TCONS_00063039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063039
Unique NameTCONS_00063039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063039 ID=TCONS_00063039|Name=TCONS_00063039|organism=Clytia hemisphaerica|type=transcript|length=2210bp
aaatctgcaatAAAAACAAGAGTGGTCTGTTATTAGTGGAAGAAGTCACT
CCATcggaaattcttttttaaatttcaaccaatgaaattgctGCATATGA
TGAAGTAACGACTGGCCCTATTTTTTGGCGCTAATGGCTTTTCGCAACCG
GGCAGGAATATTGTACCTGCATCTTTGAGTGCAACTGGAGCACAACTCCA
TGCGATGCCACATCTTGTTACTAATTACATGACAGTACCATTGAGTCAAG
CCAGGGGTCAACACACCTTTCAAGCACACATTCCTGTAGGAATCAGAGCA
GCTACAGCTATTGCTCCCTCAAGAGCAAGTATTGCTACTCAAAGGTTGCA
AACATTAAAACCAACTAATATCACAAACCAGATTCAACTACCATTGGCAC
CTCTTTCAAGTATTCCGATATTGCCGCCATCAGTTGCAGCCAATAACCGT
ACAGGTTCTCCAACTGTGACCACCCATGGTATGACATCAGAATCTCGACA
TGGATCTAGGACACATGATTCACACAGTGCTCTGCGTGGAAATATTCAAG
CTACAAGCCAAACAGCAACCATTCAAGTTGTTGCATCTGGAAATCAAGTT
CATCTCCCAACATCGCTTTTGACTACAAAAAGCTCATCTTTCAATACAGC
AGTGCCTAATATGTTGAAGATTGGTGTCAGCTCTCATACAAATGCAGCTT
CTGTAACTCCCTTACCAGCATCTGGTTTCAAGCTTGCTGGGATTGGGAAA
GCGTATCCTGGTGCATCCAGCGTTATCATACCGTCTGCAAAGCCTGAAGA
ACATCGTGTTTCATCGTTCAGTCGGTTCCCAAGTCCACATAGTGTCACAA
TACCTGCTCATCAGATACAAGGCTTGCCTGTGACTACAACCATTGCAAAT
AGCCAAAGTCTCACTGTAACTACTTCGACCGAAGCTAGGTCCCATTCAAG
CATCAGTGTGCCTTATCAACAATTACCAACAGCCGCGGCTTATGTTTTTC
ATGATATTGGCTCACCACTTGGTCTTCACAATTTCTCCCATCAACTTGTA
CGGCCACAAAACACTTCATCAACAGCAACTGCATTACCCTTGTTTACTGT
GGATTCTTCTCATGCAATCTCTACTGTACCAGTCTCCGTTCCTGTCACTA
AAGGACACTTGCTGGCAACAACAGAAGCATCAGAAAATTCTAGAGTGGAG
TCACTTACAATACATGCAAACAACTCTCTCAACTATCAAAACCTTTATCC
CAATCTTTTAACTAGCAATATTTCGACCACTTTTACAGTTGTCCCCACAA
CGTCTACAGAACCATCATCAAGGCCTAGTATCTTACGCAAACGACATGCT
GAAACAACTACACCATTTCCTGTACAGCCTACTGAAAAGGAAAGAATATC
GAGCCCCTTAAAAGTTGACCGGCCAAGTGTTCCCACCAGACTAATGAGTC
CACCTCAGTTAACAAGTATTACAGCTGATGTTAAAAGCCCTCCACCTCCA
AGTGTCACTTCAATACCAACTGCAACGACAGCACCAATAGCTATGATTGA
ACAGCAACAGCAGAAACTTCCTCCTGTTCTGACGTCAGCTAATACTGTTA
CAATGCCATCAAAGATTGCAATATCTATTCCACCTCTCGTCAATGCAGTA
CCTAACATCAATAATATTAATTCGATGAACTCCTCAATTCCAGAAGCATC
ACCTAAGAAAAAACCAAGAAAACAGCACATTATCACTACTGAAGATAAGT
ATGGTTCTGCACCCATCAATTCGGCCTGTGCAACTGACGAAGATGAGGAG
TTTTTGAAATCCAATGAAACCATGACCTCGATGAAAGATATAACACCACC
TAAACTCATACCAGCATCCACCTCATCAAGTAGCGGTCCCTCTAATCCCA
GTATAGCCAAACAGTTGTATGCAGCTAGTCCTATCTTGAATACACATTTA
AAACCAATGGAGACCAAGAAAGAGGTGAAGTTAGATTCAAAGCTGGAATT
TAATGATAGATCACAGATCAATGGACTGATCACAGCAGCAGAATCTAAAG
CAGGTATGATTCTAAGTCAGATGAACATCATTGCTTGATTATGGAATATC
ATTATCAAGTATCAAGTTTTTATAGCGGCAAAAATCTAGCTAATATTATT
CTAAATTCCCTGCAACCTCTTGACCTCATATGACAGGTCAAAGTCAGTAG
CTGTCACTAC
Run BLAST on NCBI

