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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063032 ID=TCONS_00063032|Name=TCONS_00063032|organism=Clytia hemisphaerica|type=transcript|length=3133bpRun BLAST on NCBI protein sequence of TCONS_00063032-protein >TCONS_00063032-protein ID=TCONS_00063032-protein|Name=TCONS_00063032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=877bp MDLHCDEVLINKSKKVELETSLKNIKQEEIDDDCTIIPPPEIIPETQIKKRun BLAST on NCBI transcript from alignment at scaffold_376:123645..126777 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063032 ID=TCONS_00063032|Name=TCONS_00063032|organism=Clytia hemisphaerica|type=transcript|length=3133bp|location=Sequence derived from alignment at scaffold_376:123645..126777 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_376:123645..126777 >TCONS_00063032 ID=TCONS_00063032|Name=TCONS_00063032|organism=Clytia hemisphaerica|type=CDS|length=2634bp|location=Sequence derived from alignment at scaffold_376:123645..126777 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063032 vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.831e-47 Identity = 91/218 (41.74%), Postives = 129/218 (59.17%), Query Frame = 2
Query: 2087 FKCEHCDKCFTDYDYLKSHQKIHL--RIYKCDKCDRDFELEKSLKMHQNVH--DEVYKCNDCGKCFAQKGELLSHVRVHT--KPFVCGLCGERFTQNRDLKTHILWHNGKEVFKCNECEKCFTQKSSLRTHMNTHNGVKPFKCQACEKTFSLKGNLQKHLDLHRGLKPFQCPVCFKCFTQKHALQRHLTLHNFAQPFECVDCNKWFVRKDSYKQHLVA 2722
F+C C K F+ L++H++ H R YKCD+C + F+L+ L+ H H ++ YKCN CGK F QK +L H R+HT KP+ C CGE F+Q +L+ H H G++ ++C EC K F QKS+LR H TH G KP++C C K FS K L+KH H G KP+ C C + F+QK L+ H H +P++C C + F +K S ++H A
Sbjct: 478 FECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKA 695 HSP 2 Score: 160.999 bits (406), Expect = 9.075e-41 Identity = 82/215 (38.14%), Postives = 120/215 (55.81%), Query Frame = 2
Query: 2087 FKCEHCDKCFTDYDYLKSHQKIHL--RIYKCDKCDRDFELEKSLKMHQNVH--DEVYKCNDCGKCFAQKGELLSHVRVHT--KPFVCGLCGERFTQNRDLKTHILWHNGKEVFKCNECEKCFTQKSSLRTHMNTHNGVKPFKCQACEKTFSLKGNLQKHLDLHRGLKPFQCPVCFKCFTQKHALQRHLTLHNFAQPFECVDCNKWFVRKDSYKQH 2713
F+C C K F L HQ+ H + ++C++C + F L+ H+ H + YKC++CGK F K L H R HT KP+ C CG+ F Q L+ H H G++ +KCN C + F+QKS+LR H TH G KP++C+ C KTF K NL+ H H G KP++C C K F++K L++H H +P+ C C + F +K + + H
Sbjct: 450 FECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVH 664 HSP 3 Score: 144.821 bits (364), Expect = 1.624e-35 Identity = 75/187 (40.11%), Postives = 103/187 (55.08%), Query Frame = 2
Query: 2165 YKCDKCDRDFELEKSLKMHQNVH--DEVYKCNDCGKCFAQKGELLSHVRVHT--KPFVCGLCGERFTQNRDLKTHILWHNGKEVFKCNECEKCFTQKSSLRTHMNTHNGVKPFKCQACEKTFSLKGNLQKHLDLHRGLKPFQCPVCFKCFTQKHALQRHLTLHNFAQPFECVDCNKWFVRKDSYKQH 2713
Y+C +C + F + L+ HQ H ++ YKC+ C K F+ K L H R HT KPF C CG+ F L H H G++ F+CNEC K F+ S LR H TH G +P+KC C K F LK L+KH H G KP++C C K F QK L+ H +H +P++C C + F +K + + H
Sbjct: 394 YECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVH 580 HSP 4 Score: 133.265 bits (334), Expect = 9.337e-32 Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 2
Query: 2087 FKCEHCDKCFTDYDYLKSHQKIHL--RIYKCDKCDRDFELEKSLKMHQNVH--DEVYKCNDCGKCFAQKGELLSHVRVHT--KPFVCGLCGERFTQNRDLKTHILWHNGKEVFKCNECEKCFTQKSSLRTHMNTHNGVKPFKCQACEKTFSLKGNLQKHLDLHRG 2563
+KC C K F L+ H +IH + YKC+ C F + +L++H H ++ Y+C +CGK F QK L H R HT KP+ C CG+ F++ L+ H H G++ + CN+C + F+QKS+LR H TH G KP+KC C +TFS K +L++H H G
Sbjct: 534 YKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAHPG 698 HSP 5 Score: 119.783 bits (299), Expect = 1.529e-27 Identity = 70/210 (33.33%), Postives = 107/210 (50.95%), Query Frame = 2
Query: 2108 KCFTDYDYLKSHQKIHLRIYKCDKCDRDFELEKSLKMHQNVH--DEVYKCNDCGKCFAQKGELLSHVRVH--TKPFVCGLCGERFTQNRDLKTHILW----HNGKEVFKCNECEKCFTQKSSLRTHMNTHNGVKPFKCQACEKTFSLKGNLQKHLDLHRGLKPFQCPVCFKCFTQKHALQRHLTLHNFAQPFECVDCNKWFVRKDSYKQH 2713
K F+ +++ H ++H+ + K + + F +L +HQ H D+ + C + F+ + H +VH KP+ CG+ + N +H++W H G++ ++C EC K F++KS LR H TH G KP+KC C+K FS K L+ H H G KPF+C C K F K L H H +PFEC +C K F + H
Sbjct: 292 KSFSQKSHIREHHRVHIGV-KPFEYGKSFNRNSTLPVHQRTHATDKYSDYHPCTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMN----SHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNH 496 The following BLAST results are available for this feature:
BLAST of TCONS_00063032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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