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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062960 ID=TCONS_00062960|Name=TCONS_00062960|organism=Clytia hemisphaerica|type=transcript|length=1985bp
TCTATCTAATGGGTTTCATAAAAGCCCTGTCGTGACTCTATTCATTACAG
AAGACAATACATACAGTGTAATAATCCTCTTTGAGCGAAACGGTGGAGGG
TACTTTTTAACCATAAATGGATAGAGTTAGGCTACAGCTTTTATCTCCGT
TGGAGTGGAGTTGTATACACCCCTATTGAGTGAGACATGCTTGAATAAAA
GTATTgtcaaagtcaaaaaaataattttgtcgaATTAGTAATAGTCTGTG
ATTTGACTTTGAAGGATACTAGTTGTCTTGTGGTTTGCTATCAACTGAGA
agtaTCAATATGGCGGTGGATAAGAAGAAAGCAGTATTGGTGATCGTATG
TGTTGTAGAGTTTATCATTCTTGCAGCATCAACTGGTGGCAACCAATGGT
CCAAATCGATACttGGTGACTCTGGTTTATTTAGATCTTGCAGGTCTGGA
AATTGTTATACCTATAGCAGTGATGATGTCTCTGGAGAATTACGAGCAAC
TCAAGCATTCATGGTATTATCCGTACTGACCACAATAGTAGCATGTGTTC
TCAGTATCTACCATTAtctaaaagataaaatccaagtTAAAATTATTGCT
TTGGTTATGGTAATTGCATTTGTCTTGGCGTTGATTGGTTTATCTGTTTA
CACTGATAATCACAGCGGCGCTGACTTTGGTTGGTCGTACGCTTTGGGAT
GGGTCGGCGCTATTGGTGCCCTTGTCGCTGGTGTTGTTGCTTTCATCTCC
AACCGTTAAAGAACCTGATTTTGACATGCTAACGTATGGCCATCAACTTA
GAAAAACGCTCTATTCTTGATAAACTCTTTACCAGTCTATCTTCACAAGT
CTACCATGTGACCAAGCGATTGCAGTTGTGTTTGAAAATATCAGGCTATG
ATGGTGGAACACCAACTCTTGATCTGCTTGAGTATTTGACTTTGTCTTTC
AAAACGACCTTTCTAAAAACCCCGTTTAGATTATTTAATAGCCTTAGATA
TTATTTTcagaaagttattttttttttattcatagtTCGTAATCCTTTTT
GTGTGGTTTATTTTTTTCACAGACATTTAAAGATACGTTTTTTATTCTCG
AATATTTATCATAGAAAAAGTTTTATAAGAGATTGATGGTCAATTCTAGA
TCAAAAcctccaaaatcgattttgtcGAGCAAGGATCGTCACAGATGTAG
TATTTTCTACATACGTACTTAGAGTTTTATACTACTtttccatttaaaaa
aattttgcattGTCTGGTTTTCAATCCCGGGATTGCAATATATTTAGATT
TCTGTATATTTAGGTAGAATATAGAAATCCAGAAAATCATGACTAAAATT
TGTCGTTTTATCTTTGATGTGACCTGCAGTAGGCTCGAGGCTCTTCCTTT
CATTGTACTGCgattgatattttgaaattactTCAACCGAATTTGATTAT
TCTGACTCTCAGGGTCTAATGCTTGAAAAGCCCCTTCCTTATTTCATAGC
CACAATGTAGCATGATCTCATAGAAGGGGCAAAAATTTTTATAGAAATTC
CAATGAGGAATTAAATTTTGTTGTGTTCCCAGTTAAAAGAAAACCCTTTG
AATAACATGGTTTTAGAgtccaatattttttcattgattttaaaatgaat
ATAGAACTAAAGTAGGATTTCAGTAGGACTGACTTTATAGGATATCCTTC
Ccagctaaattttccagtgggtgaggctccaccgggtctgtgacacagtg
gAAACTTAACAAAGACATAAATACTAATAcaaacatttttataagaatga
tgtttttcaattccatcatggatattcttaacttttccgGAAAATCATCC
TTAAATATTCTTAAGGTATTCTTAGGTTTCCAATTCCAATTTCTACCAGA
ATTAACATGTAATTACCCATGTGAAAGATTTTAGCATTCCTGGGGGTTGA
TGAGGGATTAACTGCTTACCTTGATAGCACGAAGC Run BLAST on NCBI protein sequence of TCONS_00062960-protein >TCONS_00062960-protein ID=TCONS_00062960-protein|Name=TCONS_00062960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MAVDKKKAVLVIVCVVEFIILAASTGGNQWSKSILGDSGLFRSCRSGNCY
TYSSDDVSGELRATQAFMVLSVLTTIVACVLSIYHYLKDKIQVKIIALVM
