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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063043 ID=TCONS_00063043|Name=TCONS_00063043|organism=Clytia hemisphaerica|type=transcript|length=1539bp AGGTCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCG ATGCGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAA GGCAATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTC AACGGAGTGATGTATTGTTGAGAGTCAACGACGAGCTGTTACAACACAAA CTTCAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATC GAGAAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAA TAGcGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACAAGAA GAAGCTCTCTCCTCTCTAAATAAGGACAAATCTCTTTCCTCGCCAAATAT ATATCAAAATAACGGGACGAACGCTGGACATTTTACTCATCCAAACGGAA ACGTCGGTGCAAATCGTCTTACCAAAAGTGTCCCAAACTCACCGCGCGGT CTTCCACTATCGAACGATTCTAACCGCTCCACCACTTCATCAACGACGTC TAGTGTGACGTCAGAACCTCCGCGTACTCGattgaatctgaaaaatatcg tcAAATTTAAAGAGcaatTAATGGAGCGTAACCAGACATTGAAAACTGAC ATTGAACtgttgaaattcaacaaaacagACGTCCCAAAGACTTCCTCTGT CTCATCATTGAATAATAAAAAGGAATTACCCGCCATAAAGAGCAATCGGC GCTCTGATGCCGGAGGCAAAGGCGGCTCAAATCAAACCACTCCCCAATCC TCCTTTGACGCCAGTGAAGTTTCTTGTAAGAAATGAAGAGGGGTGATTCT GGTAAGCTTTTGAATGAGGAGATAAAGTGGATTTAGGTTGATTTAGGTTC ACAGTATTGAACTTAGCAGACATTCTTCAACAACACGTGACACGTGACTT GAAGCAAACTACCAACTTTGCGACCACTTTTCGTCTACTCTACAATAAGA ATAGGCAGAGCGAAAGATCGACCATCTTGGTAAAAAAGTGTAGTCCCTTG AACAGTTGAACAAAACTGCGTTTTTTGCATTGCTCTTCAATACCAGAgta accagaagaaatttcttgcGATGACTGATGAACGAGGTCACATTTTCAAT GGTAATTTATTTCGAAAACCTTTTGGTAATGTATTTAATTGAACGCCAAA AAACTCACAGAGATTGCCCAAAATaaggtgaaattttttccacaGTTCAG TTTCACCGTGAATGAGTTATTGAATACAAATGAACGAGGGATAAACGGCT ATTGCTAGTCAACTAGTAGATAAACacaatttccaattttttacaagcac actttaaactttctttaatatttttttagactatgataatttttttataa taatattttgacaaaagtaATATTATGCATGCACTCTGTACATATATTTT GTAAATACCCATAAAAAGAATATCTAACCAGCAATGACCAAAGATAatta atcatgataaaataacTTGTCCTTAAAGGTTTTATGTTT Run BLAST on NCBI protein sequence of TCONS_00063043-protein >TCONS_00063043-protein ID=TCONS_00063043-protein|Name=TCONS_00063043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
VSDYDGTVSGIYQLNSMRQHAVSPSPGIEEITKAMPGVRKCLSPECGCCQ RSDVLLRVNDELLQHKLQLEEQNRNLLEEIQVSRRFYQGTLADLTAQLSI AENRIKYLQEVVNTQEEALSSLNKDKSLSSPNIYQNNGTNAGHFTHPNGN VGANRLTKSVPNSPRGLPLSNDSNRSTTSSTTSSVTSEPPRTRLNLKNIV KFKEQLMERNQTLKTDIELLKFNKTDVPKTSSVSSLNNKKELPAIKSNRR SDAGGKGGSNQTTPQSSFDASEVSCKK Run BLAST on NCBI transcript from alignment at scaffold_378:2024..5595+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063043 ID=TCONS_00063043|Name=TCONS_00063043|organism=Clytia hemisphaerica|type=transcript|length=3572bp|location=Sequence derived from alignment at scaffold_378:2024..5595+ (Clytia hemisphaerica) AGGTCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCG
ATGCGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAA
GGCAATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTC
AACGGAGTGATGTATTGTTGAGAGTCAACGACGAGCTGTTACAACACAAA
CTTCAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATC
GAGAAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAA
TAGGTAACGGGTTTcccgttttttataagcaaatgtctacccctatatca
ggctcgcattatgcttagcattctattgttcttaaaaaatagaGCTactg
tttaggtaccaaaaatgagcctgcatatgcttataaacgttgtACTAAAA
ACATTTACCTCTCCATGCTTAGGATCCTACTTCTNtgcatatgcttataa
acgttgtACTAAAAACATTTACCTCTCCATGCTTAGGATCCTACTTCTAA
TATTTGTTTTCCTATCAGAGGAATTTTAACTTCAACTTTTTCTAGACAAG
TAGGCGACCGACAGAGGGCCATTTAAAACGGTCGTATCTCGACatgaaat
tttctaattttaaagGTGTTTCTAACTTTTATAATttaacataaattttt
tttacagcGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACA
AGAAGAAGCTCTCTCCTCTCTAAATAAGGTATGAAGAAGGAGTTTGTCGT
GTAAGATTTCATCTGCTAACTCTAGAGAGTTTGTGCTTTTGATAGCAACT
TTTACAGTTAGCCAATAATATTAAggccatgttcgcacgtgacggttcaT
TCAAGAAGTCTTTTCTAACCAATTGAATGGCTTCATTCCGTTTCGAGCGA
AACTGAACCGTCACGTGCGAGCATGTTCGATAAAAAATAAGCATACCTAA
AaactgaaatgcaaaaaaaattcgtgcagcttttctaaaacgctgactTT
TTTCagggttacttttaaagctgtttgagctttcttagaccaaagatttt
tacctgcggcgccaaattacaaagaaaactttcattcttTGTACCGGATC
AATCTTCCAACTTAAAAATTCGAGATTTGCATGAACCCAAAAAAATCAAC
AAgtctaagcatataaataatgataatttaaggctgaaaatgagattttg
ctaagcatattgagCCTCAACCCGATTTTCCCgcttatgcttataaaaaa
aagagtgtatctGGTTGTTAAATTAATATTCCTTCGGCTTAATTTCATAG
GACAAATCTCTTTCCTCGCCAAATATATATCAAAATAACGGGACGAACGC
TGGACATTTTACTCATCCAAACGGAAACGTCGGTGCAAATCGTCTTACCA
AAAGTGTCCCAAACTCACCGCGCGGTCTTCCACTATCGAACGATTCTAAC
CGCTCCACCACTTCATCAACGACGTCTAGTGTGACGTCAGAACCTCCGCG
TACTCGattgaatctgaaaaatatcgtcAAATTTAAAGAGGTTTGGTCAA
AAATTAGAATCACTAACTAACCGTCACTTTATCCTTTTTTCattcggggg
ggggggctgagaGTTACAAGGGTTGGAGAATGTTACGCTTTGAGGGACTT
TAGATAGTAATTTCGTTGGAATTACGAAAGAATTTTGTGTCCTTTTTGAT
GAGTGATAGTTTTTGCACCCATAGAAAGACTTCAGAAGGCGAGAAAAAAA
CCCGCTTCTTTTTGCACTTGCTACAAACTCTTTAGCTTTAAAAACCCTCT
caatctagaaaaaaatcaaatagaaTCAACAACAAGCGACAGTTCTTCTG
CATCCTTAACTATATTTCTtattcgtgttttttttttcagcaatTAATGG
AGCGTAACCAGACATTGAAAACTGACATTGAACtgttgaaattcaacaaa
acagACGTCCCAAAGACTTCCTCTGTCTCATCATTGAATAATAAAAAGGT
ATGAAGAATTTCATCCTCGATATAGTTAGAGTTTTCAATCATAAATTATC
GCTCCAAAGTTGGTCGTCTTTTTTTTCATCAGCAACTGTTAAATTCCATG
ATCTTTTTGTACAATATGCcttaaagaaacttttttttgagaaCTAGCTA
ACGAATTAAtgtgattttttgtttaaataaaACACTcatttgtagacaaa
aaatcaatttaccATCAAAAAGGAGCTCACATTGGCTCATTTctattttc
gttcttttttagGAATTACCCGCCATAAAGAGCAATCGGCGCTCTGATGC
CGGAGGCAAAGGCGGCTCAAATCAAACCACTCCCCAATCCTCCTTTGACG
CCAGTGAAGTTTCTTGTAAGAAATGAAGAGGGGTGATTCTGGTAAGCTTT
TGAATGAGGAGATAAAGTGGATTTAGGTTGATTTAGGTTCACAGTATTGA
ACTTAGCAGACATTCTTCAACAACACGTGACACGTGACTTGAAGGTGAGA
AAAAGTGTCGAGGACAAAAACATTTGCATTTgtatcatgcaaaatattga
TGTCCTTttctttggtaaaaaaaaactatttctgCAAAGTGTACAATGAT
TGATTTAAAACTTTTACCATACATTATTGGCATTAGAAATCTGACAAAAC
