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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063045 ID=TCONS_00063045|Name=TCONS_00063045|organism=Clytia hemisphaerica|type=transcript|length=1651bp
TGGTACGATTAATCTCCATTGGAAATTAGCAGTATACCCGCCGACCCTGT
AGGTCCACAACTTAAGCTACTGGTCTGAATTGACAAATGGAAAACCGTGG
ATCAAATTTAAACAAATGATAAGCTTTTAGTTTTAAAGGTATATTTATCC
AACATATACAAAtcgaaaataaaacaaaatagaaaaaattgttaCCTACT
TCATGAGAAAATAACGGAAACTACAACAACAATGTGTTTTGTAAGAAgca
tgaaaaatttttaaaacaagtgCCTAAATATATATCTGGTCTTGATGTGG
CTTGTAATCACTAACTTTTTGAGAATCACGCcctttcatatttttattga
GGCCTCTATACATCTAACAACTTTTAACAGGCGGTCAGCTTTTACGGAGA
CTGGTAACAAAAATACAAGGAAATTTCTTCTCGACGGAGATATCGTGTAG
GAGCGCTCttgtaaaaaaatgtaagatttatTTGCTTTGAAGTAATGAAA
GAAACGTTAATTAAAACGTTAAAAACGTTAATTTGCGAGTGCTACACGTA
GAAAAGAAACCTCAAAACCAGGAACAAACCAATGGGATACTTCAAAAACG
GATTAAATTAAAACGAAGTAAAATGTACAATGCTCTTCAATGAATTGTAT
TTCAAACAATTTCTTAGTAAACACTCAAATTTAATCCGTTTATGAAAgaa
catgaacatataaacgtcCATCTTCtattgtgtctttgaagcgagcttta
TTGCCGCCTATATTTCAAATTtggtatgaaaaaaatccgacaatatccCG
TCACAATTTTACTTCTTTGAATTACTTAGGTAAAAGGAACgcTGAAACGC
AGAATTCCAACTGcgtatatttttgaataaagctgacgatgatttcacct
tatctttgttatgatatagataaaaggcttgagaagagtagaacaacaga
gactttgtcgaagttttgacgttgtttgcaaggtattcccaagaggtata
ccatcagaatttactgtttcattttatgttttttaacgaggcggcaacga
aacTAGCAGTACTTTCTACAAAAACataaaggagatggatgtccattCGT
TTATATGTTCACGGAAAGAACACTTGAAaaattctaattaaaaaaaactt
ccatTTAAATTTAACCTTTGACAAATAATAATTAGATCAAACGACCTTCC
AAACATTTTATTATAAAATACCGATTCGAAAAGTCAATTCAATGTACTTG
TCTTCAAAAAAGCGACGTAAATCTTGTGCATGAATATCTTCATCCAAAGG
GTGTACCCATACCAGAATCCATTAATGGCTTGTCCAGAAAAAGGCAAGTT
TTCCAGCCATAGGTACTTTACTTACGTACATTCGCATAGGACCATCGTCA
AATCATTCCAACGTTCTGCACTTTACAAAAATATTGATCACCGACGAGAT
GACTCTCAAAAAATTCCATCTTCcatcaaataaataaattatcaaaaaca
tttcaTCTACCTTTAATGCGTTATTGGATTTTACTattgatttttttcga
aattttcaatttgatgATGAGTATGATGATAAATTAGTCGACTTTGACAG
CACCATAGATTTTGTACACAAAGTAGAAGCATGCTAAGAATCCAATGGTA
C Run BLAST on NCBI transcript from alignment at scaffold_378:26040..27767+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063045 ID=TCONS_00063045|Name=TCONS_00063045|organism=Clytia hemisphaerica|type=transcript|length=1728bp|location=Sequence derived from alignment at scaffold_378:26040..27767+ (Clytia hemisphaerica)
TGGTACGATTAATCTCCATTGGAAATTAGCAGTATACCCGCCGACCCTGT
AGGTCCACAACTTAAGCTACTGGTCTGAATTGACAAATGGAAAACCGTGG
ATCAAATTTAAACAAATGATAAGCTTTTAGTTTTAAAGGTATATTTATCC
AACATATACAAAtcgaaaataaaacaaaatagaaaaaattgttaCCTACT
TCATGAGAAAATAACGGAAACTACAACAACAATGTGTTTTGTAAGAAgca
tgaaaaatttttaaaacaagtgCCTAAATATATATCTGGTCTTGATGTGG
CTTGTAATCACTAACTTTTTGAGAATCACGCcctttcatatttttattga