transcript from alignment at scaffold_377:25852..31472-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063039 ID=TCONS_00063039|Name=TCONS_00063039|organism=Clytia hemisphaerica|type=transcript|length=5621bp|location=Sequence derived from alignment at scaffold_377:25852..31472- (Clytia hemisphaerica)
AAATCTGCAATAAAAACAAGAGTGGTCTGTTATTAGTGGAAGAAGTCACT CCATCGGAAATTCTTTTTTAAATTTCAACCAATGAAATTGCTGCATATGA TGAAGTAACGACTGGCCCTATTTTTTGGCGCTAATGGCTTTTCGGTACGG TGCCTTGGATTATGAGCGGTCTTATAACTTTATTTGTTTCAACTGTTGAT TCAGTCAGTGGAAGTAACTGGATTTTAAGCATGTTCAAAGTTCACNTATT TGTTTCAACTGTTGATTCAGTCAGTGGAAGTAACTTGATTTTAAGCATGT TCAAAGTTCACAGTAACAAGTTTCTTTTTATTACGGAAACCAAATGAGTG AGAACAAGTCATAAAACTTAAAGTCAGCGCTTCGTGGTCCATGGTTGTGA CATAGTTCACAAAATTGTTAATGAGATAAAATGACAAAACGAAAGCTTCT TCATTTTTTATTTTTGCATTTAATGAGGAAGAATGAAATTTTCAAAAGAT GCTTCATTTGATATAATGAGGATTCCCATTTCCATAAAATTGCGATTCCC CAATGTTGGCTATGGGTAATTCCTTTCTTCTTTTGCTATTTTCTTTTATT CTATGTGATGTAAAGACGATTCTTTCTTTTTTTATTTCTTCATGTTCGCC AATCTGAGGAGTACCATAGGAAAGCTCATGAAACCTGCAAACTTAATTTT GAGTTTAGCCTTTTCCCAAGATTGGCAAACAATCCATGTTGACCACTTAC AGCTTTTCTCTTTGATCTTTTGTTGGTTTCTTTTGTTAATTTCTTGCATC ATCAATGACTTCTTGAAATGGAAACACACAGTTTTTACCAAGTTGCCTAT ATAGGACAGCACATTCTCAAATCCGATGCCCTGAATGACTGCCAGTGGAA AAAATTTCAATGATTACAAAATTCCCTCTCAAAATTTAATGATAAACTAT GGTTTTGACCTTTCTATTGTTGATATCCAGGCATTTATTCAGACCCTGGG CTAAAAATATTTTTCCTAAAATAGGGTTTGAGATGAAAGAAAAATTAGCA GAAAATAGTGACATAACTCACCAAATTCTTTAATTCTTTCTCTTAGCAAC CGGGCAGGAATATTGTACCTGCATCTTTGAGTGCAACTGGAGCACAACTC CATGCGATGCCACATCTTGTTACTAATTACATGACAGTACCATTGAGTCA AGCCAGGGGTCAACACACCTTTCAAGCACACATTCCTGTAGGAATCAGAG CAGCTACAGCTATTGCTCCCTCAAGAGCAAGTATTGCTACTCAAAGGTTG CAAACATTAAAACCAACTAATATCACAAACCAGGTGAGGCTTTTAAAGTA TATCAATATAGACATATTGATTGTAAAGGCACAGTTTTATTTTTTTCTTT TGTTTGCTTTAAAACAATTTCAAGTGAACAATATATAACCTTTAAAATAA TCAAATTCTTACCTTAATAAGACTTTCCTACTGAATTGCTTATACTATCT TTTTCTAAATTTCAAAGACGATTTCAAACATATTTTTATTCTTTTAATTC AGATTCAACTACCATTGGCACCTCTTTCAAGTATTCCGATATTGCCGCCA TCAGTTGCAGCCAATAACCGTACAGGTTCTCCAACTGTGACCACCCATGG TATGACATCAGAATCTCGACATGGATCTAGGACACATGATTCACACAGTG CTCTGCGTGGAAATATTCAAGCTACAAGCCAAACAGCAACCATTCAAGTT GTTGCATCTGGAAATCAAGTTCATCTCCCAACATCGCTTTTGACTACAAA AAGCTCATCTTTCAATACAGCAGTGCCTAATATGTTGAAGATTGGTGTCA GCTCTCATACAAATGCAGCTTCTGTAACTCCCTTACCAGCATCTGGTTTC AAGCTTGCTGGGATTGGTAGGAGTTTTTTCGTTCGACTTAAATTTGCTAT TCTAAGACATGATGCACTTTTCAAACTATAAATGTTTGATTATCTTGAGA GGAAACCAGCGCTATGGTTTGACTCACTAAAAACATACAACTAATCTTTA AGTGAGTTAACTAAAGTGCTCTGTTTTCACCTGATTCTAGAGTTATGGAA TGGCAAAGGATAAAAAAATATGTAGATACCTTAAATCTCCTTATTTTAGG GAAAGCGTATCCTGGTGCATCCAGCGTTATCATACCGTCTGCAAAGCCTG AAGTAAGTTAAAATGTTTATTATCTTATTACATTAACCAGTGAATAATGT TATATGTAAATGTACGTTAATGTATAATGTTGAATAATGGAAGTATTTAC AATTTTACTTCTTTAGGAACATCGTGTTTCATCGTTCAGTCGGTTCCCAA GTCCACATAGTGTCACAATACCTGCTCATCAGATACAAGGCTTGCCTGTG