TCONS_00062973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062973
Unique NameTCONS_00062973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062973 ID=TCONS_00062973|Name=TCONS_00062973|organism=Clytia hemisphaerica|type=transcript|length=2370bp
tttctggaatggcccaatcagtagaagagaccacttttgttttttttgca
gatttcgataaacttctctcagggattacttgcagtgaggctggaacctc
gatttttgaggattacgattttaccagctttttagcgatttttgccttgc
taacccaaatctcgcaacctcctTACCTTAAANgaggttccagctacact
gacttgtcaatgtacatgtagacatgtgttgtgtcaacttgtcagcattg
tattgttgtaaaggaaaagataagagaggtaagactagcctagtttctaa
tcctatCCTAGGAGTTTAAGTTTTTAGACTGATAGTGATATAGTAAGTTG
CCATGCCATTTCTATTATGtccacaaaaaaataaaaattggctTACCATA
ATATGACATGATTATTGATATGAAATCTTACGAAGCTTACGAGATAAAAT
CATAAACTGATGTTTATGTAAGATGAGTTGAGAGTAAGACTGTaagaatt
tttaaagtttttggttCTTTGGCCTTTTCTCACTTCCTCAATAGTGGTGC
GTTTagaatttgtttatatttcgcTAAACCAAATTGTCAACTAAACTACA
ACACCACCGTGCTCCTAAATTTCACATGAATATTGCAGTATTAAAGACCA
ACTCTGCCCGCTGCTTTCAAGTTCTTTTTTCAAGATGGCTGAAGAAGTGA
GACGCCGTGTGGTCGAAACTACTGATGATGAAGACTCAAAACTTGTCTTT
GAGACATCAGAAGATGTTAAAGTTACCAGAACTTTTGATCAGATGAAACT
AAAAGAAGATCTCATTAGAGGAATATATGCATATGGTTTTGAGCGACCCT
CTGCAATTCAACAAAGAGCCATCTTACCAGTTACAAAAGGAAGGGATGTT
ATTGCACAGGCCCAATCAGGAACTGGTAAAACTGCTACTTTTTCCATCTC
AGCACTTCAACAGATTGACACAAGGGTACGAGAAACGCAAGTACTTATTC
TGTCACCCACAAGAGAATTAGCgggacaaattcaaaagGTTGTATTAGCG
TTAGGTGATTATATGAGTGTACAATGTCATGCATGTATTGGAGGTACAAA
TATTGGGGAAGATATTCGAAAATTGGATTATGGACAACACATCGTTTCAG
GAACTCCTGGCAGAGTTTTTGATATGATCAAACGGCGCAACTTAAGAACG
AGGTCCATCAAGATGTTCATCCTTGACGAATCGGATGAAATGTTGAACAA
AGGGTTTAAAGAACAGATTTATGACGTTTATCGTTTTCTGCCACCAGCAA
CTCAAGTCGTTCTGGTTAGCGCTACCTTACcacatgaaattttggaaatg
acACGAAAATTCATGACGGATCCAATTCGTATTTTGGTAAAACGTGATGA
ATTGACGTTAGAAGGAATCAAACAATTCTTCGTGGCAGTCGAGCGTGAAG
AATGGAAATTCGAAACACTTTGCGATTTATACGATACACTCACAATCACG
CAAGCTGTCATATTCTGCAACACAAAACGTAAGGTGGACTGGTTAACAGA
GAAAATGAGAGAAGCGAACTTCACAGTAGTTTCAATGCACGGTGATATGC
CACAAAAAGAACGTGAATCCATCATGAAAGAATTCCGATCGGGTACCAGT
CGGGTTTTGATCTCAACCGATGTTTGGTCACGTGGTTTGGACGTTCCTCA
AGTTTCACTCGTCATTAATTATGATTTGCCAAATAATCGTGAATTATACA
TCCACAGAATCGGTCGATCAGGTCGGTACGGACGTAAAGGTGTTGCCATC
AACTTCGTGAAAGCAGACGATATTCGTGTATTGAGAGATATCGAACAATA
TTATTCCACACAAATCGATGAAATGCCAATGAACGTTGCTGATTTGattt
aaaaccaaaaatttaCCAAGCCGCCATGGAAGATTGACGGGGAGATCTCA
AGAACTTACTTATATTGTGTTTCACTCGTGATACTATCTAATTATTTTCA
TTGTACATACTTTTTTATGCCAAGCTTGAAAATTTTTCGACTTGGTTATT
TTATAAGCCAAAATACAAATGTTGTTTTTATGGTAAATAATCTTTATCCT
TCTCGCTGGTGCtaatttaatgggataaattttcgcagggattaaattAA
GTACCAATGGATGGAAAACCAAAAAAACACAACAATGTCAAATAAACTAC
TTTTAAGTAAATGTTAAATGTCATCAAAAAAGCGAAATAATGCGTATATC
AACCAAAGTTAAAATCGCGATTATATTGTCTTCaaatagtgccatccgcg
aaattaagtcgcGGGActtaaatcttaaaatttcgcggataagctcaacc
gcgaaagtttatcTCATTAA
Run BLAST on NCBI

transcript from alignment at scaffold_375:223537..238165-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062973 ID=TCONS_00062973|Name=TCONS_00062973|organism=Clytia hemisphaerica|type=transcript|length=14629bp|location=Sequence derived from alignment at scaffold_375:223537..238165- (Clytia hemisphaerica)
