TCONS_00063042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063042
Unique NameTCONS_00063042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063042 ID=TCONS_00063042|Name=TCONS_00063042|organism=Clytia hemisphaerica|type=transcript|length=2379bp
CTGGTGCTTCGTTGTTTGAAGTTGAATTCAAAATAGTAATCACTCATTTG
TTATTCTGTTGGCATGACATTTTTTGATGGATTTGTTGGTATTCCAGGAT
GCTTGCGCCAAAAGTATCGCATTTAATGAGACGGATTGATTCTTTTGCGA
TAACCATGTTCCTTTCACTGtttcaatttgattttcaatttatcaaaaaa
tattttcattcttGTTAGAGAGGTCATTCGACTATTCGTGGTTGGTTGGT
TACGTGCATCAAAAAATTCCTTATAAAACATTGTTTTAATAGCAAGTAAT
TATTTAGTCGTTAATCGATAATTTCATTAATTGACATGTTAAATAGCAAC
CCGATTGAATGCAATTTCatttatattcaaattttttattctcGTCTAGG
TCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCGATG
CGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAAGGC
AATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTCAAC
GGAGTGATGTATTGTTGAGAGTCAACGACGAGCTGTTACAACACAAACTT
CAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATCGAG
AAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAATAG
cGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACAAGAAGAA
GCTCTCTCCTCTCTAAATAAGGACAAATCTCTTTCCTCGCCAAATATATA
TCAAAATAACGGGACGAACGCTGGACATTTTACTCATCCAAACGGAAACG
TCGGTGCAAATCGTCTTACCAAAAGTGTCCCAAACTCACCGCGCGGTCTT
CCACTATCGAACGATTCTAACCGCTCCACCACTTCATCAACGACGTCTAG
TGTGACGTCAGAACCTCCGCGTACTCGattgaatctgaaaaatatcgtcA
AATTTAAAGAGcaatTAATGGAGCGTAACCAGACATTGAAAACTGACATT
GAACtgttgaaattcaacaaaacagACGTCCCAAAGACTTCCTCTGTCTC
ATCATTGAATAATAAAAAGGAATTACCCGCCATAAAGAGCAATCGGCGCT
CTGATGCCGGAGGCAAAGGCGGCTCAAATCAAACCACTCCCCAATCCTCC
TTTGACGCCAGTGAAGTTTCTTGTAAGAAATGAAGAGGGGTGATTCTGGT
AAGCTTTTGAATGAGGAGATAAAGTGGATTTAGGTTGATTTAGGTTCACA
GTATTGAACTTAGCAGACATTCTTCAACAACACGTGACACGTGACTTGAA
GGTGAGAAAAAGTGTCGAGGACAAAAACATTTGCATTTgtatcatgcaaa
atattgaTGTCCTTttctttggtaaaaaaaaactatttctgCAAAGTGTA
CAATGATTGATTTAAAACTTTTACCATACATTATTGGCATTAGAAATCTG
ACAAAACTGCCAGACAAGACTGTTCCTTGTTCTGTTACATTTGTCAAGTG
TCAAGTTGCCAGTTTTGGTTGTTCATGGACCAGCAAGGTTCAGTTCTTTT
AGACACGTGTGATTCACGGGCATATTTGTTATTGAGAAATATTTGCAATA
ATAATTTGAATAGagtttagctctagtttagatggcctacttttcgccct
gcctattctaattgtgagaTAAAGTGAGCAGAtagttggctgtctaaagt
cataGATTACCCTCTATTGAcgtcttctttcaatcttttccgaGCAAACT
ACCAACTTTGCGACCACTTTTCGTCTACTCTACAATAAGAATAGGCAGAG
CGAAAGATCGACCATCTTGGTAAAAAAGTGTAGTCCCTTGAACAGTTGAA
CAAAACTGCGTTTTTTGCATTGCTCTTCAATACCAGAgtaaccagaagaa
atttcttgcGATGACTGATGAACGAGGTCACATTTTCAATGGTAATTTAT
TTCGAAAACCTTTTGGTAATGTATTTAATTGAACGCCAAAAAACTCACAG
AGATTGCCCAAAATaaggtgaaattttttccacaGTTCAGTTTCACCGTG
AATGAGTTATTGAATACAAATGAACGAGGGATAAACGGCTATTGCTAGTC
AACTAGTAGATAAACacaatttccaattttttacaagcacactttaaact
ttctttaatatttttttagactatgataatttttttataataatattttg
acaaaagtaATATTATGCATGCACTCTGTACATATATTTTGTAAATACCC
ATAAAAAGAATATCTAACCAGCAATGACCAAAGATAattaatcatgataa
aataacTTGTCCTTAAAGGTTTTATGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_378:1627..5595+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063042 ID=TCONS_00063042|Name=TCONS_00063042|organism=Clytia hemisphaerica|type=transcript|length=3969bp|location=Sequence derived from alignment at scaffold_378:1627..5595+ (Clytia hemisphaerica)
CTGGTGCTTCGTTGTTTGAAGTTGAATTCAAAATAGTAATCACTCATTTG
TTATTCTGTTGGCATGACATTTTTTGATGGATTTGTTGGTATTCCAGGAT
GCTTGCGCCAAAAGTATCGCATTTAATGAGACGGATTGATTCTTTTGCGA