VIAFVLALIGLSVYTDNHSGADFGWSYALGWVGAIGALVAGVVAFISNR Run BLAST on NCBI transcript from alignment at scaffold_375:212536..217382+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062960 ID=TCONS_00062960|Name=TCONS_00062960|organism=Clytia hemisphaerica|type=transcript|length=4847bp|location=Sequence derived from alignment at scaffold_375:212536..217382+ (Clytia hemisphaerica)
TCTATCTAATGGGTTTCATAAAAGCCCTGTCGTGACTCTATTCATTACAG
AAGACAATACATACAGTGTAATAATCCTCTTTGAGCGAAACGGTGGAGGG
TACTTTTTAACCATAAATGGATAGAGTTAGGCTACAGCTTTTATCTCCGT
TGGAGTGGAGTTGTATACACCCCTATTGAGTGAGACATGCTTGAATAAAA
GTATTgtcaaagtcaaaaaaataattttgtcgaATTAGTAATAGTCTGTG
ATTTGACTTTGAAGGATACTAGTTGTCTTGTGGTTTGCTATCAACTGAGA
aggtaagattcttttatttacGAGGTGGTTTCTTGCAATGATAAGAGACC
AGATGGTGGAGGAATCTCTAGAAatgtagccaaacgtaaatttcGCCAAA
ttcacgataaacttccaattaTGTGAGATACTGAGTCTTCGGCAGGGTTT
CAAAAAACTCGGAGAGACTACCTCCCAGTTTGATGAGTTTGGCTAAAAAA
TTCTTCCCGGCGATAAAATACTTTAGGAAAGTTagtgtaatttttgaaat
tttcataatgtttttgagttttaacgaTGAAATTTGGAATCTTCACCAAC
TAAAAAACAGGCGGTTATCTTTATTCAGTTGAATCGTCTGTTCGTTCATA
TAATCTTCACGCTATTTTTACTTAGTCAGTGATAAAGGGGTGTTATACTC
GGATAGCAAAGCCCTGTCCGTTTACAGTTAGTCTAGAAgatagacgacta
attcagactaagtagaaacaaagcaaaaaataatggagggaacaatatTA
CAAACTAAATCCATGaattaaagattaaacattaatCGTATTATCAAaaa
acgcctatactactgtattacaagCATTGTAAACAACTCCAGTCTAGTTT
ACAGTCAAACAGTGATAAAGTTTGCCTCGATAAATCATAGTTGAACTGAA
AAAAACTAGGTGTGCGTGACTTTGATGTTCGTCTTAATTAAGTTTGATGG
AAGCGTCAACAGGAGTATTGAAATCCGAGTTATCTTAGGAATAAAAAGCT
GAACTTTTCTTCTTCAACTTtatattctattttatttttgttaatattcc
acttctgaatatattttcaacgcgtataattttttattctcTGACCAAGC
ATGAGAAGATAACTATTCCATGTATGAATGCACTAAATATAACCACATAT
ATAACCTgcaccatagatttataaatcccgaagggctagatgtcgggctt
taagccatcgcaggcaaaaaagtgaatatcggaaaaaaaattgctttcga
agcttctgattggtcaatcgctgaaattctattgtaatgttacgtgactt
aggtaggatttcctacctaaccacgaaacacttttcagcaaaaacttTAC
ATCTAGCCCTTggggctttataaatctttgaCCTGCACTAAGTAAAAGAA
AGGCTATAAAAAGctaaacacttttttataagaaccagtaagttTTCGCC
CAAGGCTGGGTTCctcttaattttttcaaatttataggCTTAAATGTGTT
TAATAAGcttaataatttctttattggaaaacttagAATATGCTCAAAAT
CTGctaaaatcagtactttctgatatctgaggttcagattgtttttaaat
tgtatttaggttttggctaattttcagcctcgtgttcttatgaaattatt
cctataaaaaagcgtgcattCCCTTGAAACCAATTATGATGTGCGAAATA
CCATAATGAGTGTGCACGCCCTCATTGTCTTCTATTCAATGACCCCAATC
AGTATTTTTTCTCGTacacaattttctttttaacattttcttgtCACATC
ATACGATTGTAAGtattatacagggtgtccctaataaaagtatcgagttt
gaacatgcgattgagtaaaaaagtttgtgtgtgttatcgctaaaatataa
gaacgttctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtctccatcacataggctcattacaaaa
ggtagttacaacgtataaattaatcaatagccctttttactattcccctg
ttgcataaatgtacgtctttaaaaattaaaattaataaaaattcaaattc
tctCGGGGTAGTAAAAATTAGTTATTCCgtttttattgttacgtaatgac
aaagaaaaaagagggagagctcaaaatacaattttgtgaacacgcacata
aaactttctactcatagttgtgtttcgactcgatactttaattagggaca