TTTCTGGAATGGCCCAATCAGTAGAAGAGACCACTTTTGTTTTTTTTGCA
GATTTCGATAAACTTCTCTCAGGGATTACTTGCAGTGAGGCTGGAACCTC
GATTTTTGAGGATTACGATTTTACCAGCTTTTTAGCGATTTTTGCCTTGC
TAACCCAAATCTCGCAACCTCCTTACCTTAAANGAGGTTCCAGCTACACT
GACTTGTCAATGTACATGTAGACATGTGTTGTGTCAACTTGTCAGCATTG
TATTGTTGTAAAGGAAAAGATAAGAGAGGTAAGACTAGCCTAGTTTCTAA
TCCTATCCTAGGAGTTTAAGTTTTTAGACTGATAGTGATATAGTAAGTTG
CCATGCCATTTCTATTATGTCCACAAAAAAATAAAAATTGGCTTACCATA
ATATGACATGATTATTGATATGAAATCTTACGAAGCTTACGAGATAAAAT
CATAAACTGATGTTTATGTAAGATGAGTTGAGAGTAAGACTGTAAGAATT
TTTAAAGTTTTTGGTTCTTTGGCCTTTTCTCACTTCCTCAATAGTGGTGC
GTTTAGAATTTGTTTATATTTCGCTAAACCAAATTGTCAACTAAACTACA
ACACCACCGTGCTCCTAAATTTCACATGAATATTGCAGTATTAAAGACCA
ACTCTGCCCGCTGCTTTCAAGTTCTTTTTTCAAGATGGCTGAAGAAGTGA
GACGCCGTGTGGTCGAAACTACTGATGATGAAGACTCAAAACTTGTCTTT
GAGACATCAGAAGATGTTAAAGTTACCAGAACTTTTGATCAGATGAAACT
AAAAGAAGATCTCATTAGAGGAATATATGCATATGGTAAGTAAAGTCAAA
GTTATAGAGGTAAAACTGATCAAAGTTTCTGATTTTTGCTTGCTTTTCTG
ATCACTGATATTGATATGACCTACAACTCTATCTCAGGATATTAATGGTG
GCTATATAACATAGTATTCTTTCTTTAAAATAGTGACCAAAAATATTTTT
GCATTTCCATCCATCATGGTATTATGGTCACTTCCATTTGGTTTGGGAAT
AGGAACTTACCAATGGGCGATTTGCGCTAAATCTGTACCGTGTCCCGTCC
GAAATCATGAAAAATAAAGTCCATTTTTTAAACATAACTCTACTTTTCTA
TGACAGTCTGTAGCCTATATTTCATGGAAATGTACCTTGAAACCACCTTT
TAAGGCCTAATAATAGAGAATATAGGGGGCTCATGGATGGAGCTGTTCGA
GCGAGCGTAGTATGAAAATGATAAATTAGTGGTAAAAAAAATCAAAACTA
ACTTGCACTGGAGAGAGTATCACATATTATAAGTAGGGTGCACACTGGTC
AGGATTTTTTGCGCGGAAGGAGGAAGAATTTACAAAAATGAATTTCAATG
CATTAGGCGACGATGGGAATTGGATGTTCTGTTTACCGTCGCGTTTCAAA
AAATATTTGATGCGGCAAAATTTCATTATTCATTATTCATTATTCCTACC
TGGTGCTTCCAATCTCCAATGAAGTTGAATTCCACCGTGAAAAGGTAAGG
ACTTTCAAATAAAATTAGTTTGGTTTCTAAAAATTGAGGGGAAAATTTTG
GCCTGTCCACCCTATTATAAGGGTTGTAACAGGTGATATTTAAGTATCAC
TAAACTTAGGTGAGATCCTTTTTTTGTTGCATTCTTTTGATTGGCATGTA
GATATCGTAAATGATTTCGGACGGACAAAATTTTCAAAACTAAAGGCTAG
AATACATCAGAAAAATGTATTGAGGAAGTAAGGAAGCTGTAGAACAGCCT
GAAATTGTTTGTATAAAGGCCTTCCTCAAATTAGAATAGATCTTAATATT
CTGTATCACCTTTTTCATCTTTTTTCAGGGTGATTTGCACTAAATTTTTC
CTGTCCCGTCCAAAATCATTTTCATAAAAATCTGTTTTATTTCAAGTTTT
GCTAAACTTTTTCTTTCTACCCTGTTCTACCAGTTAGTCACACTAGGAAA
TCTAGCTTTCAGAAATAATAACATCAGTCATCTACAGGATACATTTCAAC
AACAAGGATGAGAGTTACCTGAATCAAGTTCGCAAGACAATATTAATTAA
AACTTGAAAGTTGGAAACAAAATAAAACGTGCAGCAGCCAAAATCAACCA
ACCAAAATTTGTCATTCAATTCTCGAGCCAGCGCTTCGATTTTTAAGGCC
TTGTTTGTACGCTAAAGTAAAAACAATTACGCACATGTAAATGGGTCATT
GTTTGAGGTCCGGCAAAATTTCCGGGAGATAGCCTATCCGGCAGTGCACG
GATCTAGGTGGGTTCCGTCTCCCTGTAGATCTTTTTCTTCGGAAGTTGAT
CTTCAAATTAGTTTTCAAGGTTGGCTTGGCTCAAATATTTTCATCTATGG
CTCAAATTTTAGGCAATTTCTCAAAGTTTTTGAAAATGTTAATTTCATTA
AAAAGCGCCGGGTTATTTTTTCATGAATCCCTTTAGAAGTTTTGCGGTGC
ATTTTTTTGCTTGAGAGTTAAGTAAACGATATAGCGCTTTCGCAGCATTA
ATCTTTGATACGCATTTTGGCGGGACGCTAGTGTGGCTAACTGTCTACAT
ATTATCAGTAAGTATACAAGTAAATATACTATTATTCCAAATAGAAAATA
