TCONS_00062945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062945
Unique NameTCONS_00062945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062945 ID=TCONS_00062945|Name=TCONS_00062945|organism=Clytia hemisphaerica|type=transcript|length=3054bp
AAAAGATAGAACAATACATAGATTTACCCAAAAAAGTAATTTTGGTATGG
TGGATAGTAGTGACTCTGAAAGCAATGAGGATCCAAGCTCTAATGAAGAA
TTTGAGGAAAGTGAAGAAAGTGAAGAGACTGAGGATGATTATAGTATTAT
GNTGAAGAATTTGAGGAAAGTGAGGAAAGTGAAGAGACTGAGGATGATTA
TAGCATTATGGACGATGATGATGATCTATCAGACGGTGAAAACAACAATG
ACTTGGCGAGCTATAgcgatgaagaagaaaatgaagacaaaTGTCCAGCA
aTGGATACATTGCAGTGTTTATTGTGCTCAGTCAAACATTATCCTGTCAA
GTTTGCCATCCATGGTATCATTGATAAAATACACCTTCCTTGTCTCAATA
TAAAAAACATTGGGCCAATTCATTTACCGTTGTGTGAGTCACAAGCTCAA
ATGATCATCAGTGGAGACTTGACTGACTCATCCAAAATGTTGAATTATAA
GGAATTTCCAAAAGACGAGTacacttttgaaaacccaaaattCGATCTCA
CAATCCAATCTATATTTgagaaagtgaaggagaaattCGGTTTCGAGATC
GATTTTTTCCTTCATGAACTTGTAATTAGTGGGAAAGGAAACCAgttttc
aagaaatttcaatGACGTTGAAGAAAACCAATTTGGCACTCTCATAGTAC
AGCTACCATCTTTATTCACTGGAAACAATGTAACCATTCACCATGGCAAG
GAAACTGAAACAATCAATTTTGATCGAAAAGAATCACAGAGTGAAATCAT
CTATACTGCTTTTCACTCAAACtgcaaatacaaaatgactccATTAAAAT
CTGGCTATCGATTGGTTCTTTTCTACAAATTAACAAGCATCGATTCTACA
GAACGTTTCAAACTTCTTGAAGAAAGCTCAAAAGTTAAACAAGAAATTGC
TGGCACTTTATCAGAGCTCAATAAAAGTCGCCGGAAGCATTTCGGGATAA
TGTTGGAAAATAAGTACCCAACGTCACCTTATAAATGTGATAATGACTAC
TCATTGAAAGGTCGAGATTTATGTGTCAAAAATATGTTGCAATCAGCCAA
TGAAATTCTACCAAAAGAAGAACAATATGTGTTTCATGTTACAAATTTTA
ACGAAACAATCTATGGTTTACCTGAAAATGCTGAAAGTCAAATAGCAGAA
ATGCTCAAATTTGTTCCTTGGGAAGAAATCAAGGATGTTGTAGAAAATGT
CATTGAAACTTTTGGGTTCAACCAGTATTACAACTGGATGACTGTGTTTT
TTCAATGTGAGATTTTTGATATTGCTCACAAAGTCATTGAGCTGACTTTA
AAAATTGATCCATCAGTATCAAGTACACAAGCTAACTATCGATCCTTgtg
gaattggattttcaacaGTGTCATTATATATAAAGAATTATCGACGTGTT
GGTTGGATGATATTACTGAGTGTGTAATTATTTCTTCTGACTTACAGCTA
CTCCATTTATTATGTGATAAGCTATTGTCTAATAAGCCAGCCAAATTAGC
AGCAGCTTTCAATCGCTTTATCAACTGCATTAAAGCTGAAAAATTGTCTT
CTTCTAATGCTTCAACGATTTCATCATTCGTTAAACTTACTCTGCACGAC
CCGGCAATCTTTAAAGAGCAACTGGAGACTTTGTTCGATCATCTATGGTT
ATATGACAAAGACCAAAGGATCATTCAAgatgtttttcttcatttaatga
aaatggaaGATAGGGATTATATCCAAACCGAAGGATTCAAAATGATCTTC
AATCGTTATTTCGATAGACTTCTCGAAAACGCTGCGAAAATTGATAGATT
AGGATGTTTTGCTGAACTTGTTTTCATGGCAAACACATCGAACATGGAGT
GTTACATTAAGAAGTACCTTGAAAAATGCCGAACAGTTTCAACGCCTGTC
TCACTATTTATGGTCATTAAAAGTATTTTTCGATTTACTGAGaaagaaaa
acatccaaaatacaTAGGAATGATTGATGATTTAGTGAAAATAATAATTC
CTCTGATTAAAGGAAATGAGAAGAAGAACGGCGAAGGAGAAAAATACATG
TTATGCAACTTAACGGTCTCCCTTTGTTGTCATGGTGATACATTCACATG
CCAAGTAGATGAGATATTTTCGAATCAATATTTCAAGAGCCTTTTCGAGC
GGTTCACCCTTCAACTGATCGAAGATTTGGAAGAGATTCAGCTGCCTAAA
