CATGGCCCGCTTGATGACTTCTACCAGCTCTTCCTACCTGCTTACAGTAG
TCAACAAGACTGTATGCTGGTCCAAAATGAATAACATTTGTCACGTTCTT
AGCATCTACACCACATCCCAATGCGCTAGTTGCAACTGTGATTCGAACAG
CACCATGGGGATCAATCAGCGAATCCAGAACTCTCTTCTTTTTGTGCGGA
AGGGTTTCACTATGGTACATCCCTATTAAGTTTTGCCAATTTGGTACAtg
tagttttaaaatattttccattctTTCGTACATCCAACCTGCTAGCTCAA
TGGTGCGacaaaaaattattgttttggGACAGTTTGACTTTTGATCAATA
AGGAGTTGAATCAACCATCGTAAGGATTCAATTGTTATTGAATTAAAGGG
TCGAAAACTTCACCTGAGTAGATCTGAGTCAACTGATGACCTCCAAAAGC
ATCATCTGttggaaaaaactaaaaaccttcccatttattttttgcaaatt
tttatatagaaaaatttaaaatttgtttttaaattcaacCCTATCTACAA
GAGAAAATGCTTGTAGACTATCACATAAGTAAGTCTGCAAACCTATaata
aaaccaaacctaaaTTCATCGGTTAGTactctaaatattttttaattttt
catctttttctaattttcaaaacatactaAATCATAAACACAAAAAAGAg
agtgcgagcgaagcgagccagcgaaattttgttttttagatGACTAGGGG
CGCCATTTTTGGCTTTTCAATTGCCCATCTTTCGTTAGGGGTgcctgaaa
aatcctttttggcgccccttttttttcggcgccccttctcaaaagggctc
cgctgggggggaCCTGGCACCCCtgccccccctgccaccacgccactgat
TCGAATAAGCTACAAACTAAATAGCTTGAACACTATTCACAAGTTTAACC
CAGGTAAAAATCACAGACTATTTATTTGCAAGGCTTGTTGGCCACCATCC
TCCATCTGAGTTTACTCTTCCCTTGTGAAAGTAAAGTTATGAATTTATAT
CCCACAATGCTCCTCGCTGCTTTTTTATTAGGAAACTTCAAATTCGAACC
CAGTTCCTTTGTTCGCTTTTTTGCATGACTCTGATCTTGCACGAACGATT
GTACCAATTTCCATCAGcagcaaaattaaaaatgtgGTCCTGGGTACGAG
ATTTACTTCTAAattgcttttgtttttgttctttcCAATTTAAATTATTA
GTTTTTGTACATATAAATCAGTCAAAATGTTAccgtattttaaattttta
gcattttttaaattttatctgTATTTGCCTTCGAAATCTATCAAATCAAG
CCAAGAAAGTCTACAATCACCAAACAAA Coding sequence (CDS) from alignment at scaffold_374:33211..37088+ >TCONS_00062924 ID=TCONS_00062924|Name=TCONS_00062924|organism=Clytia hemisphaerica|type=CDS|length=2742bp|location=Sequence derived from alignment at scaffold_374:33211..37088+ (Clytia hemisphaerica)
ATGAAAAACGAAGAGAATAAACCACTTCTTGGTGAATCCATATCTTCCAA
AGAAGAAACAGTCGAAGGTGAAGTTGAAAGTCCTTGTTTTTTATGTGGAA
CCACAGTCAATAAAAATGATGACGAACTTGGTGAAGTAATGCCTGGAGGA
ATGTCAATATTCAAAACAGCTGTTTTTATAGTTGCTGAAATTGCTGGTAG
TGGAATTCTAGCTTTACCGAATGCCTTAGCTGGTACGAGTTGGACTGGGA
TAGGGTTATTGGTTGTTTTAGGACTTTTAGCACTTTATTGTGCAACTTTA
TTAGGTGATTGTTGGAACATCATTAAACGAAAACATGATGTCCCAAGGAA
TATCAGAGACCCTTATCCCTTGATTGGGATCCATGCTGCTGGAAAGTTTG
GTAAATATGCTGTCGAACTATGCATCTTTTTTACATTGGTAGGATCCTCG
GTCGTATACATCCTTTTGTCagcaaaacaaatttcttcAATCTTAAACGT
ATCTATAGGAGAATTTGATGATCCTAAAACTGAATTTAGATTCTGGATTC
TAATTTGTGGTGCTGTATTGATTCCATGTACTTGGTTTGCATCACCGAAG
GAAATGTGGTTTATTGCCTATGGAGCAACAGTCTGCACTTTTGCTGCTTG
TGTATTAATCATTATACGCTCTACTATGCATTTGTACAACTATGGCATGG
CAGATGAATCTAAATTTACAGACCCAAGTGTTACCAGCTTTTTCACTGCA
TTTGGTACAATAGCATTTGCTTATGGAGGTGGATCTCTATTGCCAACACT
GCAAGCCGATATGAAGAAACCTACCAGTTTCATTTACGCAGCATTTCTTG
GTTTTATCTTCATCTTTGTATTATACCTACCATGCACCTTGTTACCATAC
CTTTGCATTGGAAGTAAAATTGATCCTAATGTTTTAGAAACTTTGGAGAC
TCTACCAGGAGATGGCAAAACTATGATTACGATAGCCAAGACTTTGATTA
CTTTTCATCTTTTGTTTGCCATTGTCGTTATTACCAATCCAATTACTCAG
TTGTTGGAAGAAAAGTTCGGAATTGAACACAAATTTGGCATCAAGCGTAT
TTTGGTTCGATCAATTAACGGAGTCCTAATGATTGGCTTAGCAGAATTAT