CTTCAGAATGTTCCAGTAGTGGTTTTAGTACAATACCTATTTTTACAGGA
AAATTGCCCCGTCCAAAATTAATTCCTATTTTCAAGGTTAAAATAAAGGT
ATAAAAACTTACTTCAATTGGCCTGTTTGAACATTTTTCTTACCACTAGG
TCTTGCTAATAACTTCCTGAATGTTAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGAAACATATTTGAAAAGTTATGATTTCGGACAGGA
CAAATGATTTCGGACGGGACATTTTTTCTAGTACCCCTGGAATCAAATCT
GAAGAGCTTTGAATTTTAGATTTACTCAATTGAAATATGCTCTATCCTAG
ATTACAATATTCAGCCATTCAAATCTTTCTACCCTTCAGAATTTCAGAAA
TATTGTCAATCTTATTGTGATTTCGGACGGGACACTTTTTGGTGTCACTT
CCAATCACCAATGCACTGGGACCTATAGAATGGTTCCCTAATGGTAAAAT
CATACTTTTTGACATGTTTTCAAACACATACATATGAGCTTATACTCTCA
AACTTAAAAAACCTTCAATAAACACTCTTAAAATAGGGGCAATGTGCAAT
GATTTCAGACGGGACACATTTCAGTGTCAAAATGGATGTAAACAGAAAAT
CACTGCTAGAGCAAGATGGAAAAAACGTTTCAAAACACTTTTTTTGTAAA
AAAACACATGAATAAATTGCCTATATGGAAATTTAAAATTCCAGGTCAAA
TACCTTCCTGGAAAGAAAGTGCTACCATAAAACTGAAGCACTTTTTTGCT
AAAAATTGCCGAAACGAGGAAAAACTGACACAAAATTTATGATTGCAGAC
TAATGATAGTCAGTTAAAACATGAAATTTTGCAGAAAGTGTACCATTACC
AACCAGATTACCATTACTAACAGATTTTTTGAAATTCTGTAAAAAGGTCC
AAGTTCCGGAATAGTTTTACTATATTCTGTGAAAAAATCATAACCATCAG
TCAAATACTCTTTCATCTATTAAAGATTGAAGACAAAAATTTGCGAAGAA
AAATGAACCTTGAGCACATAAAATGCTCTTTTAAACACTTTTTTCCACCA
AAAAACAAATAACTTTATAGACTTACCTTCCCCAAACATTGAAGAAGCCT
CTACTAATTAATTAAAGTAAATGAGATGAGATAAGATAAAACCTTAAAAT
CAACCATAGTGTGGTCGTGTTACAAAAATACAGGCTGTTTGTAGGAAAAG
AATAAGATCCAGCTGAAACTTTCTCCAGACCTTCTCTATAGGATGGTTAT
GCCTCAGGAAAAATTCCCCTAAAATCCCACTGGTGGAACATTCTTTTTTT
GGGACATTTCTTTTTTCCCCAGGCAAAATCCTAAGGGCGAAATTTTTTGA
AAATTTCAAACTCATTTTTAGATATCATCAAGTATACCATTCGAAAGCTC
TCGAAAAGTTATATAGAAGACTTTTAAACGGGTATAGCCGATTTCCTTAC
CTAACTCGAGATATTTCATGCGCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGGGGAATT
TTTCCTGAGGCATAACCATCCTATAGAGAAGGTCTGGAGAAAGTTTCAGC
TGGATCTTATTTTTTTCCCTTAAATTATGCTAGACAACCCCACTACCAGA
ATTTACAACCTTTTGTCCAAAGCAAAAGATGTGCTTTTCTCGCCGCCATC
TTGTTTTAGAATGAGAATTAATTTCGGTTCCAGTTCCCACGGTCTTTTTT
CATCCAATGAGATCGCGCTATTTCACTTTCGCTTTCTCTAGTCCAATAAC
ACTGTGGGATTTGAGTCATGTGACATCTCTATTGAAAAACCTGCGCGTAA
TAAAATGGAAATACAGGGGTCACACTACTGGCTACAGGAACTGAAAGCAA
GCAATTAAGGCCAATATTTTTGGTTTTTCTGAAGGACAAAATGTATCGGA
AGCTTTACTGAAGGAGGGATAAGGCTGGGACTATCTATTTAAAAGATACG
GACAAAAAAAGCACTTTTTTGGGTGATAATTAAGATTTTACTTAGAAACT
TTATTCTCTTACCCCCGTCTGGGCCCCCCCTGATATGAGCAAGGGAACCA
TGTTAAAAAACAAACAAGGAATTAATTCCTGCAACTCGAAGAAAATTGGA
AAAAGCTGGTTTTTGACTGTTTCTGATCCTAAAGTGCTATTTTTTGGTAA
AAGCTATGCAATTTATGTTTGGATTTCTAGAAAGCNNTCAAATCTTGTAG
GGTTATTTTTCAAAAAATTGTTGCCAAAATCAATTTTTGCATTTCGCCAT
TTTACCCTACGCAAACCAAGTGCCGAAAAACAAATAACTTTTATAGACTT
TCATTCCTCAAACATTGAAAAAGCTTCTACTAATTAAAGTAAATGAGATA
AGATAAGATAAAACCTTAAAGTCAACCAGAATTTACAACTGTTCTAAACC
TAAAGCAAAGCTTTTCCCGCCGCCATCTTGTTTTAAAATGAGAATTATTT
TTCGTGCCAGTTCACATGGCAATTTTTTCATCCAATCAGATCGTGCAATT
TTACTTTCGCTTCCTCTAGTCCAACAAGACGTAGGATTTGAGTCACACGA
CATCTCTATTGAAAAACCTGCGCAAATTAAAATCTATCCATCTAAATTTA
CCGTCAACTGCTCTAACTTGGGACGATTGGAAAGAGAAATTGTGTATTTT
TTAATACGTCGTTCATTAACTCAAATCAAATGACTTTGGAGGTTCAGTGA
AATGGTGGCTGAATTGCCGTTCCATATTTTGTCAGATAGTCCCAAGTTAG