ACAGAATCAAAAAATCTCAACAAGTTGCTGAGGTTAATCCTTAGTGGTGT
GCAAAAGTCCCTTCAACATCttcgcgaaggtaaaaaacctGTTCTGAATT
ACAAATCAGTTCTTGCGTTTACAAAGATATTATTCAGCGAAAACCATTTT
GGAGATATTGCTCTTGAATTTTTGTCCTTTAGGGAACTACAGTTTAGTAC
TGTAGGATTGATGACAAAAGAGAAAGGTTCAAATATTGTTCAAAGAATGA
TTTGtgacttggaaaaaagattttctgggAAAGATTCGTACGGCGAACTA
ATGCTTACACGTGTAAGAAACTTGTTATTCTTAAAAGATGAGGGTTACAG
TGAATTTGCATGGAGAATACCGAATGCAAGATTTCCTAATCGGGATGTCG
AAGATTTTCTTCGAAGCAATGAAGTCGTTTTTACTTATCAGCTCCAGCAA
CAAGATATATCTACCGTCAAACGTTACCTACATGTTACTAGTGGCAGCCG
TGATGATTTTAATGGAATAGTTAGACCGTCTGGAGAAGGTTGTGTAGaga
tgattctacaaaaggatTTTAACGTTTACGAAAAAGCCAAGAaaagatat
tttgattttatgatcgagttgaacaatttgaaattaaaactcAAATCCTA
TCCTCGTGTTTTTCGAAAGCTTTAAACTTTATCACAAATATTgactttaa
agggacataaaagtactaacgaaatttgtaaacaaaccgtatgcagcggg
atgcaaaatcaaaacaaacgtcacatgtcaaaataaaaaataaaaacaaa
tttg
Run BLAST on NCBI

transcript from alignment at scaffold_375:29007..35373+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062945 ID=TCONS_00062945|Name=TCONS_00062945|organism=Clytia hemisphaerica|type=transcript|length=6367bp|location=Sequence derived from alignment at scaffold_375:29007..35373+ (Clytia hemisphaerica)
AAAAGATAGAACAATACATAGATTTACCCAAAAAAGTAATTTTGGTATGG
TGGATAGTAGTGACTCTGAAAGCAATGAGGATCCAAGCTCTAATGAAGAA
TTTGAGGAAAGTGAAGAAAGTGAAGAGACTGAGGATGATTATAGTATTAT
GNTGAAGAATTTGAGGAAAGTGAGGAAAGTGAAGAGACTGAGGATGATTA
TAGCATTATGGACGATGATGATGATCTATCAGACGGTGAAAACAACAATG
ACTTGGCGAGCTATAgcgatgaagaagaaaatgaagacaaaTGTCCAGCA
GTAAGTTTTCGTTCAAAGTCCAACTTACTactttttacaatttctttgtt
ttgaaattctttatcAAAGGGGCTGTTACTTTGGACATAATAGGCTCACA
ATATGATTAATTTATTTGTATTCCaatattattttataagaaccagaaaA
TAACGTTAGACTCCTAATAAtaagtttaaaaataaaaaagagtttTCTAA
CTtgtcaaacaaatcaaaatgacattgtaattattgctttctttgatttt
agaTGGATACATTGCAGTGTTTATTGTGCTCAGTCAAACATTATCCTGTC
AAGTTTGCCATCCATGGTATCATTGATAAAATACACCTTCCTTGTCTCAA
TATAAAAAACATTGGGCCAATTCATTTACCGTTGTGTGAGTCACAAGCTC
AAATGATCATCAGTGGAGACTTGACTGACTCATCCAAAATGTTGTACGTT
CATTTACGTCTCGAGGGTTCCTTCCAATGTAATAAAAGATGCTTGGCTgg
tttttgaataaaatgctAGATGAAAATTCTAAGTTGAATCCTTACTGATC
CTTACTATTCCCAACAACTTTAATATTATTTCCAATTGAGACACTTCTAT
GATACTATGTGtttctttgaaacaaaaattcaaGTATTATTTGTCCATTT
GTTTTAGGAATTATAAGGAATTTCCAAAAGACGAGTacacttttgaaaac
ccaaaattCGATCTCACAATCCAATCTATATTTgagaaagtgaaggagaa
attCGGTTTCGAGATCGATTTTTTCCTTCATGAACTTGTAATTAGTGGGA
AAGGAAACCAgttttcaagaaatttcaatGACGTTGAAGAAAACCAATTT
GGCACTCTCATAGTACAGCTACCATCTTTATTCACTGGAAACAATGTAAC
CATTCACCATGGCAAGGAAACTGAAACAATCAATTTTGATCGAAAAGAAT
CACAGAGTGAAATCATCTATACTGCTTTTCACTCAAACtgcaaatacaaa
atgactccATTAAAATCTGGCTATCGATTGGTTCTTTTCTACAAATTAAC