TGCCAGACAAGACTGTTCCTTGTTCTGTTACATTTGTCAAGTGTCAAGTT
GCCAGTTTTGGTTGTTCATGGACCAGCAAGGTTCAGTTCTTTTAGACACG
TGTGATTCACGGGCATATTTGTTATTGAGAAATATTTGCAATAATAATTT
GAATAGagtttagctctagtttagatggcctacttttcgccctgcctatt
ctaattgtgagaTAAAGTGAGCAGAtagttggctgtctaaagtcataGAT
TACCCTCTATTGAcgtcttctttcaatcttttccgaGCAAACTACCAACT
TTGCGACCACTTTTCGTCTACTCTACAATAAGAATAGGCAGAGCGAAAGA
TCGACCATCTTGGTAAAAAAGTGTAGTCCCTTGAACAGTTGAACAAAACT
GCGTTTTTTGCATTGCTCTTCAATACCAGAgtaaccagaagaaatttctt
gcGATGACTGATGAACGAGGTCACATTTTCAATGGTAATTTATTTCGAAA
ACCTTTTGGTAATGTATTTAATTGAACGCCAAAAAACTCACAGAGATTGC
CCAAAATaaggtgaaattttttccacaGTTCAGTTTCACCGTGAATGAGT
TATTGAATACAAATGAACGAGGGATAAACGGCTATTGCTAGTCAACTAGT
AGATAAACacaatttccaattttttacaagcacactttaaactttcttta
atatttttttagactatgataatttttttataataatattttgacaaaag
taATATTATGCATGCACTCTGTACATATATTTTGTAAATACCCATAAAAA
GAATATCTAACCAGCAATGACCAAAGATAattaatcatgataaaataacT
TGTCCTTAAAGGTTTTATGTTT Coding sequence (CDS) from alignment at scaffold_378:2024..5595+ >TCONS_00063043 ID=TCONS_00063043|Name=TCONS_00063043|organism=Clytia hemisphaerica|type=CDS|length=4170bp|location=Sequence derived from alignment at scaffold_378:2024..5595+ (Clytia hemisphaerica) GTCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCGAT GCGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAAGG CAATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTCAA CGGAGTGATGTATTGTTGAGAGTCAACGACGAGCTGTTACAACACAAACT TCAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATCGA GAAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAATA GcGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACAAGAAGA AGCTCTCTCCTCTCTAAATAAGGACAAATCTCTTTCCTCGCCAAATATAT ATCAAAATAACGGGACGAACGCTGGACATTTTACTCATCCAAACGGAAAC GTCGGTGCAAATCGTCTTACCAAAAGTGTCCCAAACTCACCGCGCGGTCT TCCACTATCGAACGATTCTAACCGCTCCACCACTTCATCAACGACGTCTA GTGTGACGTCAGAACCTCCGCGTACTCGattgaatctgaaaaatatcgtc AAATTTAAAGAGcaatTAATGGAGCGTAACCAGACATTGAAAACTGACAT TGAACtgttgaaattcaacaaaacagACGTCCCAAAGACTTCCTCTGTCT CATCATTGAATAATAAAAAGGAATTACCCGCCATAAAGAGCAATCGGCGC TCTGATGCCGGAGGCAAAGGCGGCTCAAATCAAACCACTCCCCAATCCTC CTTTGACGCCAGTGAAGTTTCTTGTAAGAAATGAGTCAGCGACTATGACG GAACTGTCTCAGGTATTTATCAATTGAATTCGATGCGTCAACACGCTGTG TCACCGTCTCCTGGTATTGAGGAGATAACAAAGGCAATGCCCGGTGTACG GAAATGTTTATCTCCTGAATGTGGATGTTGTCAACGGAGTGATGTATTGT TGAGAGTCAACGACGAGCTGTTACAACACAAACTTCAACTTGAGGAGCAG AATAGAAACCTGTTGGAGGAAATTCAAGTATCGAGAAGATTTTATCAGGG AACATTGGCAGATTTGACTGCGCAACTTTCAATAGcGGAGAATCGAATCA AATATCTTCAAGAAGTGGTGAATACACAAGAAGAAGCTCTCTCCTCTCTA AATAAGGACAAATCTCTTTCCTCGCCAAATATATATCAAAATAACGGGAC GAACGCTGGACATTTTACTCATCCAAACGGAAACGTCGGTGCAAATCGTC TTACCAAAAGTGTCCCAAACTCACCGCGCGGTCTTCCACTATCGAACGAT TCTAACCGCTCCACCACTTCATCAACGACGTCTAGTGTGACGTCAGAACC TCCGCGTACTCGattgaatctgaaaaatatcgtcAAATTTAAAGAGcaat