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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062971 ID=TCONS_00062971|Name=TCONS_00062971|organism=Clytia hemisphaerica|type=transcript|length=286bp
AANGTTTTATTTAACACTTGCTGTTGGTCTCTGCTACGGAGAGACAAAAG
CTGGACAGGTGCTTGGAgagattttgttgaatattaCAGATATTTTGAGA
ATTGATTTACATGGCGTTCAAGTTCTCATCCCAAACATATTACAAGCTAT
TGAGCTCATCCTGCCGTCAAGTGATATTTCTCTCGGATATGACTTATCAC
TGGTCATGCTGCGACGCTCCTGCATTCACATTCTACTCTCAATGCTTTGT
TTACCATTGCATTTTCTTCAGCTGCCAATTCAAGGT Run BLAST on NCBI transcript from alignment at scaffold_375:559..1723- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062971 ID=TCONS_00062971|Name=TCONS_00062971|organism=Clytia hemisphaerica|type=transcript|length=1165bp|location=Sequence derived from alignment at scaffold_375:559..1723- (Clytia hemisphaerica)
AANGTTTTATTTAACACTTGCTGTTGGTCTCTGCTACGGAGAGGTATTGC
TCCTCGTTTGTCTTTTATATAAAAAGTATAATTTTAAAATGAACGGCTGT
TTAACTCCCCATTAATTCACTTTTATCACAACAACATATATTAACACTTG
CTACTGATCTTTGCTATAGAAAGGTATTTTTCCTCTTTTATGTAAAACGT
AAACATTTGTTTAACTTTCCTTTAAATGTTAGTATTATTAATTGTTTAAA
CAACTACCGGGTGACCCACGAAAAAGTATAAGAGTTTGGAGGGTAATTCT
GTCGAAAAAGAATTGAATTTTAGCTAAATTCTTTTTTCATGGTAGAGAGG
AAAGGCAAACTTAAATTTTGATGTATCATTTTTTAATTTTGGAGAGGTAG
TTATCGAGATATGGAGGTATAAAGTCAAAAGTCATTATAAAAAAACAGTT
AAAAAACGTCAAAAAAGACAGTATCAAATTTGTATCAGAACAAACATCTT
TCCTTTGATCATTTAATATTTCTTTGAAAAAATAACAACATTTAAGTTAG
TTAGTGGGTCACCCGGTACATCTAATTAAGATCAATGACTCATTATTTAG
ATTATGCCTAATAAGTTCTTTCTTCATTTTAGACAAAAGCTGGACAGGTG
CTTGGAGAGATTTTGTTGAATATTACAGATATTTTGAGAATTGATTTACA
TGGCGTTCAAGTTCTCATCCCAAACATATTACAAGCTATTGAGCTCATCC
TGCCGTCAAGTGATATTTCTCTCGGGTAATTAATTTATCAATAAAAATCT
TCATTCTTGATATCGTGATTTATAATACTGTGTTAATGATTGTTATTTTT
ATCAAGCTTCTTAAGTAAAAGAAAACAAACGCATCTTACTTTCTTGGTGC
AATAAAAATGGTCTTAGAAGCATACTGGACTGTTTGTCTTTTAAAATATC
TTTTTATAAATTCTCTTTGTCCAAAATACTTTTCGTTTATGATATATGAA
TGAAATGATTAGCAAGCCTTTTTCAAAAGATATGTTTCGCATGATACTTT
TCTCTTACTCTTTAGATATGACTTATCACTGGTCATGCTGCGACGCTCCT
GCATTCACATTCTACTCTCAATGCTTTGTTTACCATTGCATTTTCTTCAG
CTGCCAATTCAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062971-exon-scaffold_375-1575043694:1681..1723 | TCONS_00062971-exon-scaffold_375-1575043694:1681..1723 | Clytia hemisphaerica | exon |
| TCONS_00062971-exon-scaffold_375-1575043694:949..1091 | TCONS_00062971-exon-scaffold_375-1575043694:949..1091 | Clytia hemisphaerica | exon |
| TCONS_00062971-exon-scaffold_375-1575043694:559..658 | TCONS_00062971-exon-scaffold_375-1575043694:559..658 | Clytia hemisphaerica | exon |
| TCONS_00062971-exon-scaffold_375-1510915933:1681..1723 | TCONS_00062971-exon-scaffold_375-1510915933:1681..1723 | Clytia hemisphaerica | exon |
| TCONS_00062971-exon-scaffold_375-1510915933:949..1091 | TCONS_00062971-exon-scaffold_375-1510915933:949..1091 | Clytia hemisphaerica | exon |
| TCONS_00062971-exon-scaffold_375-1510915933:559..658 | TCONS_00062971-exon-scaffold_375-1510915933:559..658 | Clytia hemisphaerica | exon |
| TCONS_00062971-exon-scaffold_375-1491911889:1681..1723 | TCONS_00062971-exon-scaffold_375-1491911889:1681..1723 | Clytia hemisphaerica | exon |
| TCONS_00062971-exon-scaffold_375-1491911889:949..1091 | TCONS_00062971-exon-scaffold_375-1491911889:949..1091 | Clytia hemisphaerica | exon |
| TCONS_00062971-exon-scaffold_375-1491911889:559..658 | TCONS_00062971-exon-scaffold_375-1491911889:559..658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:559..1723 - |
Blast
The following BLAST results are available for this feature:
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