TCONS_00063036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063036
Unique NameTCONS_00063036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2096

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063036 ID=TCONS_00063036|Name=TCONS_00063036|organism=Clytia hemisphaerica|type=transcript|length=2096bp
AAAATTGCGATTCCCCAATGTtggctatggCAACCGGGCAGGAATATTGT
ACCTGCATCTTTGAGTGCAACTGGAGCACAACTCCATGCGATGCCACATC
TTGTTACTAATTACATGACAGTACCATTGAGTCAAGCCAGGGGTCAACAC
ACCTTTCAAGCACACATTCCTGTAGGAATCAGAGCAGCTACAGCTATTGC
TCCCTCAAGAGCAAGTATTGCTACTCAAAGGTTGCAAACATTAAAACCAA
CTAATATCACAAACCAGATTCAACTACCATTGGCACCTCTTTCAAGTATT
CCGATATTGCCGCCATCAGTTGCAGCCAATAACCGTACAGGTTCTCCAAC
TGTGACCACCCATGGTATGACATCAGAATCTCGACATGGATCTAGGACAC
ATGATTCACACAGTGCTCTGCGTGGAAATATTCAAGCTACAAGCCAAACA
GCAACCATTCAAGTTGTTGCATCTGGAAATCAAGTTCATCTCCCAACATC
GCTTTTGACTACAAAAAGCTCATCTTTCAATACAGCAGTGCCTAATATGT
TGAAGATTGGTGTCAGCTCTCATACAAATGCAGCTTCTGTAACTCCCTTA
CCAGCATCTGGTTTCAAGCTTGCTGGGATTGGGAAAGCGTATCCTGGTGC
ATCCAGCGTTATCATACCGTCTGCAAAGCCTGAAGAACATCGTGTTTCAT
CGTTCAGTCGGTTCCCAAGTCCACATAGTGTCACAATACCTGCTCATCAG
ATACAAGGCTTGCCTGTGACTACAACCATTGCAAATAGCCAAAGTCTCAC
TGTAACTACTTCGACCGAAGCTAGGTCCCATTCAAGCATCAGTGTGCCTT
ATCAACAATTACCAACAGCCGCGGCTTATGTTTTTCATGATATTGGCTCA
CCACTTGGTCTTCACAATTTCTCCCATCAACTTGTACGGCCACAAAACAC
TTCATCAACAGCAACTGCATTACCCTTGTTTACTGTGGATTCTTCTCATG
CAATCTCTACTGTACCAGTCTCCGTTCCTGTCACTAAAGGACACTTGCTG
GCAACAACAGAAGCATCAGAAAATTCTAGAGTGGAGTCACTTACAATACA
TGCAAACAACTCTCTCAACTATCAAAACCTTTATCCCAATCTTTTAACTA
GCAATATTTCGACCACTTTTACAGTTGTCCCCACAACGTCTACAGAACCA
TCATCAAGGCCTAGTATCTTACGCAAACGACATGCTGAAACAACTACACC
ATTTCCTGTACAGCCTACTGAAAAGGAAAGAATATCGAGCCCCTTAAAAG
TTGACCGGCCAAGTGTTCCCACCAGACTAATGAGTCCACCTCAGTTAACA
AGTATTACAGCTGATGTTAAAAGCCCTCCACCTCCAAGTGTCACTTCAAT
ACCAACTGCAACGACAGCACCAATAGCTATGATTGAACAGCAACAGCAGA
AACTTCCTCCTGTTCTGACGTCAGCTAATACTGTTACAATGCCATCAAAG
ATTGCAATATCTATTCCACCTCTCGTCAATGCAGTACCTAACATCAATAA
TATTAATTCGATGAACTCCTCAATTCCAGAAGCATCACCTAAGAAAAAAC
CAAGAAAACAGCACATTATCACTACTGAAGATAAGTATGGTTCTGCACCC
ATCAATTCGGCCTGTGCAACTGACGAAGATGAGGAGTTTTTGAAATCCAA
TGAAACCATGACCTCGATGAAAGATATAACACCACCTAAACTCATACCAG
CATCCACCTCATCAAGTAGCGGTCCCTCTAATCCCAGTATAGCCAAACAG
TTGTATGCAGCTAGTCCTATCTTGAATACACATTTAAAACCAATGGAGAC
CAAGAAAGAGGTGAAGTTAGATTCAAAGCTGGAATTTAATGATAGATCAC
AGATCAATGGACTGATCACAGCAGCAGAATCTAAAGCAGGTATGATTCTA
AGTCAGATGAACATCATTGCTTGATTATGGAATATCATTATCAAGTATCA
AGTTTTTATAGCGGCAAAAATCTAGCTAATATTATTCTAAATTCCCTGCA
ACCTCTTGACCTCATATGACAGGTCAAAGTCAGTAGCTGTCACTAC
Run BLAST on NCBI