AAGCATCGATTCTACAGAACGTTTCAAACTTCTTGAAGAAAGCTCAAAAG
TTAAACAAGAAATTGCTGGCACTTTATCAGAGGTAAAACCTACAATTTTA
CCCTTTACATTATATATTATCTGCTGTGGCtcacaaagaaaataaaagat
tgaAACATTCATATTGTATAATGTCCAGATAACGTAAGTTatcattaaag
gttttgtttttaagtaagagtgatatcgttttaCTCTTCAACTTTAATTT
ACaggctttttggacctacctggaggtcctataaattaaccgttgtctgt
ccgtccgtccatCCGTTCGTCTGCTACCAGCTTTTCTTaagattggctca
ttactttttgccggtgtttggcacaaagatgcaaaatgtaACAGAGTCtg
attttcagaagaaaaaaatttccggcctaaaatgccgaaaatatgccgga
aaacccgtTTTTTTGCCATTCTTGGGGATTTCATCAtcagtttttgctga
tttttttgcacaaagacgcGTATTAggaatgctcaaaacatgaccaagtc
cgatttttaagaaaaaaaatttccagtcgaaaatgccagaaataggccgg
aaatcgccgtttttgaagattttcatcagactttttccttatattttgtt
gtttttccacacaaaaacattattaataacaATGCACatcatcaagcatg
gttcaattgtcaatataaCTGATTTTTGTAgctggaactttctaaaaatc
tccggaacagccgatttttgctggaaaaacggtatttcttgaatttctcg
agctctactttatattttttcatgaattttgcaCAGCGATGCAATATGGT
AATATCTAAAATGTGACAgtttctgatttttgaaaaacatatttctccag
ctgaaaatgctggaaatatgccggaaaacctgGCTTTTTGGCATTATTTT
GAGATTTCATAAAAtagttttctctgattttttgcataaagatgtgTTTT
Aggaatgcccaaaacatggctgagtccagcttttgagaattttttttgcc
gGCCGAAGATGCCGGCATTTTAAGAATTATGCTGGAAATCGCcggttttg
cagattttcatcagactttttccttatatttcgttgtttttttcacacaa
aatcaTTATTAATGACAATGCCagcaagcatggttcaattgtcaataaaa
ctgatttttgcgaccagaactttctatttatttttNtaacaatgctcacc
atcaagcatgattcaattgtcaataaaactgatttttgcgaccagaactt
tctatttattttttccctgcaacccttccctctctccccatcaacaatca
atgatgaatttattgcgttatgcattttcgctaaacgctatattttctga
ctgatttttttttctttcatttttctcctcgcattgctatctaactttca
tcatcaggtaggtccattcagcatctaggttgttgatattgaattgacac
ggatgtggagcaagattggtcagaaagaggaaaagaaaaacatttttttt
atatcagcacaatataataataggcagacactgtcctgagattaaatatg
tgtctgatatgaaacgggaacacttatgtaaaaataattatctctaattc
atatttttttctcagCTCAATAAAAGTCGCCGGAAGCATTTCGGGATAAT
GTTGGAAAATAAGTACCCAACGTCACCTTATAAATGTGATAATGACTACT
CATTGAAAGGTCGAGATTTATGTGTCAAAAATATGTTGCAATCAGCCAAT
GAAATTCTACCAAAAGAAGAACAATATGTGTTTCATGTTACAAATTTTAA
CGGTAAGTAATTCATTCATGACGTAAGCTTAATTCTTGCAGGTTGATTCC
ATTGTTAGAAACCCTTTAACTATTCTATTATTAAATATGTAGAGCATTTT
TAGGGCCGTAAGAACCTTATTGCATCTCAGAATTAACTGGCGCTAGGTCT
TGAAATTTCGATTGGACTCAAAATACTAGGTCCATAtgttaaataaaagt
aataatATATTACactaaaaaaattattcagggcatggcgttctaaatct
agcaaatttttctcgagttccacgcaataacccgatttttcagaaaatag
gaaaattttcgggaaaaatcggagaaacattggaaaatccgGAACACTGC
ACACAATcagtggaaaaaagggaaaattcacgtattcacgcacaaaatag
cccagattcacgcatttacgcagtcaaaaaatggattttaacgttcacgc
attttttttttcaattttcacgcattcacgcaaccgaaaatgcccattca
cgcaaaccgctggggggtgCATTAggcaaaaagagaaaaatttggaCTGG
TCGATCCAGGTAGGTACGTGTCCGGTCTGACATTTACATACAATCATTAT