TAATGGAGCGTAACCAGACATTGAAAACTGACATTGAACtgttgaaattc aacaaaacagACGTCCCAAAGACTTCCTCTGTCTCATCATTGAATAATAA AAAGGAATTACCCGCCATAAAGAGCAATCGGCGCTCTGATGCCGGAGGCA AAGGCGGCTCAAATCAAACCACTCCCCAATCCTCCTTTGACGCCAGTGAA GTTTCTTGTAAGAAATGAGTCAGCGACTATGACGGAACTGTCTCAGGTAT TTATCAATTGAATTCGATGCGTCAACACGCTGTGTCACCGTCTCCTGGTA TTGAGGAGATAACAAAGGCAATGCCCGGTGTACGGAAATGTTTATCTCCT GAATGTGGATGTTGTCAACGGAGTGATGTATTGTTGAGAGTCAACGACGA GCTGTTACAACACAAACTTCAACTTGAGGAGCAGAATAGAAACCTGTTGG AGGAAATTCAAGTATCGAGAAGATTTTATCAGGGAACATTGGCAGATTTG ACTGCGCAACTTTCAATAGcGGAGAATCGAATCAAATATCTTCAAGAAGT GGTGAATACACAAGAAGAAGCTCTCTCCTCTCTAAATAAGGACAAATCTC TTTCCTCGCCAAATATATATCAAAATAACGGGACGAACGCTGGACATTTT ACTCATCCAAACGGAAACGTCGGTGCAAATCGTCTTACCAAAAGTGTCCC AAACTCACCGCGCGGTCTTCCACTATCGAACGATTCTAACCGCTCCACCA CTTCATCAACGACGTCTAGTGTGACGTCAGAACCTCCGCGTACTCGattg aatctgaaaaatatcgtcAAATTTAAAGAGcaatTAATGGAGCGTAACCA GACATTGAAAACTGACATTGAACtgttgaaattcaacaaaacagACGTCC CAAAGACTTCCTCTGTCTCATCATTGAATAATAAAAAGGAATTACCCGCC ATAAAGAGCAATCGGCGCTCTGATGCCGGAGGCAAAGGCGGCTCAAATCA AACCACTCCCCAATCCTCCTTTGACGCCAGTGAAGTTTCTTGTAAGAAAT GAGTCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCG ATGCGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAA GGCAATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTC AACGGAGTGATGTATTGTTGAGAGTCAACGACGAGCTGTTACAACACAAA CTTCAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATC GAGAAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAA TAGcGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACAAGAA GAAGCTCTCTCCTCTCTAAATAAGGACAAATCTCTTTCCTCGCCAAATAT ATATCAAAATAACGGGACGAACGCTGGACATTTTACTCATCCAAACGGAA ACGTCGGTGCAAATCGTCTTACCAAAAGTGTCCCAAACTCACCGCGCGGT CTTCCACTATCGAACGATTCTAACCGCTCCACCACTTCATCAACGACGTC TAGTGTGACGTCAGAACCTCCGCGTACTCGattgaatctgaaaaatatcg tcAAATTTAAAGAGcaatTAATGGAGCGTAACCAGACATTGAAAACTGAC ATTGAACtgttgaaattcaacaaaacagACGTCCCAAAGACTTCCTCTGT CTCATCATTGAATAATAAAAAGGAATTACCCGCCATAAAGAGCAATCGGC GCTCTGATGCCGGAGGCAAAGGCGGCTCAAATCAAACCACTCCCCAATCC TCCTTTGACGCCAGTGAAGTTTCTTGTAAGAAATGAGTCAGCGACTATGA CGGAACTGTCTCAGGTATTTATCAATTGAATTCGATGCGTCAACACGCTG TGTCACCGTCTCCTGGTATTGAGGAGATAACAAAGGCAATGCCCGGTGTA CGGAAATGTTTATCTCCTGAATGTGGATGTTGTCAACGGAGTGATGTATT GTTGAGAGTCAACGACGAGCTGTTACAACACAAACTTCAACTTGAGGAGC AGAATAGAAACCTGTTGGAGGAAATTCAAGTATCGAGAAGATTTTATCAG GGAACATTGGCAGATTTGACTGCGCAACTTTCAATAGcGGAGAATCGAAT CAAATATCTTCAAGAAGTGGTGAATACACAAGAAGAAGCTCTCTCCTCTC TAAATAAGGACAAATCTCTTTCCTCGCCAAATATATATCAAAATAACGGG ACGAACGCTGGACATTTTACTCATCCAAACGGAAACGTCGGTGCAAATCG TCTTACCAAAAGTGTCCCAAACTCACCGCGCGGTCTTCCACTATCGAACG ATTCTAACCGCTCCACCACTTCATCAACGACGTCTAGTGTGACGTCAGAA CCTCCGCGTACTCGattgaatctgaaaaatatcgtcAAATTTAAAGAGca atTAATGGAGCGTAACCAGACATTGAAAACTGACATTGAACtgttgaaat tcaacaaaacagACGTCCCAAAGACTTCCTCTGTCTCATCATTGAATAAT