AGCAGTTGACGATAGTTAGTTATACTGTATGCTGTAAAGAATGTATATGT
TAGAAAAACATGGAGTCACACTTCTGGCTACAGGAACTGAAAGCAAAGGC
CAATATTTTTAGTTTTTCTGAAGGACAAAAGGTATAGGAATTTAAAATCA
AAATTTCTAGCCGAAATATACTCTCAGAACACATCAGAGAAAAGAGTTGC
CTTGCCAGCTGCTTTTGATAGGTAATCTTTTCATATAGCCAAACAGAATT
ACCATTGCTTTTACCAAAAAAAATTATATTAGGTCCAATTTCAGTCATTT
TTAGCCAAATCGAACTTTTGTTTTTGCTGGTGCTTCGTGTAAACTTATCC
TGTCCGATGTGTAAACATTTGTGTGTGTTTCTGATGTGCTTGACTACTGG
TTGTCAAACCGGGATAAAACTAGGGTACTGCAATAAAAAGTTATGCCAGA
AAAACCATTTCCACCTCAAAAGGTGACTTCCTTTGCCAATAACTTTTGAT
ATAATTATTCCCCTAATTTCCCGTTTTCAGTAGGTCTTCCTCTATCTTAA
TGTACTTCGGAAAAACCAAAAACATTCCCCTAAAAGCTTAGCGTCACAAA
GCCCCAGCTTATAATATAATGGCACGGCCATTCTATGGAAATTGGATTAA
ACTCATAATCAAAGCATCAGACAAAGTGTGTTGTGGACTTGGGTAGCTTG
TCAACTGTTGTTTATTTATCAGGCAATAAATTACTTAAAAATCTAGCCTA
TATATTTTCTGAGAGCCAATCAGATTGCTTCTTTACCTTCTTCACCTTTA
AACCTAAAAAGTTCATTGCAGTCACCATGGCTTGAATCATAAATGTGTAG
AAAATTTTGAATGCTTAATTTAACTTTAGGTTTTGAGCGACCCTCTGCAA
TTCAACAAAGAGCCATCTTACCAGTTACAAAAGGAAGGGATGTTATTGCA
CAGTAAGTTACTCCTGATATTTTTTAAGAATACAACCAACCGCTTCCTAG
AATCTGGTCAGCTAATTCTTGAAGAATGTCTCTGATATTTTGAAATTTTA
TTCACCACATTAAAATTTCACTTTTACTATACTCACAGGTAAGGTTTGAA
ATATAGCGAGTTGTAATAATTTGTAATTATTCGTTATTTTATTTCAGGGC
CCAATCAGGAACTGGTAAAACTGCTACTTTTTCCATCTCAGCACTTCAAC
AGATTGACACAAGGGTAAGGCTTAGCTTACATTTACTCTCTCATTACTTA
AACTTAACAAGGACCAGCAAGGTTGTGTTGATAGAAGTGGCAGAAATATT
CACAGTATATTTTCTTCCTCTTTTTTTGCATGTCATCAACATTAAAGGAT
CATAGTTTCTAGAGGGGTCAAGACCCCCCCCTTAGGTATTAAAGAGGACC
CCCTTAAGTGTTAATTCATTTAAAATTTCACACCCCCTCCTTAGAAATCA
GTATAAATGAAACGATTGTACAAGAGTCATAATTAGGTTAGATGATTTTT
GTTATAGACTTCTATTGAAGAAGAATTGATTAACAATTTAATCACGTACA
CGCTGCTCACATCTTGTTGCCATTTTTATTTTGTGTTGTTTTTCTCTAGA
GACATTTTTACTCAAGAAGACCCCCCCCCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCCTAAATGTAAAAAATGGACAAAGACACAAAAGTCGAATGTCGATGAA
AGAAGAAAGTTTTTTTTGTTGGTTTGGTTAAAAAAAGACAAAAATACTGC
TTCTGTAATTTAAAAAAAAAAATACTTGTTTGAGGCGTTATTTTGGGAGT
GAACTTAACGAATTTAGGTTTTTCACATTTTCCATGATATCTTCAATTCT
GTCATTTATTTATACATTTTCCCTTTGCAGGTACGAGAAACGCAAGTACT
TATTCTGTCACCCACAAGAGAATTAGCGGGACAAATTCAAAAGGTATGTT
TGCCGTTTTCTTCATAAATTGTGTCTAGACTAGACACTTTTTATACTCAT
TCATAAATTTATTAATATTTAAAGAGGAGCANATTTTCTTCTTAAATTGT
GTCTAGACTAGACACTTTTTATACTGACAGTGCCAATTATTATTTGCAGT
ATACTAATTTTCATACTTTAAATCTAATACATGATTTGAGAAAGATCACA
AAAGAGGATCTCTTCAGAACTAAACTTATTGAACATTTTAAGAGAAATTA
ACTATTTTCTAGTAATACATATATATTCAAAATTGTGCTGTAAAAAGTTT
TAACTATATTTATTCAGAGAATTGGGATGGAATAGAAAAAGTGCTTCTCT
GTTTACCCGAAGTGTTCTGATCGTGCCTACTGAAAACTCCTTTGTGTTAG
CTTTAATTTGGTCGTTACAAAAAGTTAGAAAAAACGGCTCGCCATGCGAA
GAGGTCTGGTTTCTATATGCTGTGTTTATAAAAGTGGTTTTGTGTTTTTC
GTTTTTGATACATTACTTTTTAAACTTTCAGTATCCAGTATCAAATTTTA
CACTAATTTTCTAAGATTCTCATCACAATGATACCAAATTATTTCTAAAA
AAATTGATAGAAATTCATAAAGGCAGATTTGATTTTTTCTTTTCGTGAAC
TTTAGCTTTTAATCTAATTATGCGGTCATGATGTCGTTATATCATTAGAA
TCGCCGGAGCAATTCTGAGCAAGAAAATATAGGTATCTTTTGGTATAAAA
GAGGTCTCCCCAAAATATAAGCCCCTAAGTTTACGCATAATTTGTCCTGA
