TCONS_00063038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063038
Unique NameTCONS_00063038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063038 ID=TCONS_00063038|Name=TCONS_00063038|organism=Clytia hemisphaerica|type=transcript|length=2122bp
ATGGCTTTTCGCAACCGGGCAGGAATATTGTACCTGCATCTTTGAGTGCA
ACTGGAGCACAACTCCATGCGATGCCACATCTTGTTACTAATTACATGAC
AGTACCATTGAGTCAAGCCAGGGGTCAACACACCTTTCAAGCACACATTC
CTGTAGGAATCAGAGCAGCTACAGCTATTGCTCCCTCAAGAGCAAGTATT
GCTACTCAAAGGTTGCAAACATTAAAACCAACTAATATCACAAACCAGAT
TCAACTACCATTGGCACCTCTTTCAAGTATTCCGATATTGCCGCCATCAG
TTGCAGCCAATAACCGTACAGGTTCTCCAACTGTGACCACCCATGGTATG
ACATCAGAATCTCGACATGGATCTAGGACACATGATTCACACAGTGCTCT
GCGTGGAAATATTCAAGCTACAAGCCAAACAGCAACCATTCAAGTTGTTG
CATCTGGAAATCAAGTTCATCTCCCAACATCGCTTTTGACTACAAAAAGC
TCATCTTTCAATACAGCAGTGCCTAATATGTTGAAGATTGGTGTCAGCTC
TCATACAAATGCAGCTTCTGTAACTCCCTTACCAGCATCTGGTTTCAAGC
TTGCTGGGATTGGGAAAGCGTATCCTGGTGCATCCAGCGTTATCATACCG
TCTGCAAAGCCTGAAGAACATCGTGTTTCATCGTTCAGTCGGTTCCCAAG
TCCACATAGTGTCACAATACCTGCTCATCAGATACAAGGCTTGCCTGTGA
CTACAACCATTGCAAATAGCCAAAGTCTCACTGTAACTACTTCGACCGAA
GCTAGGTCCCATTCAAGCATCAGTGTGCCTTATCAACAATTACCAACAGC
CGCGGCTTATGTTTTTCATGATATTGGCTCACCACTTGGTCTTCACAATT
TCTCCCATCAACTTGTACGGCCACAAAACACTTCATCAACAGCAACTGCA
TTACCCTTGTTTACTGTGGATTCTTCTCATGCAATCTCTACTGTACCAGT
CTCCGTTCCTGTCACTAAAGGACACTTGCTGGCAACAACAGAAGCATCAG
AAAATTCTAGAGTGGAGTCACTTACAATACATGCAAACAACTCTCTCAAC
TATCAAAACCTTTATCCCAATCTTTTAACTAGCAATATTTCGACCACTTT
TACAGTTGTCCCCACAACGTCTACAGAACCATCATCAAGGCCTAGTATCT
TACGCAAACGACATGCTGAAACAACTACACCATTTCCTGTACAGCCTACT
GAAAAGGAAAGAATATCGAGCCCCTTAAAAGTTGACCGGCCAAGTGTTCC
CACCAGACTAATGAGTCCACCTCAGTTAACAAGTGAAAAGCCTGATGTAA
TGAAGCCAATCAACCACTCTATTCAAAGTATTACAGCTGATGTTAAAAGC
CCTCCACCTCCAAGTGTCACTTCAATACCAACTGCAACGACAGCACCAAT
AGCTATGATTGAACAGCAACAGCAGAAACTTCCTCCTGTTCTGACGTCAG
CTAATACTGTTACAATGCCATCAAAGATTGCAATATCTATTCCACCTCTC
GTCAATGCAGTACCTAACATCAATAATATTAATTCGATGAACTCCTCAAT
TCCAGAAGCATCACCTAAGAAAAAACCAAGAAAACAGCACATTATCACTA
CTGAAGATAAGTATGGTTCTGCACCCATCAATTCGGCCTGTGCAACTGAC
GAAGATGAGGAGTTTTTGAAATCCAATGAAACCATGACCTCGATGAAAGA
TATAACACCACCTAAACTCATACCAGCATCCACCTCATCAAGTAGCGGTC
CCTCTAATCCCAGTATAGCCAAACAGTTGTATGCAGCTAGTCCTATCTTG
AATACACATTTAAAACCAATGGAGACCAAGAAAGAGGTGAAGTTAGATTC
AAAGCTGGAATTTAATGATAGATCACAGATCAATGGACTGATCACAGCAG
CAGAATCTAAAGCAGGTATGATTCTAAGTCAGATGAACATCATTGCTTGA
TTATGGAATATCATTATCAAGTATCAAGTTTTTATAGCGGCAAAAATCTA
GCTAATATTATTCTAAATTCCCTGCAACCTCTTGACCTCATATGACAGGT
CAAAGTCAGTAGCTGTCACTAC
Run BLAST on NCBI