transcript from alignment at scaffold_377:25852..30937-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063036 ID=TCONS_00063036|Name=TCONS_00063036|organism=Clytia hemisphaerica|type=transcript|length=5086bp|location=Sequence derived from alignment at scaffold_377:25852..30937- (Clytia hemisphaerica)
AAAATTGCGATTCCCCAATGTTGGCTATGGGTAATTCCTTTCTTCTTTTG
CTATTTTCTTTTATTCTATGTGATGTAAAGACGATTCTTTCTTTTTTTAT
TTCTTCATGTTCGCCAATCTGAGGAGTACCATAGGAAAGCTCATGAAACC
TGCAAACTTAATTTTGAGTTTAGCCTTTTCCCAAGATTGGCAAACAATCC
ATGTTGACCACTTACAGCTTTTCTCTTTGATCTTTTGTTGGTTTCTTTTG
TTAATTTCTTGCATCATCAATGACTTCTTGAAATGGAAACACACAGTTTT
TACCAAGTTGCCTATATAGGACAGCACATTCTCAAATCCGATGCCCTGAA
TGACTGCCAGTGGAAAAAATTTCAATGATTACAAAATTCCCTCTCAAAAT
TTAATGATAAACTATGGTTTTGACCTTTCTATTGTTGATATCCAGGCATT
TATTCAGACCCTGGGCTAAAAATATTTTTCCTAAAATAGGGTTTGAGATG
AAAGAAAAATTAGCAGAAAATAGTGACATAACTCACCAAATTCTTTAATT
CTTTCTCTTAGCAACCGGGCAGGAATATTGTACCTGCATCTTTGAGTGCA
ACTGGAGCACAACTCCATGCGATGCCACATCTTGTTACTAATTACATGAC
AGTACCATTGAGTCAAGCCAGGGGTCAACACACCTTTCAAGCACACATTC
CTGTAGGAATCAGAGCAGCTACAGCTATTGCTCCCTCAAGAGCAAGTATT
GCTACTCAAAGGTTGCAAACATTAAAACCAACTAATATCACAAACCAGGT
GAGGCTTTTAAAGTATATCAATATAGACATATTGATTGTAAAGGCACAGT
TTTATTTTTTTCTTTTGTTTGCTTTAAAACAATTTCAAGTGAACAATATA
TAACCTTTAAAATAATCAAATTCTTACCTTAATAAGACTTTCCTACTGAA
TTGCTTATACTATCTTTTTCTAAATTTCAAAGACGATTTCAAACATATTT
TTATTCTTTTAATTCAGATTCAACTACCATTGGCACCTCTTTCAAGTATT
CCGATATTGCCGCCATCAGTTGCAGCCAATAACCGTACAGGTTCTCCAAC
TGTGACCACCCATGGTATGACATCAGAATCTCGACATGGATCTAGGACAC
ATGATTCACACAGTGCTCTGCGTGGAAATATTCAAGCTACAAGCCAAACA
GCAACCATTCAAGTTGTTGCATCTGGAAATCAAGTTCATCTCCCAACATC
GCTTTTGACTACAAAAAGCTCATCTTTCAATACAGCAGTGCCTAATATGT
TGAAGATTGGTGTCAGCTCTCATACAAATGCAGCTTCTGTAACTCCCTTA
CCAGCATCTGGTTTCAAGCTTGCTGGGATTGGTAGGAGTTTTTTCGTTCG
ACTTAAATTTGCTATTCTAAGACATGATGCACTTTTCAAACTATAAATGT
TTGATTATCTTGAGAGGAAACCAGCGCTATGGTTTGACTCACTAAAAACA
TACAACTAATCTTTAAGTGAGTTAACTAAAGTGCTCTGTTTTCACCTGAT
TCTAGAGTTATGGAATGGCAAAGGATAAAAAAATATGTAGATACCTTAAA
TCTCCTTATTTTAGGGAAAGCGTATCCTGGTGCATCCAGCGTTATCATAC
CGTCTGCAAAGCCTGAAGTAAGTTAAAATGTTTATTATCTTATTACATTA
ACCAGTGAATAATGTTATATGTAAATGTACGTTAATGTATAATGTTGAAT
AATGGAAGTATTTACAATTTTACTTCTTTAGGAACATCGTGTTTCATCGT
TCAGTCGGTTCCCAAGTCCACATAGTGTCACAATACCTGCTCATCAGATA
CAAGGCTTGCCTGTGACTACAACCATTGCAAATAGCCAAAGTCTCACTGT
AACTACTTCGACCGAAGCTAGGTAAGATAAAAAATTTTCTTTTTTAATTG
TAGCAATGGGTCATGAAATGAAATAGTGCATGACCACAGTACTCCCAGGG
GTTTTGAACTTGTACCTCCTAATAGCCCAAAATAAGATAATTACAAACTG
AAACCTACCTCTGTAATTAGAGCAAAATAAAGAACTGTGCTTTTAACAGC
TTAAATATTTTCAAAAATTAATATATGGGGGGTTTCCTATTCGGGTCCAT
GGTTGGAAAAAATTGAAAAATAAACAAGCAGCAGAGGGCTTTTATTATTA
