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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062977 ID=TCONS_00062977|Name=TCONS_00062977|organism=Clytia hemisphaerica|type=transcript|length=1640bpRun BLAST on NCBI protein sequence of TCONS_00062977-protein >TCONS_00062977-protein ID=TCONS_00062977-protein|Name=TCONS_00062977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp MGYEGDDDKYHRRKHTRWISGATCSKLFITSLFCFGVYLVISNSYGLYVRRun BLAST on NCBI transcript from alignment at scaffold_375:272549..290436- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062977 ID=TCONS_00062977|Name=TCONS_00062977|organism=Clytia hemisphaerica|type=transcript|length=17888bp|location=Sequence derived from alignment at scaffold_375:272549..290436- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_375:272549..290436- >TCONS_00062977 ID=TCONS_00062977|Name=TCONS_00062977|organism=Clytia hemisphaerica|type=CDS|length=22770bp|location=Sequence derived from alignment at scaffold_375:272549..290436- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062977 vs. Swiss-Prot (Human)
Match: TTLL5 (Tubulin polyglutamylase TTLL5 OS=Homo sapiens GN=TTLL5 PE=1 SV=3) HSP 1 Score: 102.064 bits (253), Expect = 1.925e-22 Identity = 90/323 (27.86%), Postives = 151/323 (46.75%), Query Frame = 2
Query: 275 KVIFHILTQAGYHCITSTKEPPQWDLLW--AHDFPFRKEFHSSLSNLQQNQKVNKLPGTSSITLKVELARTKLKW-----------IPTAFSIPAEETQFAHAATKNPDQLWVQK---SNNHRGIKIISAKDINTNAGSTFVQEFIERPLLIDKKKFDIGIYVVYTSVNPLQVYYFHDEALFRFCTEDY-------------YPLYAANTKKYVVGDDYIPLDQMPSLKKFYNHGQMSFKSSFFSYMLEKGFDPDSMWKEIRHCITELFKAKAEEMDEA---FSGHHFKQNFFELVRVDFVVDEKGKVWLMEVNMSPNLSPDA 1147
+++ ILT G+H + + ++L+W +H PF L L + QKVN P + +T K L + ++ +P F +PAE +F ++ +K+ W+ K S+ RG+ +I+ + + + V +I PLLID KFD+ +YV+ TS +PL V Y ++E L RF T Y Y+ N K DY+ D P ++ + N M S+ Y+ ++G D ++ + I + + + A F H + + FEL D ++D K WL+EVN+SP+L+ DA
Sbjct: 75 RLVRSILTAHGFHEVHPSST--DYNLMWTGSHLKPFL------LRTLSEAQKVNHFPRSYELTRKDRLYKNIIRMQHTHGFKAFHILPQTFLLPAEYAEFCNSYSKDRGP-WIVKPVASSRGRGVYLINNPNQISLEENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPL-VIYLYEEGLARFATVRYDQGAKNIRNQFMHLTNYSVNKK----SGDYVSCDD-PEVEDYGNKWSM---SAMLRYLKQEGRDTTALMAHVEDLIIKTIISAELAIATACKTFVPH--RSSCFELYGFDVLIDSTLKPWLLEVNLSPSLACDA 377 The following BLAST results are available for this feature:
BLAST of TCONS_00062977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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