transcript from alignment at scaffold_377:25852..31339-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063038 ID=TCONS_00063038|Name=TCONS_00063038|organism=Clytia hemisphaerica|type=transcript|length=5488bp|location=Sequence derived from alignment at scaffold_377:25852..31339- (Clytia hemisphaerica)
ATGGCTTTTCGGTACGGTGCCTTGGATTATGAGCGGTCTTATAACTTTAT
TTGTTTCAACTGTTGATTCAGTCAGTGGAAGTAACTGGATTTTAAGCATG
TTCAAAGTTCACNTATTTGTTTCAACTGTTGATTCAGTCAGTGGAAGTAA
CTTGATTTTAAGCATGTTCAAAGTTCACAGTAACAAGTTTCTTTTTATTA
CGGAAACCAAATGAGTGAGAACAAGTCATAAAACTTAAAGTCAGCGCTTC
GTGGTCCATGGTTGTGACATAGTTCACAAAATTGTTAATGAGATAAAATG
ACAAAACGAAAGCTTCTTCATTTTTTATTTTTGCATTTAATGAGGAAGAA
TGAAATTTTCAAAAGATGCTTCATTTGATATAATGAGGATTCCCATTTCC
ATAAAATTGCGATTCCCCAATGTTGGCTATGGGTAATTCCTTTCTTCTTT
TGCTATTTTCTTTTATTCTATGTGATGTAAAGACGATTCTTTCTTTTTTT
ATTTCTTCATGTTCGCCAATCTGAGGAGTACCATAGGAAAGCTCATGAAA
CCTGCAAACTTAATTTTGAGTTTAGCCTTTTCCCAAGATTGGCAAACAAT
CCATGTTGACCACTTACAGCTTTTCTCTTTGATCTTTTGTTGGTTTCTTT
TGTTAATTTCTTGCATCATCAATGACTTCTTGAAATGGAAACACACAGTT
TTTACCAAGTTGCCTATATAGGACAGCACATTCTCAAATCCGATGCCCTG
AATGACTGCCAGTGGAAAAAATTTCAATGATTACAAAATTCCCTCTCAAA
ATTTAATGATAAACTATGGTTTTGACCTTTCTATTGTTGATATCCAGGCA
TTTATTCAGACCCTGGGCTAAAAATATTTTTCCTAAAATAGGGTTTGAGA
TGAAAGAAAAATTAGCAGAAAATAGTGACATAACTCACCAAATTCTTTAA
TTCTTTCTCTTAGCAACCGGGCAGGAATATTGTACCTGCATCTTTGAGTG
CAACTGGAGCACAACTCCATGCGATGCCACATCTTGTTACTAATTACATG
ACAGTACCATTGAGTCAAGCCAGGGGTCAACACACCTTTCAAGCACACAT
TCCTGTAGGAATCAGAGCAGCTACAGCTATTGCTCCCTCAAGAGCAAGTA
TTGCTACTCAAAGGTTGCAAACATTAAAACCAACTAATATCACAAACCAG
GTGAGGCTTTTAAAGTATATCAATATAGACATATTGATTGTAAAGGCACA
GTTTTATTTTTTTCTTTTGTTTGCTTTAAAACAATTTCAAGTGAACAATA
TATAACCTTTAAAATAATCAAATTCTTACCTTAATAAGACTTTCCTACTG
AATTGCTTATACTATCTTTTTCTAAATTTCAAAGACGATTTCAAACATAT
TTTTATTCTTTTAATTCAGATTCAACTACCATTGGCACCTCTTTCAAGTA
TTCCGATATTGCCGCCATCAGTTGCAGCCAATAACCGTACAGGTTCTCCA
ACTGTGACCACCCATGGTATGACATCAGAATCTCGACATGGATCTAGGAC
ACATGATTCACACAGTGCTCTGCGTGGAAATATTCAAGCTACAAGCCAAA
CAGCAACCATTCAAGTTGTTGCATCTGGAAATCAAGTTCATCTCCCAACA
TCGCTTTTGACTACAAAAAGCTCATCTTTCAATACAGCAGTGCCTAATAT
GTTGAAGATTGGTGTCAGCTCTCATACAAATGCAGCTTCTGTAACTCCCT
TACCAGCATCTGGTTTCAAGCTTGCTGGGATTGGTAGGAGTTTTTTCGTT
CGACTTAAATTTGCTATTCTAAGACATGATGCACTTTTCAAACTATAAAT
GTTTGATTATCTTGAGAGGAAACCAGCGCTATGGTTTGACTCACTAAAAA
CATACAACTAATCTTTAAGTGAGTTAACTAAAGTGCTCTGTTTTCACCTG
ATTCTAGAGTTATGGAATGGCAAAGGATAAAAAAATATGTAGATACCTTA
AATCTCCTTATTTTAGGGAAAGCGTATCCTGGTGCATCCAGCGTTATCAT
ACCGTCTGCAAAGCCTGAAGTAAGTTAAAATGTTTATTATCTTATTACAT
TAACCAGTGAATAATGTTATATGTAAATGTACGTTAATGTATAATGTTGA
ATAATGGAAGTATTTACAATTTTACTTCTTTAGGAACATCGTGTTTCATC
GTTCAGTCGGTTCCCAAGTCCACATAGTGTCACAATACCTGCTCATCAGA
TACAAGGCTTGCCTGTGACTACAACCATTGCAAATAGCCAAAGTCTCACT
GTAACTACTTCGACCGAAGCTAGGTAAGATAAAAAATTTTCTTTTTTAAT
TGTAGCAATGGGTCATGAAATGAAATAGTGCATGACCACAGTACTCCCAG