GACATCTGCCAGCAGTTGTTTCAATAATCAAATTTGCTTAGAGGATTTGA
TAGGTTTAAGCCATGCTTTATATCAACTCCCCATATATACAAACCATGTT
AGACCATATCTGTATTTTTGCTAACAGGTCCCATTCAAGCATCAGTGTGC
CTTATCAACAATTACCAACAGCCGCGGCTTATGTTTTTCATGATATTGGT
AAGTGAAATTTAGCTATCTAAAAATTCTGTCCTGAAGCAAGCTGACTCTC
CAAAACTCTAACAACTTTCTTTCCTTGATTTTACAATAATGATTTTCTTT
TTTACATAATAGGCTCACCACTTGGTCTTCACAATTTCTCCCATCAACTT
GTACGGCCACAAAACACTTCATCAACAGCAACTGCATTACCCTTGTTTAC
TGTGGATTCTTCTCATGCAATCTCTACTGTACCAGTCTCCGTTCCTGTCA
CTAAAGGTTTGTTATGAAAAGTACTATCAACTCCTGCTAAGTATCTTTTT
CCTAACTTAATTCTTTCCCAATTATATTATTTCTATCATTCATTGCAATA
CAAATTTAAGCATATACCGGGTGCACCAAAAAAAAGTATACAACTTTGTC
GAGATATTGTGAGCTTCAGAATTTAAATTTTTTGTTCATTCTTTTTTTAT
TGTATAGAGGATACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGATACTTTAACTTGAA
TTTTGAGCTATCATACATTAAATTTGAAAAAGTAGTTCGAAAGTTATTTC
CAAAAAACTGACTTTTTTTCCATGTCGAAATTTGAAAAAATCATTAAAAA
CAGCAATCACGCTATAAATAAGACAAAATGACAAAAACACAATTTCATTG
TTTTTTTTATTCCTTTTTCTCTTATCTTATATTTTATATATTTTATGTAT
GACTGGTGGTGATTATTTCTCATTATCTTTCTTTTAGGACACTTGCTGGC
AACAACAGAAGCATCAGAAAATTCTAGAGTGGAGTCACTTACAATACATG
CAAACAACTCTCTCAACTATCAAAACCTTTATCCCAATCTTTTAACTAGC
AATATTTCGACCACTTTTACAGTTGTCCCCACAACGTCTACAGAACCATC
ATCAAGGCCTAGTATCTTACGCAAACGACATGCTGAAACAACTACACCGT
AAGACTTTAAGTATTTCAATTGGACGAGCGCTTTGATACATTTCTTATTT
CAAAGTTTTAATCTACTCTCAGATATCTAATCTGACATCTTTTATGGTGT
AAGTTTTTCAAAAATGCTTGGATAAAGAAACAAATGGAGGCCATATCAGT
CTAAAAAATCAGAATTTCCAAAAAACTTGCAAGGGACATTTATTAAGCAC
TTTTTGCTCTTGATATCTAACTGAAATAACATAATATTGTGTTTTAGATT
TCCTGTACAGCCTACTGAAAAGGAAAGAATATCGAGCCCCTTAAAAGTTG
ACCGGCCAAGTGTTCCCACCAGACTAATGAGTCCACCTCAGTTAACAAGG
TAAATATTTTTCACAGACTTATAAAAGCCAATAGCTGTTAAAAAAATGCA
AAATACAACTGTTGCTGAAAACTCTTAAAACCCATAAAAAATTGAAAGAA
TTTTATCAAAATGTTGGCGTACCCCATAAAATAAGATCCACCAAGAGCAA
CACAGATCACCTATTCTATACCCTTGCACATCTATAATAAATTGAATGTT
TTCTTCCAATAGTTAGTTTTCTTAAGGTACTTAAGATTTTTTATGATGTA
ATAATTACATAACTGTTTCAGTGAAAAGCCTGATGTAATGAAGCCAATCA
ACCACTCTATTCAAAGTATTACAGCTGATGTTAAAAGCCCTCCACCTCCA
AGTGTCACTTCAATACCAACTGCAACGACAGCACCAATAGCTATGATTGA
ACAGCAACAGCAGAAACTTCCTCCTGTTCTGACGTCAGCTAATACTGTTA
CAATGCCATCAAAGATTGCAATATCTATTCCACCTCTCGTCAATGCAGTA
CCTAACATCAATAATATTAATTCGATGAACTCCTCAATTCCAGAAGCATC
ACCTAAGAAAAAACCAAGAAAACAGCACATGTAAGGAAACTCCCTGTCAA
ATTTTAGGTTTTGCTAAAAAACAGAGTATTGTTCCAATTTATTTATCTTT
TCCTTTCCTGGTATAATACTCTCAACATTTGGGAACGATCTTTTGATAAG
CTACAAAAATAAGATATTTTCAAAGTAGAATACTATCTATGATATTAAAT
TATCAGTCAGATAACTGCTCAAGATTTTAAAATTATGATTCTGTTTACAC
TTACAGTATCACTACTGAAGATAAGTATGGTTCTGCACCCATCAATTCGG
CCTGTGCAACTGACGAAGATGAGGAGTTTTTGAAATCCAATGAAACCATG
