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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062928 ID=TCONS_00062928|Name=TCONS_00062928|organism=Clytia hemisphaerica|type=transcript|length=904bp
CTAGTTAAACAACACAGCTATCTTTCACCGCCACCCTTTAATCTCAATGA
TCAAGAAAGAAAATGGTCGAAGCaagaaatatcatttttatGATTACATG
TTGTTTAGTTTTTGGATTATTCACAGCATCCTGTATAGGAGCTGAATGGG
GTCGAATAAATGCTAAAGATCTCCACCAAAGTTTTCAGGGTCATATTGGC
TTGTGGAAAGGATGTGGACTCGTGAACTATATGATGAACGAAACATGTGT
CGATCTTACACAAAAAACAGTTCATCCAGATATCATACTGGTCAGAGGTT
TCAGCATTTTAGCTATCATTTTTAGTGCTGCCACAGTCATTTTGGCATGT
ATTATGACAGAGAAAGGACATTCTATAAAAGATGCTGGCAAGGGAATGGC
TTTTGTAGCTGGCTTAGGAGTTGTGGCAGGAATAGTTTTTATGATAAATA
TTGGACGTTTCAAAGATGACATGAGAGTGCTgaaagaaattgaaacattg
aactATAATTTTCAGTATGGAAGGTCCTACTATTTGAATTGGGTTGGAGT
TGCCGGAGCGACTGCAGCTGCTTTAATAGCTCTCTTTGCAAAGGATGTTG
ATCAAAACCAAGCGACTCCCGAAGCTGTATGGTTGTTTGAAAAATCACTA
GAACCCATGGAGAAATTTATAAATGAAGATAAATTTGAATTGTCAATAGC
TTAAAAATGATTTAGATTCTTAACTTTTAAATCAATTCTTGAAGACTTTG
TTTATATCTTTATATGATAACGATCAATTTTTTTGGATAAtgcttttgct
ttaaaaaaaattctgacatAACATTATTCATATGACCTGTTTTCTTATAT
CGTGACTTTAACAAAGTCGTGACCCTATCATGTTGCGTTAACCGTAAAAA
CAAT Run BLAST on NCBI protein sequence of TCONS_00062928-protein >TCONS_00062928-protein ID=TCONS_00062928-protein|Name=TCONS_00062928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MVEARNIIFMITCCLVFGLFTASCIGAEWGRINAKDLHQSFQGHIGLWKG
CGLVNYMMNETCVDLTQKTVHPDIILVRGFSILAIIFSAATVILACIMTE
KGHSIKDAGKGMAFVAGLGVVAGIVFMINIGRFKDDMRVLKEIETLNYNF
QYGRSYYLNWVGVAGATAAALIALFAKDVDQNQATPEAVWLFEKSLEPME
KFINEDKFELSIA Run BLAST on NCBI transcript from alignment at scaffold_374:28976..30829- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062928 ID=TCONS_00062928|Name=TCONS_00062928|organism=Clytia hemisphaerica|type=transcript|length=1854bp|location=Sequence derived from alignment at scaffold_374:28976..30829- (Clytia hemisphaerica)
CTAGTTAAACAACACAGCTATCTTTCACCGCCACCCTTTAATCTCAATGA
TCAAGAAAGAAAATGGTCGAAGCAAGAAATATCATTTTTATGATTACATG
TTGTTTAGTTTTTGGATTATTCACAGCATCCTGTATAGGAGCTGAATGGG
GTCGAATAAATGCTAAAGATCTCCACCAAAGTTTTCAGGGTAAGTAAGGC
AACTTTGTGTCACAGACCCGCTGGAGCCCCAGCCCACTGGAAAATTTGGT
AAATATTTCATCCCCGGTGGGAAAAATACCCTAGAATTTCAGCCCCATGG
GAAATTGACTTTGATTTCATCCCCACTCGAAATTCAATGTTTAAAAAATG
CACTCCAAAACCATTCCCACTGGATTTTTTGACCTTGGAACAATAGAATT
ATTATCCTCAACAAGATTTCAATATGAATATTTATCCCACTGTGAGAAAA
AAATTTCACCGGGGCTGTGAGACTGGGGTGTAGAAAGGCTTAAAGCTTTT
GTTTTTACGATTCGTATTCATTCTTTAATTTCTTTTTTATTTTTTGCGTT
CAGTGCAGGGTCGGCGAAACGGGGGGGCCATGCCCCCCCCCCACTTTTTT
GCTAAGAAAAAAAACAACCAACCAACCATGGTGGCGCCTCCTTAGACACT
TACTATTTGGCCCCTCCACTTTCAAAATTGATTCACCGGCCCTGCAGTGA
AAAATCTTTTCTGCCCTCGGGGATATTTAATAACAACAGAAAACATTATC
TAGAGCTATAAATGTTTTCGTTTTCGATTTCATGTGTCGAACAATTTTAT
TAAAACATGAGCCTCATAAATTCTGACAAATTGCTTAAATAGCAAAGGCT
CAGATTTCAGCAATGGCTAATATAAATTGTGGAATTCAAGCCACTTTAAA
GTCAGCAAAGAAATCAAATAAGCGTATTATTTGAAACATTTTAGAAACTG
TACTTTCGACTAAAAATCACAAAAATTAAGAAGAATACCAAAACCAAAAC
TTACTGGCTCTTTCACAACCAACTCTCATCCTTTCTTTTTCTTTTCATTA
TTGACTTTACGGGGAATTAAAATCCGCATTCTCTTAGCCATTGGTGAGAT
CTGACGCTGGTATTGTTCTTAATTTTCAAACAATTTTAGGTCATATTGGC
TTGTGGAAAGGATGTGGACTCGTGAACTATATGATGAACGAAACATGTGT
CGATCTTACACAAAAAACAGTTCATCCAGATATCATACTGGTCAGAGGTT
TCAGCATTTTAGCTATCATTTTTAGTGCTGCCACAGTCATTTTGGCATGT