TAACCATGTTCCTTTCACTGtttcaatttgattttcaatttatcaaaaaa
tattttcattcttGTTAGAGAGGTCATTCGACTATTCGTGGTTGGTTGGT
TACGTGCATCAAAAAATTCCTTATAAAACATTGTTTTAATAGCAAGTAAT
TATTTAGTCGTTAATCGATAATTTCATTAATTGACATGTTAAATAGCAAC
CCGATTGAATGCAATTTCatttatattcaaattttttattctcGTCTAGG
TCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCGATG
CGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAAGGC
AATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTCAAC
GGAGTGATGTATTGTTGAGAGTCAACGACGAGCTGTTACAACACAAACTT
CAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATCGAG
AAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAATAG
GTAACGGGTTTcccgttttttataagcaaatgtctacccctatatcaggc
tcgcattatgcttagcattctattgttcttaaaaaatagaGCTactgttt
aggtaccaaaaatgagcctgcatatgcttataaacgttgtACTAAAAACA
TTTACCTCTCCATGCTTAGGATCCTACTTCTNtgcatatgcttataaacg
ttgtACTAAAAACATTTACCTCTCCATGCTTAGGATCCTACTTCTAATAT
TTGTTTTCCTATCAGAGGAATTTTAACTTCAACTTTTTCTAGACAAGTAG
GCGACCGACAGAGGGCCATTTAAAACGGTCGTATCTCGACatgaaatttt
ctaattttaaagGTGTTTCTAACTTTTATAATttaacataaatttttttt
acagcGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACAAGA
AGAAGCTCTCTCCTCTCTAAATAAGGTATGAAGAAGGAGTTTGTCGTGTA
AGATTTCATCTGCTAACTCTAGAGAGTTTGTGCTTTTGATAGCAACTTTT
ACAGTTAGCCAATAATATTAAggccatgttcgcacgtgacggttcaTTCA
AGAAGTCTTTTCTAACCAATTGAATGGCTTCATTCCGTTTCGAGCGAAAC
TGAACCGTCACGTGCGAGCATGTTCGATAAAAAATAAGCATACCTAAAaa
ctgaaatgcaaaaaaaattcgtgcagcttttctaaaacgctgactTTTTT
Cagggttacttttaaagctgtttgagctttcttagaccaaagatttttac
ctgcggcgccaaattacaaagaaaactttcattcttTGTACCGGATCAAT
CTTCCAACTTAAAAATTCGAGATTTGCATGAACCCAAAAAAATCAACAAg
tctaagcatataaataatgataatttaaggctgaaaatgagattttgcta
agcatattgagCCTCAACCCGATTTTCCCgcttatgcttataaaaaaaag
agtgtatctGGTTGTTAAATTAATATTCCTTCGGCTTAATTTCATAGGAC
AAATCTCTTTCCTCGCCAAATATATATCAAAATAACGGGACGAACGCTGG
ACATTTTACTCATCCAAACGGAAACGTCGGTGCAAATCGTCTTACCAAAA
GTGTCCCAAACTCACCGCGCGGTCTTCCACTATCGAACGATTCTAACCGC
TCCACCACTTCATCAACGACGTCTAGTGTGACGTCAGAACCTCCGCGTAC
TCGattgaatctgaaaaatatcgtcAAATTTAAAGAGGTTTGGTCAAAAA
TTAGAATCACTAACTAACCGTCACTTTATCCTTTTTTCattcgggggggg
gggctgagaGTTACAAGGGTTGGAGAATGTTACGCTTTGAGGGACTTTAG
ATAGTAATTTCGTTGGAATTACGAAAGAATTTTGTGTCCTTTTTGATGAG
TGATAGTTTTTGCACCCATAGAAAGACTTCAGAAGGCGAGAAAAAAACCC
GCTTCTTTTTGCACTTGCTACAAACTCTTTAGCTTTAAAAACCCTCTcaa
tctagaaaaaaatcaaatagaaTCAACAACAAGCGACAGTTCTTCTGCAT
CCTTAACTATATTTCTtattcgtgttttttttttcagcaatTAATGGAGC
GTAACCAGACATTGAAAACTGACATTGAACtgttgaaattcaacaaaaca
gACGTCCCAAAGACTTCCTCTGTCTCATCATTGAATAATAAAAAGGTATG
AAGAATTTCATCCTCGATATAGTTAGAGTTTTCAATCATAAATTATCGCT
CCAAAGTTGGTCGTCTTTTTTTTCATCAGCAACTGTTAAATTCCATGATC
TTTTTGTACAATATGCcttaaagaaacttttttttgagaaCTAGCTAACG
AATTAAtgtgattttttgtttaaataaaACACTcatttgtagacaaaaaa
tcaatttaccATCAAAAAGGAGCTCACATTGGCTCATTTctattttcgtt
cttttttagGAATTACCCGCCATAAAGAGCAATCGGCGCTCTGATGCCGG
AGGCAAAGGCGGCTCAAATCAAACCACTCCCCAATCCTCCTTTGACGCCA
GTGAAGTTTCTTGTAAGAAATGAAGAGGGGTGATTCTGGTAAGCTTTTGA
ATGAGGAGATAAAGTGGATTTAGGTTGATTTAGGTTCACAGTATTGAACT
TAGCAGACATTCTTCAACAACACGTGACACGTGACTTGAAGGTGAGAAAA
AGTGTCGAGGACAAAAACATTTGCATTTgtatcatgcaaaatattgaTGT
CCTTttctttggtaaaaaaaaactatttctgCAAAGTGTACAATGATTGA
TTTAAAACTTTTACCATACATTATTGGCATTAGAAATCTGACAAAACTGC
CAGACAAGACTGTTCCTTGTTCTGTTACATTTGTCAAGTGTCAAGTTGCC
AGTTTTGGTTGTTCATGGACCAGCAAGGTTCAGTTCTTTTAGACACGTGT
GATTCACGGGCATATTTGTTATTGAGAAATATTTGCAATAATAATTTGAA