AAAAAGGAATTACCCGCCATAAAGAGCAATCGGCGCTCTGATGCCGGAGG CAAAGGCGGCTCAAATCAAACCACTCCCCAATCCTCCTTTGACGCCAGTG AAGTTTCTTGTAAGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063043-exon-scaffold_378-1491911889:2024..2326 | TCONS_00063043-exon-scaffold_378-1491911889:2024..2326 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1510915933:2024..2326 | TCONS_00063043-exon-scaffold_378-1510915933:2024..2326 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1575043694:2024..2326 | TCONS_00063043-exon-scaffold_378-1575043694:2024..2326 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1491911889:2731..2801 | TCONS_00063043-exon-scaffold_378-1491911889:2731..2801 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1510915933:2731..2801 | TCONS_00063043-exon-scaffold_378-1510915933:2731..2801 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1575043694:2731..2801 | TCONS_00063043-exon-scaffold_378-1575043694:2731..2801 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1491911889:3374..3613 | TCONS_00063043-exon-scaffold_378-1491911889:3374..3613 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1510915933:3374..3613 | TCONS_00063043-exon-scaffold_378-1510915933:3374..3613 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1575043694:3374..3613 | TCONS_00063043-exon-scaffold_378-1575043694:3374..3613 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1491911889:3964..4071 | TCONS_00063043-exon-scaffold_378-1491911889:3964..4071 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1510915933:3964..4071 | TCONS_00063043-exon-scaffold_378-1510915933:3964..4071 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1575043694:3964..4071 | TCONS_00063043-exon-scaffold_378-1575043694:3964..4071 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1491911889:4336..4567 | TCONS_00063043-exon-scaffold_378-1491911889:4336..4567 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1510915933:4336..4567 | TCONS_00063043-exon-scaffold_378-1510915933:4336..4567 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1575043694:4336..4567 | TCONS_00063043-exon-scaffold_378-1575043694:4336..4567 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1491911889:5011..5595 | TCONS_00063043-exon-scaffold_378-1491911889:5011..5595 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1510915933:5011..5595 | TCONS_00063043-exon-scaffold_378-1510915933:5011..5595 | Clytia hemisphaerica | exon |
TCONS_00063043-exon-scaffold_378-1575043694:5011..5595 | TCONS_00063043-exon-scaffold_378-1575043694:5011..5595 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_378 | supercontig | scaffold_378:2024..5595 + |
Blast
The following BLAST results are available for this feature:
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