ACTACAACCATTGCAAATAGCCAAAGTCTCACTGTAACTACTTCGACCGA AGCTAGGTAAGATAAAAAATTTTCTTTTTTAATTGTAGCAATGGGTCATG AAATGAAATAGTGCATGACCACAGTACTCCCAGGGGTTTTGAACTTGTAC CTCCTAATAGCCCAAAATAAGATAATTACAAACTGAAACCTACCTCTGTA ATTAGAGCAAAATAAAGAACTGTGCTTTTAACAGCTTAAATATTTTCAAA AATTAATATATGGGGGGTTTCCTATTCGGGTCCATGGTTGGAAAAAATTG AAAAATAAACAAGCAGCAGAGGGCTTTTATTATTAGACATCTGCCAGCAG TTGTTTCAATAATCAAATTTGCTTAGAGGATTTGATAGGTTTAAGCCATG CTTTATATCAACTCCCCATATATACAAACCATGTTAGACCATATCTGTAT TTTTGCTAACAGGTCCCATTCAAGCATCAGTGTGCCTTATCAACAATTAC CAACAGCCGCGGCTTATGTTTTTCATGATATTGGTAAGTGAAATTTAGCT ATCTAAAAATTCTGTCCTGAAGCAAGCTGACTCTCCAAAACTCTAACAAC TTTCTTTCCTTGATTTTACAATAATGATTTTCTTTTTTACATAATAGGCT CACCACTTGGTCTTCACAATTTCTCCCATCAACTTGTACGGCCACAAAAC ACTTCATCAACAGCAACTGCATTACCCTTGTTTACTGTGGATTCTTCTCA TGCAATCTCTACTGTACCAGTCTCCGTTCCTGTCACTAAAGGTTTGTTAT GAAAAGTACTATCAACTCCTGCTAAGTATCTTTTTCCTAACTTAATTCTT TCCCAATTATATTATTTCTATCATTCATTGCAATACAAATTTAAGCATAT ACCGGGTGCACCAAAAAAAAGTATACAACTTTGTCGAGATATTGTGAGCT TCAGAATTTAAATTTTTTGTTCATTCTTTTTTTATTGTATAGAGGATACT TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNGAGGATACTTTAACTTGAATTTTGAGCTATCATA CATTAAATTTGAAAAAGTAGTTCGAAAGTTATTTCCAAAAAACTGACTTT TTTTCCATGTCGAAATTTGAAAAAATCATTAAAAACAGCAATCACGCTAT AAATAAGACAAAATGACAAAAACACAATTTCATTGTTTTTTTTATTCCTT TTTCTCTTATCTTATATTTTATATATTTTATGTATGACTGGTGGTGATTA TTTCTCATTATCTTTCTTTTAGGACACTTGCTGGCAACAACAGAAGCATC AGAAAATTCTAGAGTGGAGTCACTTACAATACATGCAAACAACTCTCTCA ACTATCAAAACCTTTATCCCAATCTTTTAACTAGCAATATTTCGACCACT TTTACAGTTGTCCCCACAACGTCTACAGAACCATCATCAAGGCCTAGTAT CTTACGCAAACGACATGCTGAAACAACTACACCGTAAGACTTTAAGTATT TCAATTGGACGAGCGCTTTGATACATTTCTTATTTCAAAGTTTTAATCTA CTCTCAGATATCTAATCTGACATCTTTTATGGTGTAAGTTTTTCAAAAAT GCTTGGATAAAGAAACAAATGGAGGCCATATCAGTCTAAAAAATCAGAAT TTCCAAAAAACTTGCAAGGGACATTTATTAAGCACTTTTTGCTCTTGATA TCTAACTGAAATAACATAATATTGTGTTTTAGATTTCCTGTACAGCCTAC TGAAAAGGAAAGAATATCGAGCCCCTTAAAAGTTGACCGGCCAAGTGTTC CCACCAGACTAATGAGTCCACCTCAGTTAACAAGGTAAATATTTTTCACA GACTTATAAAAGCCAATAGCTGTTAAAAAAATGCAAAATACAACTGTTGC TGAAAACTCTTAAAACCCATAAAAAATTGAAAGAATTTTATCAAAATGTT GGCGTACCCCATAAAATAAGATCCACCAAGAGCAACACAGATCACCTATT CTATACCCTTGCACATCTATAATAAATTGAATGTTTTCTTCCAATAGTTA GTTTTCTTAAGGTACTTAAGATTTTTTATGATGTAATAATTACATAACTG TTTCAGTGAAAAGCCTGATGTAATGAAGCCAATCAACCACTCTATTCAAA GTATTACAGCTGATGTTAAAAGCCCTCCACCTCCAAGTGTCACTTCAATA CCAACTGCAACGACAGCACCAATAGCTATGATTGAACAGCAACAGCAGAA ACTTCCTCCTGTTCTGACGTCAGCTAATACTGTTACAATGCCATCAAAGA TTGCAATATCTATTCCACCTCTCGTCAATGCAGTACCTAACATCAATAAT ATTAATTCGATGAACTCCTCAATTCCAGAAGCATCACCTAAGAAAAAACC AAGAAAACAGCACATGTAAGGAAACTCCCTGTCAAATTTTAGGTTTTGCT AAAAAACAGAGTATTGTTCCAATTTATTTATCTTTTCCTTTCCTGGTATA ATACTCTCAACATTTGGGAACGATCTTTTGATAAGCTACAAAAATAAGAT