TCONS_00063000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063000
Unique NameTCONS_00063000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063000 ID=TCONS_00063000|Name=TCONS_00063000|organism=Clytia hemisphaerica|type=transcript|length=526bp
CAATATTATGTTATTTTATTAGATCATTAGAATAATTCTTATTTACAATA
TATAATTTgtactttaaatatttttttttcatatttataaataaatctgt
aaaaaataatttctttaaaaaaactaaaatccaatttttttcatttttga
tcaaTATTTGTACTTCACATCTTCATCGTCAGCTTTTGACAATCACTCCG
CCCTTCTTTTTGCAATcactttcttttctttgataaattttacagacaCT
GTATCCTTTCTTGATTTTCCAACAAACTTTACAGTCTAATATTTCGTCCA
CGTAAATTCTGATGGAGCGTGCAAAACGCTTCCCAATAATTCCACTTTCG
CTTTCTTGCGTTCTCCTCAGCGGCACAGCATTTAGTTCTACTACAACCAT
AATAACcagcatcaaaataaagataagATTTCTCGTTGAAAGCATGTTCC
TTTCTTTTCTTCTGTTACAAGCAGTGCAATCAAGATTTCCAGAATAAATA
AATATCTTCCGTTCATTTCAAAATTG
Run BLAST on NCBI

transcript from alignment at scaffold_375:266103..266628

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063000 ID=TCONS_00063000|Name=TCONS_00063000|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at scaffold_375:266103..266628 (Clytia hemisphaerica)
CAATTTTGAAATGAACGGAAGATATTTATTTATTCTGGAAATCTTGATTG
CACTGCTTGTAACAGAAGAAAAGAAAGGAACATGCTTTCAACGAGAAATc
ttatctttattttgatgctgGTTATTATGGTTGTAGTAGAACTAAATGCT
GTGCCGCTGAGGAGAACGCAAGAAAGCGAAAGTGGAATTATTGGGAAGCG
TTTTGCACGCTCCATCAGAATTTACGTGGACGAAATATTAGACTGTAAAG
TTTGTTGGAAAATCAAGAAAGGATACAGtgtctgtaaaatttatcaaaga
aaagaaagtgATTGCAAAAAGAAGGGCGGAGTGATTGTCAAAAGCTGACG
ATGAAGATGTGAAGTACAAATAttgatcaaaaatgaaaaaaattggattt
tagtttttttaaagaaattattttttacagatttatttataaatatgaaa
aaaaaatatttaaagtacAAATTATATATTGTAAATAAGAATTATTCTAA
TGATCTAATAAAATAACATAATATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039460XLOC_039460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063000-exon-scaffold_375-1491911889:266103..266628TCONS_00063000-exon-scaffold_375-1491911889:266103..266628Clytia hemisphaericaexon
TCONS_00063000-exon-scaffold_375-1510915933:266103..266628TCONS_00063000-exon-scaffold_375-1510915933:266103..266628Clytia hemisphaericaexon
TCONS_00063000-exon-scaffold_375-1575043694:266103..266628TCONS_00063000-exon-scaffold_375-1575043694:266103..266628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:266103..266628 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.13368	1.20051	0.887028	0.619871	1.35834	0.715585	11.0793	13.6052	4.24397	5.49048	12.9261	4.47217	31.1873	16.3101	12.6465	7.8429	7.81347	43.6595	10.7073	5.60223	0	0.15834	3.46469	2.91658	0.120161	0	0.767303	0.491332	2.48439	3.164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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