AACAAAAGAATTTCGTCATACCACGCTAATTATACAAATTTTTCAAAATA
GCAACAAAAGAATTCCATTAGCTCGAAACAAACTCCCTTAAGGGCAAAGG
ACCTGGTATATGACGAGCCGTTTGTCTATTGTTATGAAGAAGCTGTTTTC
CATCTCTTTACATTCCTCTGATTTATTTATTATTTCAGGGGGGGGTCGGT
AGTAAAATCTCAGACATATATGAGTAGTAAAAGGATTTTCACGAATTTTT
ACGTACCACCACCCAGACTCTTGGAAGAGGTATTTTACTACCCTGGTAGT
AGAAGTTTTTGGGACAATTTGTCATGGAGACCACCTATTTTTTGGTTGCT
TTTTGGACTGATTTTACACTAAAAAATGATTATTTCTGTGACACATTTTT
CACTTAGTGCAAAAATTAAAGTCTTTTATTTTGACAAAAAAAAATTTTTG
TTTGCAGCAAACAACTTTCCAACAGAAAATTTTTTCAAATTATAAAAATT
TTCAGATTCTTTCAGAAAAGTCATCCAAAAATTTAAAAGGATTACAAAAA
TAGCTAAAATTTGCTAATTTTACCAGTTTTAACTACCCAGGTAGTAAAAA
ATTTTCAACATTTAACACATAGATACCACCCATTTTAGTATTTAACTACC
CTGGGTAGTAAAAAAAAATTTCGATTTTTCGTTACACCACCACCGTAGTA
AACGTCATTATGTCTCAGATTTTACTACCGACCCCCCCCCCTGATTATTT
GTACTAGTAATCGTATGGTTTGGAGTGCAATTAACGATTAATCACGAGTA
ACAAAGGAGAAAATAGTAATTTGCACGAGTCCGAAGGACGAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAACATTACAGTGTAATT
TTTCTTTGTTTTCAATTAAAAGAAGCTATTGTAACGTAAAATGTGTTTGT
TCTTTTTTATATTGAAGAAAAAAATGTCTTTGTATTTTATTACATAGTAA
AAAAAAGTCTCTGACACAGGACTTGGGAGAGAAAAGAAAAGAGAACAAAA
GTGTCCCCCCGCCGAAGAGTGCAAAAAATGGTAATAGTGCAATTAACGAT
TAATTGCACTCCTCTAAACCAATCACATTCGAGTAATTTTGCACGGCTGA
CGATTAATAATCTTAATTTAACATTTTTGTTGTATATATTTCAAGATATT
TAAGATTTATTAAAGTTATTATTTTAATGTTCAAGCTCAATTTTGTCACT
TATCTCAGTCTAAGATTTTCAGTTTGAAAAACCACAATTTTCGTCAGATT
ACCTAACTTTAAACATACCTTAACTTCTCGACATCCTCTCAGGCTTTATT
TTATTTGTTTTTATAGTTCAAACATGTAATAAAGGTTTTTTTATGACTAT
TATTGTATTTTATATGTAGCGAGAATGGGCCTTCGGGCCTGATGTTAGAC
AAGTCCAGCTTGATATGTATTCTGATGATTGTAATCTAGATTAAAGTCCT
GGAATTCGGCTTAAGTATCCTGGAAAAAGGACTTAGTCGTGATACTGTAA
GTAAAGCACAAATAACACCTGGAAAATTCCGGACAGTTCTCTAAGGCTGT
TTTTGAAAAAATAATAACTGATGTGATTTCTTATAGGTTGTATTAGCGTT
AGGTGATTATATGAGTGTACAATGTCATGCATGTATTGGAGGTACAAATA
TTGGGGAAGATATTCGAAAATTGGATTATGGACAACACATCGTTTCAGGA
ACTCCTGGCAGAGTTTTTGGTAAGTCTTCTTGAGTGTTGTGATTCGTCAT
TTTCAAAGCCTCTTTTCTTTCCTTTTCATGACTAACCTCATCGACACATT
TAGCTGCATTTTCCCATGCTCCTGCAAAAATATAATACTTTATAATTATT
TATGTTGTTCACTTTAGATATGATCAAACGGCGCAACTTAAGAACGAGGT
CCATCAAGATGTTCATCCTTGACGAATCGGATGAAATGTTGAACAAAGGG
TTTAAAGAACAGATTTATGACGTTTATCGTTTTCTGCCACCAGCAACTCA
AGTAAGCAAATCGAAATCGTAAAGCTAAACAATGCCGTCTAAAGTTTGCC
TGATCTAAAGCAATCAGAATACTCCGAAATAGTTATAGGCTAAAAGTTGA
TTACTTAAATGTGTCCAGGGGAACGTAATAGTGATGTAGGAGGTGTACTG
GACTTTTAGAGGTCAACAGAGTCAATTTCCAAACGTATTTTGAAGTGAAG
CAGAGTGAAGACATAGAGAAATTTTATTTTTTATACTTTGTAGGTCGTTC
TGGTTAGCGCTACCTTACCACATGAAATTTTGGAAATGACACGAAAATTC
ATGACGGATCCAATTCGTATTTTGGTAAAACGGTAAGATGATAGAACATA
ACCTATTCGATTTTAGTGCTTTAAACAACTTTACTCCAGTATTCAACTCC
AAATTTTTGAACCTCTTATATGCAATATTGAAATGTCTATTTGATAATTT
TAAACCTTCACTTTTAGCTCTTTGAACTATTAAAGCACATGTTTTTATCA
TGAAAAGGGCTCTATCTTTGTACTGTGNAAGAACGAGGTCCATCAAGATG
TTCATCCTTGACGAATCGGATGAAATGTTGAACAAAGGGTTTAAAGAACA
GATTTATGACGTTTATCGTTTTCTGCCACCAGCAACTCAAGTAAGCAAAT
CGAAATCGTAAAGCTAAACAATGCCGTCTAAAGTTTGCCTGATCTAAAGC
AATCAGAATACTCCGAAATAGTTATAGGCTAAAAGTTGATTACTTAAATG
