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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063028 ID=TCONS_00063028|Name=TCONS_00063028|organism=Clytia hemisphaerica|type=transcript|length=1530bp
CCTACAATAAACGgattttaaaaatggtagactcccACAGTGcagtttca
ctttcactttcatttttcagtCATTCACTGCTTCTTTTTATATGGTTATA
TATATGCCATACTTGACGAGACGATGGAGACTGTGGTACAAGAAAGATTT
GCACAGACTATATCAACTGTTGATCTAGTAAAATATTATTCCAGTTTAAA
AACTCTCACAAACgatgaaatttgtaaactaATCAATGTTCaccatcaaa
aaaatttaacaccAAGACAGTTGAAATACATACGTCAACAAAATGGAATT
CGGAGGTATAACTATATATCAATGGAAGATTTGAGAAGTATCATCTTGAA
CGAGTTGCAAACGTCAAATTCCCGTGTTGGATATCGCCGAATGACTGAGT
TCATTAATTTGAAATACAATGTGTTAGTTCCAAAGGAAAAAGTCCGCCGC
TTACTGAGGATTTTGGATCCCGAAGGAGTCCAAGAAAGATCCAGAAATGT
GATTAGGAGAAGAATGTACCAAACTATAGGACCAAACGATATTTGGCATG
TGGACGGAAATGATAAATTGAAAAAGTGGGGATTTTGTACATGTAGCAGT
GGATGGGTTCAGCAGGAAGTTGCTATGGTTGAAAGTATCAACAACCAACA
ATGATCCTCTTGTTATTGCCAATTTTTATCTGGACTTtgttaacaataaa
aagattaCGCCAAAAGTGGTTCGGTTTGATAGAGGAACTGAAAACATATA
CATTCAAGATTTACAAGTATTTTTCACCAATGATATTATATAATAGTTTT
TTGTATGCAACCTCAACTCGAAATCAACGAATCGAATCTTTTTGGTCGCG
ATTAAAGAAATATCGACTTTGTTGGTGGATAGCTTTTTTTTGAGGAAATG
GAAAAAGAAAGCCTTTACAAATCATTCTTGGAAACTCATATTGAAACatt
attgtttgtttttattccaATAATACAGAGTGAATTAAATGAATTTGGAC
GTGTTTGGAATTCGAGAAATGTTCGACAATCTGCTGCAGCACCAGGTGGT
AAACCAGACATTTTGTATGTAATGCCTCAGGGGATTGGCTTTGAAAACCA
AGGATTTGTACCTTCAGACGACGATATTACCGTTGCAAGAGATGTGATTG
GAATAGACCACTGTCCggtttcaaaaaataaagatcttCATGACTTACTT
GAGTGTTATTGCCAAATAGGAAATATACTCTGACCATCTGATGCGTTTTC
AGGTTTAGATATTTATATTACATTATTAGAGCACTTTGGAAATAATGGTT
TTACTATTTGAATTCTCATTCAGTCATtaaatttgtttaaaagaaaagga
TTGTTTAGGGTCCTatccaaaacatttttttgtttataattatTTCATTA
TTCAATATATTCATGTCAAGAAGAAAGTATGCCAATCATGTTCAAAACAC
ATTCACTGACAAGTACTAGTGGGAGGATACCAggataacttcaaattttg
aagtttataacttttgatagagaaATATTC Run BLAST on NCBI protein sequence of TCONS_00063028-protein >TCONS_00063028-protein ID=TCONS_00063028-protein|Name=TCONS_00063028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
METVVQERFAQTISTVDLVKYYSSLKTLTNDEICKLINVHHQKNLTPRQL
KYIRQQNGIRRYNYISMEDLRSIILNELQTSNSRVGYRRMTEFINLKYNV
LVPKEKVRRLLRILDPEGVQERSRNVIRRRMYQTIGPNDIWHVDGNDKLK
KWGFCTCSSGWVQQEVAMVESINNQQ Run BLAST on NCBI transcript from alignment at scaffold_376:209..1738 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063028 ID=TCONS_00063028|Name=TCONS_00063028|organism=Clytia hemisphaerica|type=transcript|length=1530bp|location=Sequence derived from alignment at scaffold_376:209..1738 (Clytia hemisphaerica)
GAATATttctctatcaaaagttataaacttcaaaatttgaagttatccTG
GTATCCTCCCACTAGTACTTGTCAGTGAATGTGTTTTGAACATGATTGGC
ATACTTTCTTCTTGACATGAATATATTGAATAATGAAataattataaaca
aaaaaatgttttggatAGGACCCTAAACAAtccttttcttttaaacaaat
ttaATGACTGAATGAGAATTCAAATAGTAAAACCATTATTTCCAAAGTGC