ATTTTCAAAGTAGAATACTATCTATGATATTAAATTATCAGTCAGATAAC TGCTCAAGATTTTAAAATTATGATTCTGTTTACACTTACAGTATCACTAC TGAAGATAAGTATGGTTCTGCACCCATCAATTCGGCCTGTGCAACTGACG AAGATGAGGAGTTTTTGAAATCCAATGAAACCATGACCTCGATGAAAGAT ATAACACCACCTAAACTCATACCAGCATCCACCTCATCAAGTAGCGGTCC CTCTAATCCCAGTATAGCCAAACAGTTGTATGCAGCTAGTCCTATCTTGA ATACACATTTAAAACCAATGGAGACCAAGAAAGAGGTGAAGTTAGATTCA AAGCTGGAATTTAATGATAGATCACAGATCAATGGACTGATCACAGCAGC AGAATCTAAAGCAGGTATGATTCTAAGTCAGATGAACATCATTGCTTGAT TATGGAATATCATTATCAAGTATCAAGTTTTTATAGCGGCAAAAATCTAG CTAATATTATTCTAAATTCCCTGCAACCTCTTGACCTCATATGACAGGTC AAAGTCAGTAGCTGTCACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039489XLOC_039489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063039-exon-scaffold_377-1575043694:31329..31472TCONS_00063039-exon-scaffold_377-1575043694:31329..31472Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:30140..30376TCONS_00063039-exon-scaffold_377-1575043694:30140..30376Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:29557..29920TCONS_00063039-exon-scaffold_377-1575043694:29557..29920Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:29271..29323TCONS_00063039-exon-scaffold_377-1575043694:29271..29323Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:29017..29156TCONS_00063039-exon-scaffold_377-1575043694:29017..29156Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:28540..28610TCONS_00063039-exon-scaffold_377-1575043694:28540..28610Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:28282..28425TCONS_00063039-exon-scaffold_377-1575043694:28282..28425Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:27490..27700TCONS_00063039-exon-scaffold_377-1575043694:27490..27700Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:27139..27240TCONS_00063039-exon-scaffold_377-1575043694:27139..27240Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:26558..26821TCONS_00063039-exon-scaffold_377-1575043694:26558..26821Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1575043694:25852..26331TCONS_00063039-exon-scaffold_377-1575043694:25852..26331Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:31329..31472TCONS_00063039-exon-scaffold_377-1510915933:31329..31472Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:30140..30376TCONS_00063039-exon-scaffold_377-1510915933:30140..30376Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:29557..29920TCONS_00063039-exon-scaffold_377-1510915933:29557..29920Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:29271..29323TCONS_00063039-exon-scaffold_377-1510915933:29271..29323Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:29017..29156TCONS_00063039-exon