TCONS_00062942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062942
Unique NameTCONS_00062942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062942 ID=TCONS_00062942|Name=TCONS_00062942|organism=Clytia hemisphaerica|type=transcript|length=1723bp
ACAACCCACTGGGTGTCTCCCATGTTCGGCATCctctttaattttgattg
aaCCATTTTGGTAATGTGTATGAAAAACTCCCCTTACTTCTTTTCAGTAA
CAGTAACAATAGACAGGAGACAATGCCTGCAAAAGTGTTTTAAAGAGGGC
TGAAATTTCCCCTTTTACtgtaatcctaaaaactatcCGGCACTCGATGT
GTAGataattttttccaacacactaaagctctgaaggtccagaaattttt
aaactcTGGAAGGTTGGGATTACAGAATTTTGCCTGAATACACACATCAA
AGGGCCACAATCATCCCTCTACAATACTAAATGTCTCAAAGAAAAGTCTT
TCAATGATAGTGTCATTTTATCCAAAAACGATGTAAAAGAAAACgctaaa
aattaagaagaaatatttttaactttaaaaggGGTTCTCATTTTTCGCTT
TCTTATCCTTTAGTATCCAAAAGGCTTTGGACCCACAAGCCAAAACATAA
TCGCCGTTTGCGACGACAGGAACTGTCTAGTTATAACACTAAatcattct
ttttcatttaggaaaccatttcatattgccaaaaactattttaaaatAAT
GAGTGGCTTTTTATACAGTGTGTACATCATAAACAAAGCTGGCGGTCTTG
TCTACCAAAGAGACCATTCTATATCTGAAACAGAGATTTCTAGACAATTC
AACTATCCCACTGGTCTAGTTCTAAAAGAACTAGATGAAAAGCTGGTTGT
ATCTTATGGTGAGAAAAATGGAATCAAAGTTGGACATTCATTCGTTGCTA
TAAATGGAGAATATCTGAGCGGTAAATATATGCCGAATGGGGAATTGGTT
CAAGATtacttgaaaaatgaaaagaattttcctGCTAATTTAACATTTTG
TAAGCCgaaattgacaacaaatgaaCGTATTATGTTAGCATCAATGTTCC
ATTCTCTGTTTGCCATCTCCTGCAAATTATCACCTGTAGAAAAAAGTTCT
GGTATAGAGTTGCTGGAAACCAATTCTTTCAAATTGCATTGCTTTCAATC
AATTACTGGTGTGAAATTTCTGGTTTTAACAGATCCACGTGTTATGAATA
TGGAtgctttcttgaaaaaattatatGAATTTTATTCAGATTATGCGCTG
AAAAATCCATTTTATTCCCTAGAAATGCCAATTCGATGTGATTTATTTGA
TACCAACTTGCAGAAACATTTGGAACAGACAGAAAAATCAATTGCTCATG
GAGTAAACTcataaaatgatattttcatttACAAGTGCATAGATTGCTAT
AGTATatgatgtaatttttcaggAGTAAGGGTTGgaaggatttttatttt
tggtaaaagttatcttaatttatttcaatctcTTGACAAAATTTTACact
gaaaatgatattgatAATAGATAAAGTAGTAGACTCTCATTTGTAAAAGT
TTGGCATGGAATTTCTAAGAAGTCTGTTTTTCAATCTTATCAGCATATAC
AGTTGGCGCTCTCTAAGTCAACATTCTACTATTcaataggctcccttatt
cgacgaaatttaaagtccccgttaacaagaaactctcataaacggcgctc
ccttgaagatcgaattagaaagcttCAAACTGTAGCACAATGGAAATACA
ATTgtaaatattatatattttttcatcattaatattttgttattgatcct
taaaaattgaaaaatcaatcaCA
Run BLAST on NCBI

protein sequence of TCONS_00062942-protein

>TCONS_00062942-protein ID=TCONS_00062942-protein|Name=TCONS_00062942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MSGFLYSVYIINKAGGLVYQRDHSISETEISRQFNYPTGLVLKELDEKLV
VSYGEKNGIKVGHSFVAINGEYLSGKYMPNGELVQDYLKNEKNFPANLTF
CKPKLTTNERIMLASMFHSLFAISCKLSPVEKSSGIELLETNSFKLHCFQ
SITGVKFLVLTDPRVMNMDAFLKKLYEFYSDYALKNPFYSLEMPIRCDLF
DTNLQKHLEQTEKSIAHGVNS
Run BLAST on NCBI