GTCTTTATACAAtgcaaatgtcaaaaatttacCGTTTACGCCTAATTCTA
ATTTGAAGAGAAGCTATCAAATTTAGTTCAGGGAATTATGTTCAGGGACA
TTgttcgaaagttttttttatggaaaaggATTTGTTTTTCCCTTTCACCG
AATTCAAccctcgaaattttcttcaccTAAATTTTGGATCCAGTTGTTAA
GAATTAAAATATTACTCTGTTTTTTAAGGTGGCAGTGAAAAAAAGATTGG
TCTTTTCAATGGTTCTGCATTATTAAGTCCGAAAAAATTGTGGGATTCCA
CTGGTTTGTCGCTCAACATGCAAAATGATATTCTTTCTTCGTCCCTTCAA
AATCATGAAAGGCTTAGAGATCGTGATTATGGTTGCTCTAGATATTTCAT
TCTTGCTATTCCTTCAAATCGCCATTTTGAATGTTTATGTCATTCAAAAT
CTCCAACGCAGTGTCTTCAATTTTTGTCGGATGAAGTTGACCACACGTCA
CCACAGTTTAAATTATATTTGAAGAATCTTCTAAACACCTATCCTTCTGA
GATGTTCACCAAGAATACCGGTAAAGCGTTACTCGATTTAGTTGTCAAAG
CCAAAGACGTGGAAATTGTTCTAttatattttgacaaaattattgcACAT
TGTTACAATTTTTCAGAAACAATCTATGGTTTACCTGAAAATGCTGAAAG
TCAAATAGCAGAAATGCTCAAATTTGTTCCTTGGGAAGAAATCAAGGATG
TTGTAGAAAATGTCATTGAAACTTTTGGGTTCAACCAGTATTACAACTGG
ATGACTGTGTTTTTTCAATGTGAGATTTTTGATATTGCTCACAAAGTCAT
TGAGCTGACTTTAAAAATTGATCCATCAGTATCAAGTACACAAGCTAACT
ATCGATCCTTgtggaattggattttcaacaGTGTCATTATATATAAAGAA
TTATCGACGTGTTGGTTGGATGATATTACTGAGTGTGTAATTATTTCTTC
TGACTTACAGCTACTCCATTTATTATGTGATAAGCTATTGTCTAATAAGC
CAGCCAAATTAGCAGCAGCTTTCAATCGCTTTATCAACTGCATTAAAGCT
GAAAAATTGTCTTCTTCTAATGCTTCAACGATTTCATCATTCGTTAAACT
TACTCTGCACGACCCGGCAATCTTTAAAGAGCAACTGGAGACTTTGTTCG
ATCATCTATGGTTATATGACAAAGACCAAAGGATCATTCAAgatgttttt
cttcatttaatgaaaatggaaGATAGGGATTATATCCAAACCGAAGGATT
CAAAATGATCTTCAATCGTTATTTCGATAGACTTCTCGAAAACGCTGCGA
AAATTGATAGATTAGGATGTTTTGCTGAACTTGTTTTCATGGCAAACACA
TCGAACATGGAGTGTTACATTAAGAAGTACCTTGAAAAATGCCGAACAGT
TTCAACGCCTGTCTCACTATTTATGGTCATTAAAAGTATTTTTCGATTTA
CTGAGaaagaaaaacatccaaaatacaTAGGAATGATTGATGATTTAGTG
AAAATAATAATTCCTCTGATTAAAGGAAATGAGAAGAAGAACGGCGAAGG
AGAAAAATACATGTTATGCAACTTAACGGTCTCCCTTTGTTGTCATGGTG
ATACATTCACATGCCAAGTAGATGAGATATTTTCGAATCAATATTTCAAG
AGCCTTTTCGAGCGGTTCACCCTTCAACTGATCGAAGATTTGGAAGAGAT
TCAGCTGCCTAAAACAGAATCAAAAAATCTCAACAAGTTGCTGAGGTTAA
TCCTTAGTGGTGTGCAAAAGTCCCTTCAACATCttcgcgaaggtaaaaaa
cctGTTCTGAATTACAAATCAGTTCTTGCGTTTACAAAGATATTATTCAG
CGAAAACCATTTTGGAGATATTGCTCTTGAATTTTTGTCCTTTAGGGAAC
TACAGTTTAGTACTGTAGGATTGATGACAAAAGAGAAAGGTTCAAATATT
GTTCAAAGAATGATTTGtgacttggaaaaaagattttctgggAAAGATTC
GTACGGCGAACTAATGCTTACACGTGTAAGAAACTTGTTATTCTTAAAAG
ATGAGGGTTACAGTGAATTTGCATGGAGAATACCGAATGCAAGATTTCCT
AATCGGGATGTCGAAGATTTTCTTCGAAGCAATGAAGTCGTTTTTACTTA
TCAGCTCCAGCAACAAGATATATCTACCGTCAAACGTTACCTACATGTTA
CTAGTGGCAGCCGTGATGATTTTAATGGAATAGTTAGACCGTCTGGAGAA
GGTTGTGTAGagatgattctacaaaaggatTTTAACGTTTACGAAAAAGC
CAAGAaaagatattttgattttatgatcgagttgaacaatttgaaattaa
aactcAAATCCTATCCTCGTGTTTTTCGAAAGCTTTAAACTTTATCACAA
ATATTgactttaaagggacataaaagtactaacgaaatttgtaaacaaac