TGTCCAGGGGAACGTAATAGTGATGTAGGAGGTGTACTGGACTTTTAGAG
GTCAACAGAGTCAATTTCCAAACGTATTTTGAAGTGAAGCAGAGTGAAGA
CATAGAGAAATTTTATTTTTTATACTTTGTAGGTCGTTCTGGTTAGCGCT
ACCTTACCACATGAAATTTTGGAAATGACACGAAAATTCATGACGGATCC
AATTCGTATTTTGGTAAAACGGTAAGATGATAGAACACAACCTATTCTAT
TTCAGTGCTTTAAAAACTTTACTCCAGTATTCAACTCCAAATTTTTGAAC
CTCTTATATGCAATATTGAAATGTCTATTTGATAATTTTAAACCTTCACT
TTTAGCTCTTTGAACTATTAAAGCACATGTTTTTATCATGAAAAGGGCTC
TATCTTTGTACTGTGTATCTATGTGGCTTAGCTGTTGTTCGACATAACAT
GACTTCTAACAATCTGCACTTCTATCCTTCTTCCAGTGATGAATTGACGT
TAGAAGGAATCAAACAATTCTTCGTGGCAGTCGAGCGTGAAGAATGGAAA
TTCGAAACACTTTGCGATTTATACGATACACTCACAATCACGCAAGCTGT
CATATTCTGCAACACAAAACGTAAGGTGGACTGGTTAACAGAGAAAATGA
GAGAAGCGAACTTCACAGTAGTTTCAATGCACGGTGATATGCCACAAAAA
GAACGTGAATCCATCATGAAAGAATTCCGATCGGGTACCAGTCGGGTTTT
GATCTCAACCGATGTTTGGTCACGTGGTTTGGACGTTCCTCAAGTTTCAC
TCGTCATTAATTATGATTTGCCAAATAATCGTGAATTATACATCCACAGG
TACCAACATTTTTCTCTTCGATTCTCATTCAGTTTATTGAGGTAATCGAC
AAAAACCTTAATTGCAGGCCTCGTTTCCAAATTTCCAAACATTTACACCA
TTGATATGTACACCAAAATACCATCATCAATCCTGATATACAAAAACGCA
AAACGCTCACAACTATGTCTGGCATTGAAAAACAATACGGTGTTTGCAAA
GACTCTGTGAATTTGAGAAGTGTGTTTTTATATTGGGTACACATTGAATC
CTCGCCTTCGTTCATACTCAAGAGATTAATTCACTATTTCTATTCCTTAT
GTTTAGAATCGGTCGATCAGGTCGGTACGGACGTAAAGGTGTTGCCATCA
ACTTCGTGAAAGCAGACGATATTCGTGTATTGAGAGATATCGAACAATAT
TATTCCACACAAATCGATGAAATGCCAATGAACGGTAGGTTTTCTTTGAA
CAAAAGTAAAACAAATATGATTCGCTGCTGATAACTGCCGAAATACTTCT
TCTTTGAGTTTCGTGTTGGCAAATCTATTCTCCTTCGTCTCTATCCTTAT
TATAGTCCGTTCATTTTCTTTTTTTGGATAATCGTTACACGACTTCCAAT
CATCAGAAACAATGAAAATTGAGTGTTTGTAAAAAAGAAATTATTTAGGT
CATAGTGAGCGAACTAAATTATCAAAGGCCAGTAAATAGAAATTGGCTAC
AGTATGTATAGTTCTGAAAGTTTAAAAGCAAATTTTGGACCTAATCGCAC
GATGGGTTATTTTTTCTTATTTGGCAAGCCCTCAAAGAGAGCAATTAATC
GTTAATCACACTCTCCAATGCGGCGCCAATGTTTACAAAATTGATTTTAA
TGTTTTTTCTTACATTTTTTTTGCATCGAACGTTTTAATTGCATTCGAAA
TTTATTTTGTGAGAAAGAAAATCAATACACAACAATAAAAGAAAGACATA
AAGAGAAGAGAAAAATATAAAACTCTCAGTGTAATTTCTGAAATTTACTT
TCCTAACTGGGAAAAAGTAGGGAAAGCCATTGTGCGATTAGCTCGTAATC
ACATAATAACTCGTACAATTCGAAAATTGCACTCGTGATTTTTTTGTTTC
GAATTTTCCTCGTCCTTTCGGACTCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCGTCCTTTCGGACTCGGAAA
ATTAATAACAAAAAAATCACTCGTGCAATTATATTCGAATTGCACTCGTT
ATCATGTGATTACATATACTAATTTATTCATTTCCTTGTTTTAGTTGCTG
ATTTGATTTAAAACCAAAAATTTACCAAGCCGCCATGGAAGATTGACGGG
GAGATCTCAAGAACTTACTTATATTGTGTTTCACTCGTGATACTATCTAA
TTATTTTCATTGTACATACTTTTTTATGCCAAGCTTGAAAATTTTTCGAC
TTGGTTATTTTATAAGCCAAAATACAAATGTTGTTTTTATGGTAAATAAT
CTTTATCCTTCTCGCTGGTGCTAATTTAATGGGATAAATTTTCGCAGGGA
TTAAATTAAGTACCAATGGATGGAAAACCAAAAAAACACAACAATGTCAA
ATAAACTACTTTTAAGTAAATGTTAAATGTCATCAAAAAAGCGAAATAAT
GCGTATATCAACCAAAGTTAAAATCGCGATTATATTGTCTTCAAATAGTG
CCATCCGCGAAATTAAGTCGCGGGACTTAAATCTTAAAATTTCGCGGATA