GGGTTTTGAACTTGTACCTCCTAATAGCCCAAAATAAGATAATTACAAAC
TGAAACCTACCTCTGTAATTAGAGCAAAATAAAGAACTGTGCTTTTAACA
GCTTAAATATTTTCAAAAATTAATATATGGGGGGTTTCCTATTCGGGTCC
ATGGTTGGAAAAAATTGAAAAATAAACAAGCAGCAGAGGGCTTTTATTAT
TAGACATCTGCCAGCAGTTGTTTCAATAATCAAATTTGCTTAGAGGATTT
GATAGGTTTAAGCCATGCTTTATATCAACTCCCCATATATACAAACCATG
TTAGACCATATCTGTATTTTTGCTAACAGGTCCCATTCAAGCATCAGTGT
GCCTTATCAACAATTACCAACAGCCGCGGCTTATGTTTTTCATGATATTG
GTAAGTGAAATTTAGCTATCTAAAAATTCTGTCCTGAAGCAAGCTGACTC
TCCAAAACTCTAACAACTTTCTTTCCTTGATTTTACAATAATGATTTTCT
TTTTTACATAATAGGCTCACCACTTGGTCTTCACAATTTCTCCCATCAAC
TTGTACGGCCACAAAACACTTCATCAACAGCAACTGCATTACCCTTGTTT
ACTGTGGATTCTTCTCATGCAATCTCTACTGTACCAGTCTCCGTTCCTGT
CACTAAAGGTTTGTTATGAAAAGTACTATCAACTCCTGCTAAGTATCTTT
TTCCTAACTTAATTCTTTCCCAATTATATTATTTCTATCATTCATTGCAA
TACAAATTTAAGCATATACCGGGTGCACCAAAAAAAAGTATACAACTTTG
TCGAGATATTGTGAGCTTCAGAATTTAAATTTTTTGTTCATTCTTTTTTT
ATTGTATAGAGGATACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGATACTTTAACTTG
AATTTTGAGCTATCATACATTAAATTTGAAAAAGTAGTTCGAAAGTTATT
TCCAAAAAACTGACTTTTTTTCCATGTCGAAATTTGAAAAAATCATTAAA
AACAGCAATCACGCTATAAATAAGACAAAATGACAAAAACACAATTTCAT
TGTTTTTTTTATTCCTTTTTCTCTTATCTTATATTTTATATATTTTATGT
ATGACTGGTGGTGATTATTTCTCATTATCTTTCTTTTAGGACACTTGCTG
GCAACAACAGAAGCATCAGAAAATTCTAGAGTGGAGTCACTTACAATACA
TGCAAACAACTCTCTCAACTATCAAAACCTTTATCCCAATCTTTTAACTA
GCAATATTTCGACCACTTTTACAGTTGTCCCCACAACGTCTACAGAACCA
TCATCAAGGCCTAGTATCTTACGCAAACGACATGCTGAAACAACTACACC
GTAAGACTTTAAGTATTTCAATTGGACGAGCGCTTTGATACATTTCTTAT
TTCAAAGTTTTAATCTACTCTCAGATATCTAATCTGACATCTTTTATGGT
GTAAGTTTTTCAAAAATGCTTGGATAAAGAAACAAATGGAGGCCATATCA
GTCTAAAAAATCAGAATTTCCAAAAAACTTGCAAGGGACATTTATTAAGC
ACTTTTTGCTCTTGATATCTAACTGAAATAACATAATATTGTGTTTTAGA
TTTCCTGTACAGCCTACTGAAAAGGAAAGAATATCGAGCCCCTTAAAAGT
TGACCGGCCAAGTGTTCCCACCAGACTAATGAGTCCACCTCAGTTAACAA
GGTAAATATTTTTCACAGACTTATAAAAGCCAATAGCTGTTAAAAAAATG
CAAAATACAACTGTTGCTGAAAACTCTTAAAACCCATAAAAAATTGAAAG
AATTTTATCAAAATGTTGGCGTACCCCATAAAATAAGATCCACCAAGAGC
AACACAGATCACCTATTCTATACCCTTGCACATCTATAATAAATTGAATG
TTTTCTTCCAATAGTTAGTTTTCTTAAGGTACTTAAGATTTTTTATGATG
TAATAATTACATAACTGTTTCAGTGAAAAGCCTGATGTAATGAAGCCAAT
CAACCACTCTATTCAAAGTATTACAGCTGATGTTAAAAGCCCTCCACCTC
CAAGTGTCACTTCAATACCAACTGCAACGACAGCACCAATAGCTATGATT
GAACAGCAACAGCAGAAACTTCCTCCTGTTCTGACGTCAGCTAATACTGT
TACAATGCCATCAAAGATTGCAATATCTATTCCACCTCTCGTCAATGCAG
TACCTAACATCAATAATATTAATTCGATGAACTCCTCAATTCCAGAAGCA
TCACCTAAGAAAAAACCAAGAAAACAGCACATGTAAGGAAACTCCCTGTC
AAATTTTAGGTTTTGCTAAAAAACAGAGTATTGTTCCAATTTATTTATCT
TTTCCTTTCCTGGTATAATACTCTCAACATTTGGGAACGATCTTTTGATA
AGCTACAAAAATAAGATATTTTCAAAGTAGAATACTATCTATGATATTAA
ATTATCAGTCAGATAACTGCTCAAGATTTTAAAATTATGATTCTGTTTAC
