TCONS_00062990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062990
Unique NameTCONS_00062990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062990 ID=TCONS_00062990|Name=TCONS_00062990|organism=Clytia hemisphaerica|type=transcript|length=320bp
GTTGTAGGATCACGTGTTTTAGACGTTGTCTTGTGctttaaacaatttaa
aaagggtTAAAACCATTTTGGCAGCTCGCCAATGTAGAAATTTAATCACA
ATTTTGATACTTAAAGACATTTTACTtccctttttaaaatttttacttcc
cttCTCGAAATATTTATTTcccttctttaaatttttacttctcttcttga
aactttcagaactttttttaGAAGTGGAGAAACCTCGGGGCCATCGTAAG
TTTCCCAAAGTTCTTCTTCTTCCAACTTTTCTTCGGCACGTGCCAAGCGT
GCTGCGTGCgtgaaaatttc
Run BLAST on NCBI

protein sequence of TCONS_00062990-protein

>TCONS_00062990-protein ID=TCONS_00062990-protein|Name=TCONS_00062990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
NFHARSTLGTCRRKVGRRRTLGNLRWPRGFSTSKKSSESFKKRSKNLKKG
NKYFEKGSKNFKKGSKMSLSIKIVIKFLHWRAAKMVLTLFKLFKAQDNV
Run BLAST on NCBI

transcript from alignment at scaffold_375:19614..19933

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062990 ID=TCONS_00062990|Name=TCONS_00062990|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at scaffold_375:19614..19933 (Clytia hemisphaerica)
gaaattttcacGCACGCAGCACGCTTGGCACGTGCCGAAGAAAAGTTGGA
AGAAGAAGAACTTTGGGAAACTTACGATGGCCCCGAGGTTTCTCCACTTC
taaaaaaagttctgaaagtttcaagaagagaagtaaaaatttaaagaagg
gAAATAAATATTTCGAGaagggaagtaaaaattttaaaaagggaAGTAAA
ATGTCTTTAAGTATCAAAATTGTGATTAAATTTCTACATTGGCGAGCTGC
CAAAATGGTTTTAaccctttttaaattgtttaaagCACAAGACAACGTCT
AAAACACGTGATCCTACAAC

Coding sequence (CDS) from alignment at scaffold_375:19614..19933

>TCONS_00062990 ID=TCONS_00062990|Name=TCONS_00062990|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_375:19614..19933 (Clytia hemisphaerica)
aattttcacGCACGCAGCACGCTTGGCACGTGCCGAAGAAAAGTTGGAAG
AAGAAGAACTTTGGGAAACTTACGATGGCCCCGAGGTTTCTCCACTTCta
aaaaaagttctgaaagtttcaagaagagaagtaaaaatttaaagaagggA
AATAAATATTTCGAGaagggaagtaaaaattttaaaaagggaAGTAAAAT
GTCTTTAAGTATCAAAATTGTGATTAAATTTCTACATTGGCGAGCTGCCA
AAATGGTTTTAaccctttttaaattgtttaaagCACAAGACAACGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039450XLOC_039450Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062990-proteinTCONS_00062990-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062990-exon-scaffold_375-1491911889:19614..19933TCONS_00062990-exon-scaffold_375-1491911889:19614..19933Clytia hemisphaericaexon
TCONS_00062990-exon-scaffold_375-1510915933:19614..19933TCONS_00062990-exon-scaffold_375-1510915933:19614..19933Clytia hemisphaericaexon
TCONS_00062990-exon-scaffold_375-1575043694:19614..19933TCONS_00062990-exon-scaffold_375-1575043694:19614..19933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:19614..19933 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.96896	4.92964	5.06583	7.36395	0.861944	0	0.821742	1.3923	3.37053	2.66861	1.94267	2.55406	2.47029	3.53165	2.72202	2.33692	6.47751	4.91795	1.35888	2.5284	14.3712	12.6109	17.3887	11.3108	0	0.612451	12.2698	4.12635	11.7054	9.30695
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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