TCCCAAACTTTGGGCCTATCTTGTCGCTCATTGGTGGATCTACATTGACT
TGCTTGTGCTATATTTTCCCAGCCATGTTTTACTTACAAAtcgaagaaaa
acatttaataCCGTTACACAAGAAAGTTCTACTAATCGAAATAGTGTTTA
TAGCATTGGGCTGTGGAGCTGCAAGCACTTATTCGTCTATACTTGGTTTT
GAGAATCCTTTTAAAACATAGATGAAAAACGAAGAGAATAAACCACTTCT
TGGTGAATCCATATCTTCCAAAGAAGAAACAGTCGAAGGTGAAGTTGAAA
GTCCTTGTTTTTTATGTGGAACCACAGTCAATAAAAATGATGACGAACTT
GGTGAAGTAATGCCTGGAGGAATGTCAATATTCAAAACAGCTGTTTTTAT
AGTTGCTGAAATTGCTGGTAGTGGAATTCTAGCTTTACCGAATGCCTTAG
CTGGTACGAGTTGGACTGGGATAGGGTTATTGGTTGTTTTAGGACTTTTA
GCACTTTATTGTGCAACTTTATTAGGTGATTGTTGGAACATCATTAAACG
AAAACATGATGTCCCAAGGAATATCAGAGACCCTTATCCCTTGATTGGGA
TCCATGCTGCTGGAAAGTTTGGTAAATATGCTGTCGAACTATGCATCTTT
TTTACATTGGTAGGATCCTCGGTCGTATACATCCTTTTGTCagcaaaaca
aatttcttcAATCTTAAACGTATCTATAGGAGAATTTGATGATCCTAAAA
CTGAATTTAGATTCTGGATTCTAATTTGTGGTGCTGTATTGATTCCATGT
ACTTGGTTTGCATCACCGAAGGAAATGTGGTTTATTGCCTATGGAGCAAC
AGTCTGCACTTTTGCTGCTTGTGTATTAATCATTATACGCTCTACTATGC
ATTTGTACAACTATGGCATGGCAGATGAATCTAAATTTACAGACCCAAGT
GTTACCAGCTTTTTCACTGCATTTGGTACAATAGCATTTGCTTATGGAGG
TGGATCTCTATTGCCAACACTGCAAGCCGATATGAAGAAACCTACCAGTT
TCATTTACGCAGCATTTCTTGGTTTTATCTTCATCTTTGTATTATACCTA
CCATGCACCTTGTTACCATACCTTTGCATTGGAAGTAAAATTGATCCTAA
TGTTTTAGAAACTTTGGAGACTCTACCAGGAGATGGCAAAACTATGATTA
CGATAGCCAAGACTTTGATTACTTTTCATCTTTTGTTTGCCATTGTCGTT
ATTACCAATCCAATTACTCAGTTGTTGGAAGAAAAGTTCGGAATTGAACA
CAAATTTGGCATCAAGCGTATTTTGGTTCGATCAATTAACGGAGTCCTAA
TGATTGGCTTAGCAGAATTATTCCCAAACTTTGGGCCTATCTTGTCGCTC
ATTGGTGGATCTACATTGACTTGCTTGTGCTATATTTTCCCAGCCATGTT
TTACTTACAAAtcgaagaaaaacatttaataCCGTTACACAAGAAAGTTC
TACTAATCGAAATAGTGTTTATAGCATTGGGCTGTGGAGCTGCAAGCACT
TATTCGTCTATACTTGGTTTTGAGAATCCTTTTAAAACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062924-exon-scaffold_374-1491911889:33211..34500 | TCONS_00062924-exon-scaffold_374-1491911889:33211..34500 | Clytia hemisphaerica | exon |
| TCONS_00062924-exon-scaffold_374-1510915933:33211..34500 | TCONS_00062924-exon-scaffold_374-1510915933:33211..34500 | Clytia hemisphaerica | exon |
| TCONS_00062924-exon-scaffold_374-1575043694:33211..34500 | TCONS_00062924-exon-scaffold_374-1575043694:33211..34500 | Clytia hemisphaerica | exon |
| TCONS_00062924-exon-scaffold_374-1491911889:34894..37088 | TCONS_00062924-exon-scaffold_374-1491911889:34894..37088 | Clytia hemisphaerica | exon |
| TCONS_00062924-exon-scaffold_374-1510915933:34894..37088 | TCONS_00062924-exon-scaffold_374-1510915933:34894..37088 | Clytia hemisphaerica | exon |
| TCONS_00062924-exon-scaffold_374-1575043694:34894..37088 | TCONS_00062924-exon-scaffold_374-1575043694:34894..37088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_374 | supercontig | scaffold_374:33211..37088 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013057 | AA_transpt_TM |
Blast
The following BLAST results are available for this feature:
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