AGCTCAACCGCGAAAGTTTATCTCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039443XLOC_039443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062973-exon-scaffold_375-1575043694:237331..238165TCONS_00062973-exon-scaffold_375-1575043694:237331..238165Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1575043694:231214..231286TCONS_00062973-exon-scaffold_375-1575043694:231214..231286Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1575043694:230952..231018TCONS_00062973-exon-scaffold_375-1575043694:230952..231018Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1575043694:230023..230085TCONS_00062973-exon-scaffold_375-1575043694:230023..230085Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1575043694:227247..227379TCONS_00062973-exon-scaffold_375-1575043694:227247..227379Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1575043694:226965..227098TCONS_00062973-exon-scaffold_375-1575043694:226965..227098Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1575043694:225995..226083TCONS_00062973-exon-scaffold_375-1575043694:225995..226083Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1575043694:225367..225729TCONS_00062973-exon-scaffold_375-1575043694:225367..225729Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1575043694:224932..225059TCONS_00062973-exon-scaffold_375-1575043694:224932..225059Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1575043694:223537..224021TCONS_00062973-exon-scaffold_375-1575043694:223537..224021Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:237331..238165TCONS_00062973-exon-scaffold_375-1510915933:237331..238165Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:231214..231286TCONS_00062973-exon-scaffold_375-1510915933:231214..231286Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:230952..231018TCONS_00062973-exon-scaffold_375-1510915933:230952..231018Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:230023..230085TCONS_00062973-exon-scaffold_375-1510915933:230023..230085Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:227247..227379TCONS_00062973-exon-scaffold_375-1510915933:227247..227379Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:226965..227098TCONS_00062973-exon-scaffold_375-1510915933:226965..227098Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:225995..226083TCONS_00062973-exon-scaffold_375-1510915933:225995..226083Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:225367..225729TCONS_00062973-exon-scaffold_375-1510915933:225367..225729Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:224932..225059TCONS_00062973-exon-scaffold_375-1510915933:224932..225059Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1510915933:223537..224021TCONS_00062973-exon-scaffold_375-1510915933:223537..224021Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:237331..238165TCONS_00062973-exon-scaffold_375-1491911889:237331..238165Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:231214..231286TCONS_00062973-exon-scaffold_375-1491911889:231214..231286Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:230952..231018TCONS_00062973-exon-scaffold_375-1491911889