cgtatgcagcgggatgcaaaatcaaaacaaacgtcacatgtcaaaataaa
aaataaaaacaaatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039430XLOC_039430Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062945-exon-scaffold_375-1491911889:29007..29306TCONS_00062945-exon-scaffold_375-1491911889:29007..29306Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1510915933:29007..29306TCONS_00062945-exon-scaffold_375-1510915933:29007..29306Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1575043694:29007..29306TCONS_00062945-exon-scaffold_375-1575043694:29007..29306Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1491911889:29559..29749TCONS_00062945-exon-scaffold_375-1491911889:29559..29749Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1510915933:29559..29749TCONS_00062945-exon-scaffold_375-1510915933:29559..29749Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1575043694:29559..29749TCONS_00062945-exon-scaffold_375-1575043694:29559..29749Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1491911889:29964..30438TCONS_00062945-exon-scaffold_375-1491911889:29964..30438Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1510915933:29964..30438TCONS_00062945-exon-scaffold_375-1510915933:29964..30438Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1575043694:29964..30438TCONS_00062945-exon-scaffold_375-1575043694:29964..30438Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1491911889:32022..32208TCONS_00062945-exon-scaffold_375-1491911889:32022..32208Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1510915933:32022..32208TCONS_00062945-exon-scaffold_375-1510915933:32022..32208Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1575043694:32022..32208TCONS_00062945-exon-scaffold_375-1575043694:32022..32208Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1491911889:33473..35373TCONS_00062945-exon-scaffold_375-1491911889:33473..35373Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1510915933:33473..35373TCONS_00062945-exon-scaffold_375-1510915933:33473..35373Clytia hemisphaericaexon
TCONS_00062945-exon-scaffold_375-1575043694:33473..35373TCONS_00062945-exon-scaffold_375-1575043694:33473..35373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:29007..35373 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.00389921	0.475226	0.60754	0	0.092068	0	0	1.43303e-10	0	0.482154	0.100389	3.31541e-10	0.111439	0	0.00115512	0	0	0	0.249356	0.731458	0.34438	0.214286	0	0	0.00589916
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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