ACCTCGATGAAAGATATAACACCACCTAAACTCATACCAGCATCCACCTC
ATCAAGTAGCGGTCCCTCTAATCCCAGTATAGCCAAACAGTTGTATGCAG
CTAGTCCTATCTTGAATACACATTTAAAACCAATGGAGACCAAGAAAGAG
GTGAAGTTAGATTCAAAGCTGGAATTTAATGATAGATCACAGATCAATGG
ACTGATCACAGCAGCAGAATCTAAAGCAGGTATGATTCTAAGTCAGATGA
ACATCATTGCTTGATTATGGAATATCATTATCAAGTATCAAGTTTTTATA
GCGGCAAAAATCTAGCTAATATTATTCTAAATTCCCTGCAACCTCTTGAC
CTCATATGACAGGTCAAAGTCAGTAGCTGTCACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039489XLOC_039489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063036-exon-scaffold_377-1575043694:30908..30937TCONS_00063036-exon-scaffold_377-1575043694:30908..30937Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:30140..30376TCONS_00063036-exon-scaffold_377-1575043694:30140..30376Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:29557..29920TCONS_00063036-exon-scaffold_377-1575043694:29557..29920Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:29271..29323TCONS_00063036-exon-scaffold_377-1575043694:29271..29323Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:29017..29156TCONS_00063036-exon-scaffold_377-1575043694:29017..29156Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:28540..28610TCONS_00063036-exon-scaffold_377-1575043694:28540..28610Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:28282..28425TCONS_00063036-exon-scaffold_377-1575043694:28282..28425Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:27490..27700TCONS_00063036-exon-scaffold_377-1575043694:27490..27700Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:27139..27240TCONS_00063036-exon-scaffold_377-1575043694:27139..27240Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:26558..26821TCONS_00063036-exon-scaffold_377-1575043694:26558..26821Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1575043694:25852..26331TCONS_00063036-exon-scaffold_377-1575043694:25852..26331Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:30908..30937TCONS_00063036-exon-scaffold_377-1510915933:30908..30937Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:30140..30376TCONS_00063036-exon-scaffold_377-1510915933:30140..30376Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:29557..29920TCONS_00063036-exon-scaffold_377-1510915933:29557..29920Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:29271..29323TCONS_00063036-exon-scaffold_377-1510915933:29271..29323Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:29017..29156TCONS_00063036-exon-scaffold_377-1510915933:29017..29156Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:28540..28610TCONS_00063036