ACTTACAGTATCACTACTGAAGATAAGTATGGTTCTGCACCCATCAATTC
GGCCTGTGCAACTGACGAAGATGAGGAGTTTTTGAAATCCAATGAAACCA
TGACCTCGATGAAAGATATAACACCACCTAAACTCATACCAGCATCCACC
TCATCAAGTAGCGGTCCCTCTAATCCCAGTATAGCCAAACAGTTGTATGC
AGCTAGTCCTATCTTGAATACACATTTAAAACCAATGGAGACCAAGAAAG
AGGTGAAGTTAGATTCAAAGCTGGAATTTAATGATAGATCACAGATCAAT
GGACTGATCACAGCAGCAGAATCTAAAGCAGGTATGATTCTAAGTCAGAT
GAACATCATTGCTTGATTATGGAATATCATTATCAAGTATCAAGTTTTTA
TAGCGGCAAAAATCTAGCTAATATTATTCTAAATTCCCTGCAACCTCTTG
ACCTCATATGACAGGTCAAAGTCAGTAGCTGTCACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039489XLOC_039489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063038-exon-scaffold_377-1575043694:31329..31339TCONS_00063038-exon-scaffold_377-1575043694:31329..31339Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:30140..30376TCONS_00063038-exon-scaffold_377-1575043694:30140..30376Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:29557..29920TCONS_00063038-exon-scaffold_377-1575043694:29557..29920Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:29271..29323TCONS_00063038-exon-scaffold_377-1575043694:29271..29323Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:29017..29156TCONS_00063038-exon-scaffold_377-1575043694:29017..29156Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:28540..28610TCONS_00063038-exon-scaffold_377-1575043694:28540..28610Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:28282..28425TCONS_00063038-exon-scaffold_377-1575043694:28282..28425Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:27490..27700TCONS_00063038-exon-scaffold_377-1575043694:27490..27700Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:27139..27240TCONS_00063038-exon-scaffold_377-1575043694:27139..27240Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:26558..26866TCONS_00063038-exon-scaffold_377-1575043694:26558..26866Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1575043694:25852..26331TCONS_00063038-exon-scaffold_377-1575043694:25852..26331Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:31329..31339TCONS_00063038-exon-scaffold_377-1510915933:31329..31339Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:30140..30376TCONS_00063038-exon-scaffold_377-1510915933:30140..30376Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:29557..29920TCONS_00063038-exon-scaffold_377-1510915933:29557..29920Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:29271..29323TCONS_00063038-exon-scaffold_377-1510915933:29271..29323Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:29017..29156TCONS_00063038-exon-scaffold_377-1510915933:29017..29156Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:28540..28610TCONS_00063038-exon-scaffold_377-1510915933:28540..28610Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:28282..28425TCONS_00063038-exon-scaffold_377-1510915933:28282..28425Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:27490..27700TCONS_00063038-exon-scaffold_377-1510915933:27490..27700Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:27139..27240TCONS_00063038-exon-scaffold_377-1510915933:27139..27240Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:26558..26866TCONS_00063038-exon-scaffold_377-1510915933:26558..26866Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1510915933:25852..26331TCONS_00063038-exon-scaffold_377-1510915933:25852..26331Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:31329..31339TCONS_00063038-exon-scaffold_377-1491911889:31329..31339Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:30140..30376TCONS_00063038-exon-scaffold_377-1491911889:30140..30376Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:29557..29920TCONS_00063038-exon-scaffold_377-1491911889:29557..29920Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:29271..29323TCONS_00063038-exon-scaffold_377-1491911889:29271..29323Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:29017..29156TCONS_00063038-exon-scaffold_377-1491911889:29017..29156Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:28540..28610TCONS_00063038-exon-scaffold_377-1491911889:28540..28610Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:28282..28425TCONS_00063038-exon-scaffold_377-1491911889:28282..28425Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:27490..27700TCONS_00063038-exon-scaffold_377-1491911889:27490..27700Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:27139..27240TCONS_00063038-exon-scaffold_377-1491911889:27139..27240Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:26558..26866TCONS_00063038-exon-scaffold_377-1491911889:26558..26866Clytia hemisphaericaexon
TCONS_00063038-exon-scaffold_377-1491911889:25852..26331TCONS_00063038-exon-scaffold_377-1491911889:25852..26331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_377supercontigscaffold_377:25852..31339 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.4171	15.4306	8.99245	4.30051	27.7277	21.8679	18.0197	18.3625	12.1405	18.0703	19.4671	13.3125	12.9836	13.9503	13.0221	13.9781	21.8668	20.5312	11.5953	9.25061	14.1811	12.7679	25.211	25.0285	21.099	18.3919	1.98541	8.19275	21.8038	28.9346
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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