transcript from alignment at scaffold_374:150008..151730

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062942 ID=TCONS_00062942|Name=TCONS_00062942|organism=Clytia hemisphaerica|type=transcript|length=1723bp|location=Sequence derived from alignment at scaffold_374:150008..151730 (Clytia hemisphaerica)
TGtgattgatttttcaatttttaaggatcaataacaaaatattaatgatg
aaaaaatatataatatttacAATTGTATTTCCATTGTGCTACAGTTTGaa
gctttctaattcgatcttcaagggagcgccgtttatgagagtttcttgtt
aacggggactttaaatttcgtcgaataagggagcctattgAATAGTAGAA
TGTTGACTTAGAGAGCGCCAACTGTATATGCTGATAAGATTGAAAAACAG
ACTTCTTAGAAATTCCATGCCAAACTTTTACAAATGAGAGTCTACTACTT
TATCTATTatcaatatcattttcagtGTAAAATTTTGTCAAgagattgaa
ataaattaagataacttttaccaaaaataaaaatccttcCAACCCTTACT
cctgaaaaattacatcatATACTATAGCAATCTATGCACTTGTaaatgaa
aatatcattttatgAGTTTACTCCATGAGCAATTGATTTTTCTGTCTGTT
CCAAATGTTTCTGCAAGTTGGTATCAAATAAATCACATCGAATTGGCATT
TCTAGGGAATAAAATGGATTTTTCAGCGCATAATCTGAATAAAATTCata
taattttttcaagaaagcaTCCATATTCATAACACGTGGATCTGTTAAAA
CCAGAAATTTCACACCAGTAATTGATTGAAAGCAATGCAATTTGAAAGAA
TTGGTTTCCAGCAACTCTATACCAGAACTTTTTTCTACAGGTGATAATTT
GCAGGAGATGGCAAACAGAGAATGGAACATTGATGCTAACATAATACGtt
catttgttgtcaatttcGGCTTACAAAATGTTAAATTAGCaggaaaattc
ttttcatttttcaagtaATCTTGAACCAATTCCCCATTCGGCATATATTT
ACCGCTCAGATATTCTCCATTTATAGCAACGAATGAATGTCCAACTTTGA
TTCCATTTTTCTCACCATAAGATACAACCAGCTTTTCATCTAGTTCTTTT
AGAACTAGACCAGTGGGATAGTTGAATTGTCTAGAAATCTCTGTTTCAGA
TATAGAATGGTCTCTTTGGTAGACAAGACCGCCAGCTTTGTTTATGATGT
ACACACTGTATAAAAAGCCACTCATTattttaaaatagtttttggcaata
tgaaatggtttcctaaatgaaaaagaatgatTTAGTGTTATAACTAGACA
GTTCCTGTCGTCGCAAACGGCGATTATGTTTTGGCTTGTGGGTCCAAAGC
CTTTTGGATACTAAAGGATAAGAAAGCGAAAAATGAGAACCccttttaaa
gttaaaaatatttcttcttaatttttagcGTTTTCTTTTACATCGTTTTT
GGATAAAATGACACTATCATTGAAAGACTTTTCTTTGAGACATTTAGTAT
TGTAGAGGGATGATTGTGGCCCTTTGATGTGTGTATTCAGGCAAAATTCT
GTAATCCCAACCTTCCAgagtttaaaaatttctggaccttcagagcttta
gtgtgttggaaaaaattatCTACACATCGAGTGCCGgatagtttttagga
ttacaGTAAAAGGGGAAATTTCAGCCCTCTTTAAAACACTTTTGCAGGCA
TTGTCTCCTGTCTATTGTTACTGTTACTGAAAAGAAGTAAGGGGAGTTTT
TCATACACATTACCAAAATGGttcaatcaaaattaaagagGATGCCGAAC
ATGGGAGACACCCAGTGGGTTGT