-scaffold_377-1510915933:29017..29156Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:28540..28610TCONS_00063039-exon-scaffold_377-1510915933:28540..28610Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:28282..28425TCONS_00063039-exon-scaffold_377-1510915933:28282..28425Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:27490..27700TCONS_00063039-exon-scaffold_377-1510915933:27490..27700Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:27139..27240TCONS_00063039-exon-scaffold_377-1510915933:27139..27240Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:26558..26821TCONS_00063039-exon-scaffold_377-1510915933:26558..26821Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1510915933:25852..26331TCONS_00063039-exon-scaffold_377-1510915933:25852..26331Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:31329..31472TCONS_00063039-exon-scaffold_377-1491911889:31329..31472Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:30140..30376TCONS_00063039-exon-scaffold_377-1491911889:30140..30376Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:29557..29920TCONS_00063039-exon-scaffold_377-1491911889:29557..29920Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:29271..29323TCONS_00063039-exon-scaffold_377-1491911889:29271..29323Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:29017..29156TCONS_00063039-exon-scaffold_377-1491911889:29017..29156Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:28540..28610TCONS_00063039-exon-scaffold_377-1491911889:28540..28610Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:28282..28425TCONS_00063039-exon-scaffold_377-1491911889:28282..28425Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:27490..27700TCONS_00063039-exon-scaffold_377-1491911889:27490..27700Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:27139..27240TCONS_00063039-exon-scaffold_377-1491911889:27139..27240Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:26558..26821TCONS_00063039-exon-scaffold_377-1491911889:26558..26821Clytia hemisphaericaexon
TCONS_00063039-exon-scaffold_377-1491911889:25852..26331TCONS_00063039-exon-scaffold_377-1491911889:25852..26331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_377supercontigscaffold_377:25852..31472 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06998 3.21492 0.939177 1.91179 18.3036 12.84 8.09708 10.2674 0.00755081 0.00454863 1.03462 1.23346 1.66331 2.25261 1.49365 3.81029 2.49022 3.89116 0.858264 0.692879 1.12473 2.90712 3.74801 1.89192 6.98894 6.68789 1.22752 1.5078 2.77453 3.06083
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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