TCONS_00062941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062941
Unique NameTCONS_00062941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062941 ID=TCONS_00062941|Name=TCONS_00062941|organism=Clytia hemisphaerica|type=transcript|length=503bp
AAGTTATCTGCTACTTTATATACCATGAAATAGTGTAGACTAAAACCATT
TTTCTATCCGTCAATCCTAACAAACTCGAGTTTATTTCTTTTATGAGAAC
CAGTACCATTTTTTGACGAAGCTTAGTAGCTCTTATTTTTTGATACCTTA
AGGACGTCAAATTGTTTTCATACTGTTCTTTTTGTTAGCAAAAGTTCATA
TATTTTGGACCATTCTTGCTTGAAATTAAGCCATCCAAGGCTTGttctga
aattgttcttatattcttttttcgtttttgagCTTcatttttttttgatt
tttcataaaGCATGACGTCTTTTGAGCGTCAAGAAAACAGCTTATTTTCA
CAATTCTTTGACACTTTTGTACTGTAAGCATGTCTCTTGTGTCAAGACAA
AGTATTTAGGGAGTATTTACCCTAGTGTCCTCTTACTTAacgttttattt
attttgaaagtaaaattattGTCATAGCAACAAGAAAGTAAAATAACTTG
AAA
Run BLAST on NCBI

transcript from alignment at scaffold_374:82668..83170

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062941 ID=TCONS_00062941|Name=TCONS_00062941|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at scaffold_374:82668..83170 (Clytia hemisphaerica)
TTTCAAGTTATTTTACTTTCTTGTTGCTATGACaataattttactttcaa
aataaataaaacgtTAAGTAAGAGGACACTAGGGTAAATACTCCCTAAAT
ACTTTGTCTTGACACAAGAGACATGCTTACAGTACAAAAGTGTCAAAGAA
TTGTGAAAATAAGCTGTTTTCTTGACGCTCAAAAGACGTCATGCtttatg
aaaaatcaaaaaaaaatgAAGctcaaaaacgaaaaaagaatataagaaca
atttcagaaCAAGCCTTGGATGGCTTAATTTCAAGCAAGAATGGTCCAAA
ATATATGAACTTTTGCTAACAAAAAGAACAGTATGAAAACAATTTGACGT
CCTTAAGGTATCAAAAAATAAGAGCTACTAAGCTTCGTCAAAAAATGGTA
CTGGTTCTCATAAAAGAAATAAACTCGAGTTTGTTAGGATTGACGGATAG
AAAAATGGTTTTAGTCTACACTATTTCATGGTATATAAAGTAGCAGATAA
CTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039427XLOC_039427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062941-exon-scaffold_374-1491911889:82668..83170TCONS_00062941-exon-scaffold_374-1491911889:82668..83170Clytia hemisphaericaexon
TCONS_00062941-exon-scaffold_374-1510915933:82668..83170TCONS_00062941-exon-scaffold_374-1510915933:82668..83170Clytia hemisphaericaexon
TCONS_00062941-exon-scaffold_374-1575043694:82668..83170TCONS_00062941-exon-scaffold_374-1575043694:82668..83170Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_374supercontigscaffold_374:82668..83170 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.310287	0.145244	0.101688	0	0.366773	0.160735	0.963067	1.41689	0.616697	0.147069	0	0	0	0.4027	0.583366	1.02436	0.691804	0.50316	0.129561	0	0	0	0.535749	0.409382
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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