ccctgtacatacATGGGGAGTACATAAATCAAATCTTGAGTGACCATTCA
GACAGACGTATATTGTGCACATTTAGTtgtgttttaactttttgattttt
gggaaagtaAAGCCTGGAATAAAGCACTACAATCTTATTAAAAGCCTTTT
TTGGATGTTTGCAACAGACTTAGATTATTCTttgtgattttgtttttttt
acagtaTCAATATGGCGGTGGATAAGAAGAAAGCAGTATTGGTGATCGTA
TGTGTTGTAGAGTTTATCATTCTTGCAGCATCAACTGGTGGCAACCAATG
GTCCAAATCGATACGTAAGTGCCATCATTCATAATTCGTTTTCTAGACTC
ACTTCATACTGTATTGGAATGTTTTAACACCAATGTATTCAAGGGTTTTG
TAATTGACAGAGAATCTGAAGGAatacacattttcaaaaattgggctGTT
CTAGtacggaaaaacggaatttcgCAGTAGCTTTCGGTTGCGGAATCTTG
GATCTCGTTGAAGgaaatataaagaaatttgACGGAAAAGTGGAATCTAA
TCATGCTAAacgaaaatagccattttttattgCACTGTTAGCAAATAAAA
AGTTTGCTTTattgtgggaaggtactggctgGTTAGCCggatcgggtacc
ccctgaaaacCCTCCTGTCAGTGTTTCTGGATACTAAGGACGTGCTTCGT
TTTGAAGTTACCTGATTAGGGTCATAAAAGCTACTAAATTAGTCAGGGTA
AACATTTTTATCTCTAaaagattttttagattttgcaCAACACCTAATAC
aatatttgttcaaatttcAATTACCTGTCCAGAAGACAAGACTTTTTact
gtttatctttttttttctttatagttGGTGACTCTGGTTTATTTAGATCT
TGCAGGTCTGGAAATTGTTATACCTATAGCAGTGATGATGTCTCTGGAGA
ATTACGAGCAACTCAAGCATTCATGGTATTATCCGTACTGACCACAATAG
TAGCATGTGTTCTCAGTATCTACCATTAtctaaaagataaaatccaagtT
AAAATTATTGCTTTGGTTATGGTAATTGCATTTGTCTTGGCGTTGATTGG
TTTATCTGTTTACACTGATAATCACAGCGGCGCTGACTTTGGTTGGTCGT
ACGCTTTGGGATGGGTCGGCGCTATTGGTGCCCTTGTCGCTGGTGTTGTT
GCTTTCATCTCCAACCGTTAAAGAACCTGATTTTGACATGCTAACGTATG
GCCATCAACTTAGAAAAACGCTCTATTCTTGATAAACTCTTTACCAGTCT
ATCTTCACAAGTCTACCATGTGACCAAGCGATTGCAGTTGTGTTTGAAAA
TATCAGGCTATGATGGTGGAACACCAACTCTTGATCTGCTTGAGTATTTG
ACTTTGTCTTTCAAAACGACCTTTCTAAAAACCCCGTTTAGATTATTTAA
TAGCCTTAGATATTATTTTcagaaagttattttttttttattcatagtTC
GTAATCCTTTTTGTGTGGTTTATTTTTTTCACAGACATTTAAAGATACGT
TTTTTATTCTCGAATATTTATCATAGAAAAAGTTTTATAAGAGATTGATG
GTCAATTCTAGATCAAAAcctccaaaatcgattttgtcGAGCAAGGATCG
TCACAGATGTAGTATTTTCTACATACGTACTTAGAGTTTTATACTACTtt
tccatttaaaaaaattttgcattGTCTGGTTTTCAATCCCGGGATTGCAA
TATATTTAGATTTCTGTATATTTAGGTAGAATATAGAAATCCAGAAAATC
ATGACTAAAATTTGTCGTTTTATCTTTGATGTGACCTGCAGTAGGCTCGA
GGCTCTTCCTTTCATTGTACTGCgattgatattttgaaattactTCAACC
GAATTTGATTATTCTGACTCTCAGGGTCTAATGCTTGAAAAGCCCCTTCC
TTATTTCATAGCCACAATGTAGCATGATCTCATAGAAGGGGCAAAAATTT
TTATAGAAATTCCAATGAGGAATTAAATTTTGTTGTGTTCCCAGTTAAAA
GAAAACCCTTTGAATAACATGGTTTTAGAgtccaatattttttcattgat
tttaaaatgaatATAGAACTAAAGTAGGATTTCAGTAGGACTGACTTTAT
AGGATATCCTTCCcagctaaattttccagtgggtgaggctccaccgggtc
tgtgacacagtggAAACTTAACAAAGACATAAATACTAATAcaaacattt
ttataagaatgatgtttttcaattccatcatggatattcttaacttttcc
gGAAAATCATCCTTAAATATTCTTAAGGTATTCTTAGGTTTCCAATTCCA
ATTTCTACCAGAATTAACATGTAATTACCCATGTGAAAGATTTTAGCATT
CCTGGGGGTTGATGAGGGATTAACTGCTTACCTTGATAGCACGAAGC Coding sequence (CDS) from alignment at scaffold_375:212536..217382+ >TCONS_00062960 ID=TCONS_00062960|Name=TCONS_00062960|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_375:212536..217382+ (Clytia hemisphaerica)