GGCCTCTATACATCTAACAACTTTTAACAGGCGGTCAGCTTTTACGGAGA
CTGGTAACAAAAATACAAGGAAATTTCTTCTCGACGGAGATATCGTGTAG
GAGCGCTCttgtaaaaaaatgtaagatttatTTGCTTTGAAGTAATGAAA
GAAACGTTAATTAAAACGTTAAAAACGTTAATTTGCGAGTGCTACACGTA
GAAAAGAAACCTCAAAACCAGGAACAAACCAATGGGATACTTCAAAAACG
GATTAAATTAAAACGAAGTAAAATGTACAATGCTCTTCAATGAATTGTAT
TTCAAACAATTTCTTAGTAAACACTCAAATTTAATCCGTTTATGAAAgaa
catgaacatataaacgtcCATCTTCtattgtgtctttgaagcgagcttta
TTGCCGCCTATATTTCAAATTtggtatgaaaaaaatccgacaatatccCG
TCACAATTTTACTTCTTTGAATTACTTAGGTAAAAGGAACATTATTcgta
attcacaaaagaattattctcaatttttttcataagcttgcaatgtattt
tatcaacatttttcaacgcTGAAACGCAGAATTCCAACTGcgtatatttt
tgaataaagctgacgatgatttcaccttatctttgttatgatatagataa
aaggcttgagaagagtagaacaacagagactttgtcgaagttttgacgtt
gtttgcaaggtattcccaagaggtataccatcagaatttactgtttcatt
ttatgttttttaacgaggcggcaacgaaacTAGCAGTACTTTCTACAAAA
ACataaaggagatggatgtccattCGTTTATATGTTCACGGAAAGAACAC
TTGAAaaattctaattaaaaaaaacttccatTTAAATTTAACCTTTGACA
AATAATAATTAGATCAAACGACCTTCCAAACATTTTATTATAAAATACCG
ATTCGAAAAGTCAATTCAATGTACTTGTCTTCAAAAAAGCGACGTAAATC
TTGTGCATGAATATCTTCATCCAAAGGGTGTACCCATACCAGAATCCATT
AATGGCTTGTCCAGAAAAAGGCAAGTTTTCCAGCCATAGGTACTTTACTT
ACGTACATTCGCATAGGACCATCGTCAAATCATTCCAACGTTCTGCACTT
TACAAAAATATTGATCACCGACGAGATGACTCTCAAAAAATTCCATCTTC
catcaaataaataaattatcaaaaacatttcaTCTACCTTTAATGCGTTA
TTGGATTTTACTattgatttttttcgaaattttcaatttgatgATGAGTA
TGATGATAAATTAGTCGACTTTGACAGCACCATAGATTTTGTACACAAAG
TAGAAGCATGCTAAGAATCCAATGGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063045-exon-scaffold_378-1491911889:26040..26879 | TCONS_00063045-exon-scaffold_378-1491911889:26040..26879 | Clytia hemisphaerica | exon |
| TCONS_00063045-exon-scaffold_378-1510915933:26040..26879 | TCONS_00063045-exon-scaffold_378-1510915933:26040..26879 | Clytia hemisphaerica | exon |
| TCONS_00063045-exon-scaffold_378-1575043694:26040..26879 | TCONS_00063045-exon-scaffold_378-1575043694:26040..26879 | Clytia hemisphaerica | exon |
| TCONS_00063045-exon-scaffold_378-1491911889:26957..27767 | TCONS_00063045-exon-scaffold_378-1491911889:26957..27767 | Clytia hemisphaerica | exon |
| TCONS_00063045-exon-scaffold_378-1510915933:26957..27767 | TCONS_00063045-exon-scaffold_378-1510915933:26957..27767 | Clytia hemisphaerica | exon |
| TCONS_00063045-exon-scaffold_378-1575043694:26957..27767 | TCONS_00063045-exon-scaffold_378-1575043694:26957..27767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_378 | supercontig | scaffold_378:26040..27767 + |
Blast
The following BLAST results are available for this feature:
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