-exon-scaffold_377-1510915933:28540..28610Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:28282..28425TCONS_00063036-exon-scaffold_377-1510915933:28282..28425Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:27490..27700TCONS_00063036-exon-scaffold_377-1510915933:27490..27700Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:27139..27240TCONS_00063036-exon-scaffold_377-1510915933:27139..27240Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:26558..26821TCONS_00063036-exon-scaffold_377-1510915933:26558..26821Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1510915933:25852..26331TCONS_00063036-exon-scaffold_377-1510915933:25852..26331Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:30908..30937TCONS_00063036-exon-scaffold_377-1491911889:30908..30937Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:30140..30376TCONS_00063036-exon-scaffold_377-1491911889:30140..30376Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:29557..29920TCONS_00063036-exon-scaffold_377-1491911889:29557..29920Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:29271..29323TCONS_00063036-exon-scaffold_377-1491911889:29271..29323Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:29017..29156TCONS_00063036-exon-scaffold_377-1491911889:29017..29156Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:28540..28610TCONS_00063036-exon-scaffold_377-1491911889:28540..28610Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:28282..28425TCONS_00063036-exon-scaffold_377-1491911889:28282..28425Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:27490..27700TCONS_00063036-exon-scaffold_377-1491911889:27490..27700Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:27139..27240TCONS_00063036-exon-scaffold_377-1491911889:27139..27240Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:26558..26821TCONS_00063036-exon-scaffold_377-1491911889:26558..26821Clytia hemisphaericaexon
TCONS_00063036-exon-scaffold_377-1491911889:25852..26331TCONS_00063036-exon-scaffold_377-1491911889:25852..26331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_377supercontigscaffold_377:25852..30937 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.23621e-05	4.64743e-08	0	0	0	0	0	0	2.88945	5.12516	0.0536012	0.000357367	0.0228802	0.0879055	0.000936169	1.33311	2.84275e-09	0.0775554	3.94182e-09	2.61058e-06	4.14387e-07	0	4.98498e-10	1.83415	0	0	0.567646	8.08862e-06	2.01125	0.0279691
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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