TCONS_00063013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063013
Unique NameTCONS_00063013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063013 ID=TCONS_00063013|Name=TCONS_00063013|organism=Clytia hemisphaerica|type=transcript|length=576bp
ATTTAATTGTATGAAATGCATAAAGAATATGAAAATATAacactttaaaa
agtttattagattaaattctatataaaaatatcaattcagTAAATATTTA
AATCGTATGGAAAACAATCATGCCAAGGTATCGAGGTCTTTGACCCAAAA
AGTCCATTTACCATGCGGTAGTTTGGCATTAGTGTAAAGAGGTTCACCTT
TCCATGGCCAATCTTTTGCTTCAATGCTATACACCTCATCAAATGCATTG
AAAGTAGCTGCTTTCGATGTGAAAAAACTCGTCGCTTCAATCGTGGCATA
TTTGAAACCAGCTTTCTTGCATAGAGGGAGTACACCTTGAGTCAGGTAAT
TTGCGATTTTGTTTCCCCGATAATCAGGGTGGACTCCTAACAACCATAAA
TCAACTGCTTTTCCAGATTCACCAAGTTCAGGCATCCTTTTAGTAGCTTC
TCTATCCATATGCCATAAAAATTGCATCCATGGAGTCAAGGTTTTTGTAT
CAGAGCTGTACTTTGTGTCAAAACCTTCGGGGACCATAAGAAGATCACGA
ACGATGAATACACCTGCTACCCGAGG
Run BLAST on NCBI

protein sequence of TCONS_00063013-protein

>TCONS_00063013-protein ID=TCONS_00063013-protein|Name=TCONS_00063013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
PRVAGVFIVRDLLMVPEGFDTKYSSDTKTLTPWMQFLWHMDREATKRMPE
LGESGKAVDLWLLGVHPDYRGNKIANYLTQGVLPLCKKAGFKYATIEATS
FFTSKAATFNAFDEVYSIEAKDWPWKGEPLYTNAKLPHGKWTFWVKDLDT
LA
Run BLAST on NCBI

transcript from alignment at scaffold_375:391965..392540

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063013 ID=TCONS_00063013|Name=TCONS_00063013|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at scaffold_375:391965..392540 (Clytia hemisphaerica)
CCTCGGGTAGCAGGTGTATTCATCGTTCGTGATCTTCTTATGGTCCCCGA
AGGTTTTGACACAAAGTACAGCTCTGATACAAAAACCTTGACTCCATGGA
TGCAATTTTTATGGCATATGGATAGAGAAGCTACTAAAAGGATGCCTGAA
CTTGGTGAATCTGGAAAAGCAGTTGATTTATGGTTGTTAGGAGTCCACCC
TGATTATCGGGGAAACAAAATCGCAAATTACCTGACTCAAGGTGTACTCC
CTCTATGCAAGAAAGCTGGTTTCAAATATGCCACGATTGAAGCGACGAGT
TTTTTCACATCGAAAGCAGCTACTTTCAATGCATTTGATGAGGTGTATAG
CATTGAAGCAAAAGATTGGCCATGGAAAGGTGAACCTCTTTACACTAATG
CCAAACTACCGCATGGTAAATGGACTTTTTGGGTCAAAGACCTCGATACC
TTGGCATGATTGTTTTCCATACGATTTAAATATTTActgaattgatattt
ttatatagaatttaatctaataaactttttaaagtgtTATATTTTCATAT
TCTTTATGCATTTCATACAATTAAAT

Coding sequence (CDS) from alignment at scaffold_375:391965..392540

>TCONS_00063013 ID=TCONS_00063013|Name=TCONS_00063013|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_375:391965..392540 (Clytia hemisphaerica)
CCTCGGGTAGCAGGTGTATTCATCGTTCGTGATCTTCTTATGGTCCCCGA
AGGTTTTGACACAAAGTACAGCTCTGATACAAAAACCTTGACTCCATGGA
TGCAATTTTTATGGCATATGGATAGAGAAGCTACTAAAAGGATGCCTGAA
CTTGGTGAATCTGGAAAAGCAGTTGATTTATGGTTGTTAGGAGTCCACCC
TGATTATCGGGGAAACAAAATCGCAAATTACCTGACTCAAGGTGTACTCC
CTCTATGCAAGAAAGCTGGTTTCAAATATGCCACGATTGAAGCGACGAGT
TTTTTCACATCGAAAGCAGCTACTTTCAATGCATTTGATGAGGTGTATAG
CATTGAAGCAAAAGATTGGCCATGGAAAGGTGAACCTCTTTACACTAATG
CCAAACTACCGCATGGTAAATGGACTTTTTGGGTCAAAGACCTCGATACC
TTGGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039473XLOC_039473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063013-exon-scaffold_375-1491911889:391965..392540TCONS_00063013-exon-scaffold_375-1491911889:391965..392540Clytia hemisphaericaexon
TCONS_00063013-exon-scaffold_375-1510915933:391965..392540TCONS_00063013-exon-scaffold_375-1510915933:391965..392540Clytia hemisphaericaexon
TCONS_00063013-exon-scaffold_375-1575043694:391965..392540TCONS_00063013-exon-scaffold_375-1575043694:391965..392540Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063013-proteinTCONS_00063013-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:391965..392540 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.773357	0.0942681	0.656726	0.963755	0.260729	0.309047	0.124284	0.232706	0.0814616	0	0	0	0.385751	0.133536	0.0548922	0.176723	0.798265	2.90087	0.102762	0.322599	0.280397	0.136768	0.332518	1.10846	0	0	0.530213	0.282929	0.965661	0.655904
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top