ATTATGACAGAGAAAGGACATTCTATAAAAGATGCTGGCAAGGGAATGGC
TTTTGTAGCTGGCTTAGGAGTTGTGGCAGGAATAGTTTTTATGATAAATA
TTGGACGTTTCAAAGATGACATGAGAGTGCTGAAAGAAATTGAAACATTG
AACTATAATTTTCAGTATGGAAGGTCCTACTATTTGAATTGGGTTGGAGT
TGCCGGAGCGACTGCAGCTGCTTTAATAGCTCTCTTTGCAAAGGATGTTG
ATCAAAACCAAGCGACTCCCGAAGCTGTATGGTTGTTTGAAAAATCACTA
GAACCCATGGAGAAATTTATAAATGAAGATAAATTTGAATTGTCAATAGC
TTAAAAATGATTTAGATTCTTAACTTTTAAATCAATTCTTGAAGACTTTG
TTTATATCTTTATATGATAACGATCAATTTTTTTGGATAATGCTTTTGCT
TTAAAAAAAATTCTGACATAACATTATTCATATGACCTGTTTTCTTATAT
CGTGACTTTAACAAAGTCGTGACCCTATCATGTTGCGTTAACCGTAAAAA
CAAT Coding sequence (CDS) from alignment at scaffold_374:28976..30829- >TCONS_00062928 ID=TCONS_00062928|Name=TCONS_00062928|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_374:28976..30829- (Clytia hemisphaerica)
GTCATATTGGCTTGTGGAAAGGATGTGGACTCGTGAACTATATGATGAAC
GAAACATGTGTCGATCTTACACAAAAAACAGTTCATCCAGATATCATACT
GGTCAGAGGTTTCAGCATTTTAGCTATCATTTTTAGTGCTGCCACAGTCA
TTTTGGCATGTATTATGACAGAGAAAGGACATTCTATAAAAGATGCTGGC
AAGGGAATGGCTTTTGTAGCTGGCTTAGGAGTTGTGGCAGGAATAGTTTT
TATGATAAATATTGGACGTTTCAAAGATGACATGAGAGTGCTGAAAGAAA
TTGAAACATTGAACTATAATTTTCAGTATGGAAGGTCCTACTATTTGAAT
TGGGTTGGAGTTGCCGGAGCGACTGCAGCTGCTTTAATAGCTCTCTTTGC
AAAGGATGTTGATCAAAACCAAGCGACTCCCGAAGCTGTATGGTTGTTTG
AAAAATCACTAGAACCCATGGAGAAATTTATAAATGAAGATAAATTTGAA
TTGTCAATAGCTTAAATGGTCGAAGCAAGAAATATCATTTTTATGATTAC
ATGTTGTTTAGTTTTTGGATTATTCACAGCATCCTGTATAGGAGCTGAAT
GGGGTCGAATAAATGCTAAAGATCTCCACCAAAGTTTTCAGGGTCATATT
GGCTTGTGGAAAGGATGTGGACTCGTGAACTATATGATGAACGAAACATG
TGTCGATCTTACACAAAAAACAGTTCATCCAGATATCATACTGGTCAGAG
GTTTCAGCATTTTAGCTATCATTTTTAGTGCTGCCACAGTCATTTTGGCA
TGTATTATGACAGAGAAAGGACATTCTATAAAAGATGCTGGCAAGGGAAT
GGCTTTTGTAGCTGGCTTAGGAGTTGTGGCAGGAATAGTTTTTATGATAA
ATATTGGACGTTTCAAAGATGACATGAGAGTGCTGAAAGAAATTGAAACA
TTGAACTATAATTTTCAGTATGGAAGGTCCTACTATTTGAATTGGGTTGG
AGTTGCCGGAGCGACTGCAGCTGCTTTAATAGCTCTCTTTGCAAAGGATG
TTGATCAAAACCAAGCGACTCCCGAAGCTGTATGGTTGTTTGAAAAATCA
CTAGAACCCATGGAGAAATTTATAAATGAAGATAAATTTGAATTGTCAAT
AGCTTAAATGGTCGAAGCAAGAAATATCATTTTTATGATTACATGTTGTT
TAGTTTTTGGATTATTCACAGCATCCTGTATAGGAGCTGAATGGGGTCGA
ATAAATGCTAAAGATCTCCACCAAAGTTTTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062928-exon-scaffold_374-1575043694:30641..30829 | TCONS_00062928-exon-scaffold_374-1575043694:30641..30829 | Clytia hemisphaerica | exon |
| TCONS_00062928-exon-scaffold_374-1575043694:28976..29690 | TCONS_00062928-exon-scaffold_374-1575043694:28976..29690 | Clytia hemisphaerica | exon |
| TCONS_00062928-exon-scaffold_374-1510915933:30641..30829 | TCONS_00062928-exon-scaffold_374-1510915933:30641..30829 | Clytia hemisphaerica | exon |
| TCONS_00062928-exon-scaffold_374-1510915933:28976..29690 | TCONS_00062928-exon-scaffold_374-1510915933:28976..29690 | Clytia hemisphaerica | exon |
| TCONS_00062928-exon-scaffold_374-1491911889:30641..30829 | TCONS_00062928-exon-scaffold_374-1491911889:30641..30829 | Clytia hemisphaerica | exon |
| TCONS_00062928-exon-scaffold_374-1491911889:28976..29690 | TCONS_00062928-exon-scaffold_374-1491911889:28976..29690 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_374 | supercontig | scaffold_374:28976..30829 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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