Coding sequence (CDS) from alignment at scaffold_374:150008..151730

>TCONS_00062942 ID=TCONS_00062942|Name=TCONS_00062942|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_374:150008..151730 (Clytia hemisphaerica)
ttatgAGTTTACTCCATGAGCAATTGATTTTTCTGTCTGTTCCAAATGTT
TCTGCAAGTTGGTATCAAATAAATCACATCGAATTGGCATTTCTAGGGAA
TAAAATGGATTTTTCAGCGCATAATCTGAATAAAATTCatataatttttt
caagaaagcaTCCATATTCATAACACGTGGATCTGTTAAAACCAGAAATT
TCACACCAGTAATTGATTGAAAGCAATGCAATTTGAAAGAATTGGTTTCC
AGCAACTCTATACCAGAACTTTTTTCTACAGGTGATAATTTGCAGGAGAT
GGCAAACAGAGAATGGAACATTGATGCTAACATAATACGttcatttgttg
tcaatttcGGCTTACAAAATGTTAAATTAGCaggaaaattcttttcattt
ttcaagtaATCTTGAACCAATTCCCCATTCGGCATATATTTACCGCTCAG
ATATTCTCCATTTATAGCAACGAATGAATGTCCAACTTTGATTCCATTTT
TCTCACCATAAGATACAACCAGCTTTTCATCTAGTTCTTTTAGAACTAGA
CCAGTGGGATAGTTGAATTGTCTAGAAATCTCTGTTTCAGATATAGAATG
GTCTCTTTGGTAGACAAGACCGCCAGCTTTGTTTATGATGTACACACTGT
ATAAAAAGCCACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039428XLOC_039428Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062942-proteinTCONS_00062942-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062942-exon-scaffold_374-1491911889:150008..151730TCONS_00062942-exon-scaffold_374-1491911889:150008..151730Clytia hemisphaericaexon
TCONS_00062942-exon-scaffold_374-1510915933:150008..151730TCONS_00062942-exon-scaffold_374-1510915933:150008..151730Clytia hemisphaericaexon
TCONS_00062942-exon-scaffold_374-1575043694:150008..151730TCONS_00062942-exon-scaffold_374-1575043694:150008..151730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_374supercontigscaffold_374:150008..151730 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.9851	34.9392	9.9761	7.13834	22.2786	14.1588	17.5942	16.9509	11.8282	10.9823	9.99491	9.27016	8.08842	9.75943	9.75337	9.36734	10.5019	9.80852	6.97478	6.82941	13.7525	14.3884	31.946	26.2345	8.25219	11.429	16.612	13.0994	20.417	20.8017
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007233TRAPPC
IPR011012Longin-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0030008 TRAPP complex
Blast
[Close]
BLAST of TCONS_00062942 vs. Swiss-Prot (Human)
Match: TPPC4 (Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.377e-80
Identity = 119/217 (54.84%), Postives = 170/217 (78.34%), Query Frame = 2 
Query:  611 LYSVYIINKAGGLVYQRDHSISETEISRQFNYPTGXXXXXXXXXXXXSYGEKNGIKVGHSFVAINGEYLSGKYMPNGELVQDYLKNEKNFPANLTFCKPKLTTNERIMLASMFHSLFAISCKLSPVEKSSGIELLETNSFKLHCFQSITGVKFLVLTDPRVMNMDAFLKKLYEFYSDYALKNPFYSLEMPIRCDLFDTNLQKHLEQTEKSIAHGVNS 1261
            ++SVY++NKAGGL+YQ D      E  + F+YP  L+LK  DE+++V++G+++GI+VGH+ +AING  ++G+Y  +G+ V +YL N  N+P ++ F +P+LT+NE++MLASMFHSLFAI  +LSP + SSGIE+LET++FKLHC+Q++TG+KF+VL DPR   +D+ L+K+YE YSD+ALKNPFYSLEMPIRC+LFD NL+  LE  EK+   G  S
Sbjct:    3 IFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGPGS 219
The following BLAST results are available for this feature:
BLAST of TCONS_00062942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPPC49.377e-8054.84Trafficking protein particle complex subunit 4 OS=... [more]
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