:230952..231018Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:230023..230085TCONS_00062973-exon-scaffold_375-1491911889:230023..230085Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:227247..227379TCONS_00062973-exon-scaffold_375-1491911889:227247..227379Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:226965..227098TCONS_00062973-exon-scaffold_375-1491911889:226965..227098Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:225995..226083TCONS_00062973-exon-scaffold_375-1491911889:225995..226083Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:225367..225729TCONS_00062973-exon-scaffold_375-1491911889:225367..225729Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:224932..225059TCONS_00062973-exon-scaffold_375-1491911889:224932..225059Clytia hemisphaericaexon
TCONS_00062973-exon-scaffold_375-1491911889:223537..224021TCONS_00062973-exon-scaffold_375-1491911889:223537..224021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:223537..238165 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.022	61.9414	144.73	156.881	171.146	136.027	75.0571	80.8606	53.839	53.0991	54.443	53.7929	55.8756	58.459	51.8606	53.5847	54.5128	56.1809	32.0797	33.0833	53.7515	53.5755	54.8333	54.2224	51.0041	56.3893	47.8675	57.0609	34.5677	36.7784
Blast
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BLAST of TCONS_00062973 vs. Swiss-Prot (Human)
Match: IF4A3 (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 727.243 bits (1876), Expect = 0.000e+0
Identity = 344/413 (83.29%), Postives = 383/413 (92.74%), Query Frame = 1 
Query:  661 LLSSSFFKMAEEVRRRVVETTDDEDSKLVFETSEDVKVTRTFDQMKLKEDLIRGIYAYGFERPSAIQQRAILPVTKGRDVIAQAQSGTGKTATFSISALQQIDTRVRETQVLILSPTRELAGQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVFDMIKRRNLRTRSIKMFILDESDEMLNKGFKEQIYDVYRFLPPATQVVLVSATLPHEILEMTRKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFETLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVVSMHGDMPQKERESIMKEFRSGTSRVLISTDVWSRGLDVPQVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKADDIRVLRDIEQYYSTQIDEMPMNVADLI 1899
            + +++    +   R+R+++  +++ +K+ FETSE+V VT TFD M L+EDL+RGIYAYGFE+PSAIQQRAI  + KGRDVIAQ+QSGTGKTATFSIS LQ +D +VRETQ LIL+PTRELA QIQK +LALGDYM+VQCHACIGGTN+GEDIRKLDYGQH+V+GTPGRVFDMI+RR+LRTR+IKM +LDE+DEMLNKGFKEQIYDVYR+LPPATQVVL+SATLPHEILEMT KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKF+TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTV SMHGDMPQKERESIMKEFRSG SRVLISTDVW+RGLDVPQVSL+INYDLPNNRELYIHRIGRSGRYGRKGVAINFVK DDIR+LRDIEQYYSTQIDEMPMNVADLI
Sbjct:    1 MATTATMATSGSARKRLLK--EEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
The following BLAST results are available for this feature:
BLAST of TCONS_00062973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF4A30.000e+083.29Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]
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