TAGagtttagctctagtttagatggcctacttttcgccctgcctattcta
attgtgagaTAAAGTGAGCAGAtagttggctgtctaaagtcataGATTAC
CCTCTATTGAcgtcttctttcaatcttttccgaGCAAACTACCAACTTTG
CGACCACTTTTCGTCTACTCTACAATAAGAATAGGCAGAGCGAAAGATCG
ACCATCTTGGTAAAAAAGTGTAGTCCCTTGAACAGTTGAACAAAACTGCG
TTTTTTGCATTGCTCTTCAATACCAGAgtaaccagaagaaatttcttgcG
ATGACTGATGAACGAGGTCACATTTTCAATGGTAATTTATTTCGAAAACC
TTTTGGTAATGTATTTAATTGAACGCCAAAAAACTCACAGAGATTGCCCA
AAATaaggtgaaattttttccacaGTTCAGTTTCACCGTGAATGAGTTAT
TGAATACAAATGAACGAGGGATAAACGGCTATTGCTAGTCAACTAGTAGA
TAAACacaatttccaattttttacaagcacactttaaactttctttaata
tttttttagactatgataatttttttataataatattttgacaaaagtaA
TATTATGCATGCACTCTGTACATATATTTTGTAAATACCCATAAAAAGAA
TATCTAACCAGCAATGACCAAAGATAattaatcatgataaaataacTTGT
CCTTAAAGGTTTTATGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039492XLOC_039492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063042-exon-scaffold_378-1491911889:1627..2326TCONS_00063042-exon-scaffold_378-1491911889:1627..2326Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1510915933:1627..2326TCONS_00063042-exon-scaffold_378-1510915933:1627..2326Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1575043694:1627..2326TCONS_00063042-exon-scaffold_378-1575043694:1627..2326Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1491911889:2731..2801TCONS_00063042-exon-scaffold_378-1491911889:2731..2801Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1510915933:2731..2801TCONS_00063042-exon-scaffold_378-1510915933:2731..2801Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1575043694:2731..2801TCONS_00063042-exon-scaffold_378-1575043694:2731..2801Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1491911889:3374..3613TCONS_00063042-exon-scaffold_378-1491911889:3374..3613Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1510915933:3374..3613TCONS_00063042-exon-scaffold_378-1510915933:3374..3613Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1575043694:3374..3613TCONS_00063042-exon-scaffold_378-1575043694:3374..3613Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1491911889:3964..4071TCONS_00063042-exon-scaffold_378-1491911889:3964..4071Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1510915933:3964..4071TCONS_00063042-exon-scaffold_378-1510915933:3964..4071Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1575043694:3964..4071TCONS_00063042-exon-scaffold_378-1575043694:3964..4071Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1491911889:4336..5595TCONS_00063042-exon-scaffold_378-1491911889:4336..5595Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1510915933:4336..5595TCONS_00063042-exon-scaffold_378-1510915933:4336..5595Clytia hemisphaericaexon
TCONS_00063042-exon-scaffold_378-1575043694:4336..5595TCONS_00063042-exon-scaffold_378-1575043694:4336..5595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_378supercontigscaffold_378:1627..5595 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.49448	3.05049	0.668479	0.426027	7.60208	4.78986	9.6157	11.7491	9.99887	8.67149	9.50946	6.8558	10.4584	8.46362	6.49706	8.08673	4.32702	4.02697	7.80801	12.851	5.24995	4.36943	6.99123	7.24996	4.34382	5.84759	3.76742	2.92925	5.41921	7.37962
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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