TCTAATAATGTAATATAAATATCTAAACCTGAAAACGCATCAGATGGTCA
GAGTATATTTCCTATTTGGCAATAACACTCAAGTAAGTCATGaagatctt
tattttttgaaaccGGACAGTGGTCTATTCCAATCACATCTCTTGCAACG
GTAATATCGTCGTCTGAAGGTACAAATCCTTGGTTTTCAAAGCCAATCCC
CTGAGGCATTACATACAAAATGTCTGGTTTACCACCTGGTGCTGCAGCAG
ATTGTCGAACATTTCTCGAATTCCAAACACGTCCAAATTCATTTAATTCA
CTCTGTATTATtggaataaaaacaaacaataatGTTTCAATATGAGTTTC
CAAGAATGATTTGTAAAGGCTTTCTTTTTCCATTTCCTCAAAAAAAAGCT
ATCCACCAACAAAGTCGATATTTCTTTAATCGCGACCAAAAAGATTCGAT
TCGTTGATTTCGAGTTGAGGTTGCATACAAAAAACTATTATATAATATCA
TTGGTGAAAAATACTTGTAAATCTTGAATGTATATGTTTTCAGTTCCTCT
ATCAAACCGAACCACTTTTGGCGtaatctttttattgttaacaAAGTCCA
GATAAAAATTGGCAATAACAAGAGGATCATTGTTGGTTGTTGATACTTTC
AACCATAGCAACTTCCTGCTGAACCCATCCACTGCTACATGTACAAAATC
CCCACTTTTTCAATTTATCATTTCCGTCCACATGCCAAATATCGTTTGGT
CCTATAGTTTGGTACATTCTTCTCCTAATCACATTTCTGGATCTTTCTTG
GACTCCTTCGGGATCCAAAATCCTCAGTAAGCGGCGGACTTTTTCCTTTG
GAACTAACACATTGTATTTCAAATTAATGAACTCAGTCATTCGGCGATAT
CCAACACGGGAATTTGACGTTTGCAACTCGTTCAAGATGATACTTCTCAA
ATCTTCCATTGATATATAGTTATACCTCCGAATTCCATTTTGTTGACGTA
TGTATTTCAACTGTCTTggtgttaaatttttttgatggtGAACATTGATt
agtttacaaatttcatcGTTTGTGAGAGTTTTTAAACTGGAATAATATTT
TACTAGATCAACAGTTGATATAGTCTGTGCAAATCTTTCTTGTACCACAG
TCTCCATCGTCTCGTCAAGTATGGCATATATATAACCATATAAAAAGAAG
CAGTGAATGactgaaaaatgaaagtgaaagtgaaactgCACTGTgggagt
ctaccatttttaaaatcCGTTTATTGTAGG Coding sequence (CDS) from alignment at scaffold_376:209..1738 >TCONS_00063028 ID=TCONS_00063028|Name=TCONS_00063028|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_376:209..1738 (Clytia hemisphaerica)
TCATTGTTGGTTGTTGATACTTTCAACCATAGCAACTTCCTGCTGAACCC
ATCCACTGCTACATGTACAAAATCCCCACTTTTTCAATTTATCATTTCCG
TCCACATGCCAAATATCGTTTGGTCCTATAGTTTGGTACATTCTTCTCCT
AATCACATTTCTGGATCTTTCTTGGACTCCTTCGGGATCCAAAATCCTCA
GTAAGCGGCGGACTTTTTCCTTTGGAACTAACACATTGTATTTCAAATTA
ATGAACTCAGTCATTCGGCGATATCCAACACGGGAATTTGACGTTTGCAA
CTCGTTCAAGATGATACTTCTCAAATCTTCCATTGATATATAGTTATACC
TCCGAATTCCATTTTGTTGACGTATGTATTTCAACTGTCTTggtgttaaa
tttttttgatggtGAACATTGATtagtttacaaatttcatcGTTTGTGAG
AGTTTTTAAACTGGAATAATATTTTACTAGATCAACAGTTGATATAGTCT
GTGCAAATCTTTCTTGTACCACAGTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063028-exon-scaffold_376-1491911889:209..1738 | TCONS_00063028-exon-scaffold_376-1491911889:209..1738 | Clytia hemisphaerica | exon |
| TCONS_00063028-exon-scaffold_376-1510915933:209..1738 | TCONS_00063028-exon-scaffold_376-1510915933:209..1738 | Clytia hemisphaerica | exon |
| TCONS_00063028-exon-scaffold_376-1575043694:209..1738 | TCONS_00063028-exon-scaffold_376-1575043694:209..1738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_376 | supercontig | scaffold_376:209..1738 . |
Blast
The following BLAST results are available for this feature:
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