ATGGCGGTGGATAAGAAGAAAGCAGTATTGGTGATCGTATGTGTTGTAGA
GTTTATCATTCTTGCAGCATCAACTGGTGGCAACCAATGGTCCAAATCGA
TACttGGTGACTCTGGTTTATTTAGATCTTGCAGGTCTGGAAATTGTTAT
ACCTATAGCAGTGATGATGTCTCTGGAGAATTACGAGCAACTCAAGCATT
CATGGTATTATCCGTACTGACCACAATAGTAGCATGTGTTCTCAGTATCT
ACCATTAtctaaaagataaaatccaagtTAAAATTATTGCTTTGGTTATG
GTAATTGCATTTGTCTTGGCGTTGATTGGTTTATCTGTTTACACTGATAA
TCACAGCGGCGCTGACTTTGGTTGGTCGTACGCTTTGGGATGGGTCGGCG
CTATTGGTGCCCTTGTCGCTGGTGTTGTTGCTTTCATCTCCAACCGTTAA
ATGGCGGTGGATAAGAAGAAAGCAGTATTGGTGATCGTATGTGTTGTAGA
GTTTATCATTCTTGCAGCATCAACTGGTGGCAACCAATGGTCCAAATCGA
TACttGGTGACTCTGGTTTATTTAGATCTTGCAGGTCTGGAAATTGTTAT
ACCTATAGCAGTGATGATGTCTCTGGAGAATTACGAGCAACTCAAGCATT
CATGGTATTATCCGTACTGACCACAATAGTAGCATGTGTTCTCAGTATCT
ACCATTAtctaaaagataaaatccaagtTAAAATTATTGCTTTGGTTATG
GTAATTGCATTTGTCTTGGCGTTGATTGGTTTATCTGTTTACACTGATAA
TCACAGCGGCGCTGACTTTGGTTGGTCGTACGCTTTGGGATGGGTCGGCG
CTATTGGTGCCCTTGTCGCTGGTGTTGTTGCTTTCATCTCCAACCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062960-exon-scaffold_375-1491911889:212536..212837 | TCONS_00062960-exon-scaffold_375-1491911889:212536..212837 | Clytia hemisphaerica | exon |
| TCONS_00062960-exon-scaffold_375-1510915933:212536..212837 | TCONS_00062960-exon-scaffold_375-1510915933:212536..212837 | Clytia hemisphaerica | exon |
| TCONS_00062960-exon-scaffold_375-1575043694:212536..212837 | TCONS_00062960-exon-scaffold_375-1575043694:212536..212837 | Clytia hemisphaerica | exon |
| TCONS_00062960-exon-scaffold_375-1491911889:215140..215249 | TCONS_00062960-exon-scaffold_375-1491911889:215140..215249 | Clytia hemisphaerica | exon |
| TCONS_00062960-exon-scaffold_375-1510915933:215140..215249 | TCONS_00062960-exon-scaffold_375-1510915933:215140..215249 | Clytia hemisphaerica | exon |
| TCONS_00062960-exon-scaffold_375-1575043694:215140..215249 | TCONS_00062960-exon-scaffold_375-1575043694:215140..215249 | Clytia hemisphaerica | exon |
| TCONS_00062960-exon-scaffold_375-1491911889:215810..217382 | TCONS_00062960-exon-scaffold_375-1491911889:215810..217382 | Clytia hemisphaerica | exon |
| TCONS_00062960-exon-scaffold_375-1510915933:215810..217382 | TCONS_00062960-exon-scaffold_375-1510915933:215810..217382 | Clytia hemisphaerica | exon |
| TCONS_00062960-exon-scaffold_375-1575043694:215810..217382 | TCONS_00062960-exon-scaffold_375-1575043694:215810..217382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:212536..217382 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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