TCONS_00063048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063048
Unique NameTCONS_00063048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063048 ID=TCONS_00063048|Name=TCONS_00063048|organism=Clytia hemisphaerica|type=transcript|length=1518bp
ACAAAAAGTTAAATGATTGCTTTAATCTGGAGAAAAACAAACTCAAGAAT
GATGAAATTCTATAAAACTGTAAAAGAAAATTTCCTTCACACCTACTGAT
CGTGAAAGTTTCCGTGCGACAAACAGGAGGTGATGTTTTTGATAGCTGCC
CCAGCGAAAACAATGCCAAGAACAGGGAGATGAAATGGGATGATTTCGTA
AGAGTAAGTTTGAATTTGACTTTGgttttcttttggttttttaATTCTCA
ACTTTTTACAATCCCAATTGGGAAAgtaaaatcagaacaaaaactAATGT
AATTAAtgtttatataattttttatgattttgtttattttactttttaat
ttaGCAAATTTTAAACCCTCGTCAGTTCATTCACACTGCTCCGGTGTATT
CGAGAGAAAAGAGGCTGTCGGCGTTCAGTCAAGAAATTTAAACCAATCTA
AACAGCCGTGTCGATTGGATCGGAACCTTTTGAAATTGTATCAAAATGAA
GAATTTCATCTTTGTGGTTATATTGTTGGTTTCTGTTGTTGAAATTGCCG
AATGTGGTCGTTATCTCCAACACCGGCGAAGATGTCCAGAGAAATGTTCG
AAGCGTGTAGCATTTGTTTGCGGTACTGATGGAAGAGCATTTTTAAATAT
GTGTGTTTTCAAACGAGAGCAATGCAAAAATAGTCAACTTAAACTTCGAA
ATTATGGCCCGTGCGAAGAAGTCTACGCAATCATCGAGGGGTCGCATTTT
CAACCATTGTGTACTGCAGACAATGAAAATCACTCTTCGAAACAGTTTTT
GGACATCCATGCTTGTATTACAAGAAAATACAAACAAGTTAAATGGTATG
GTGGCTATTGTGATACGAAGACTCCATTGAGATTTCCAACAAAACCAAAA
GGATTGTTGGATTGCCCAGATGTTTATGACCCTGTGTGCGGTTCTGATGA
CGAAACTTACTCCAATCAATGTGTCTTCGATAAACAGAATTATATCTTTG
CTGGGAAGCTCAGTGTCAAATGGCATGGGTACTGTCGATCTGTTTATTCT
GTGGTTGTGGGTTTGGAAGAAGAATTTCAACTGGTTTGCGCTTCTGATGG
AAACACATATTCAAGTTTGGTCGCCGTTCAAATAGCAAAGTGTCAAAATT
ACAGACTAAGAGTTGTTAGTCACGGACCATGCAAAGAAAGGGAGTAGTCA
TTCATGACAGGAAGAAGATGAACATCACAAACTTCGTGAGATCGATCAAG
CAAATTTATATAATCAACGTCGTGAATGTAAGAGGATATAGCCTTTCCCC
ACTGGGAATTTAACAATCTATTATATTTCTTTCATATACTTTTTTGACCG
AATCGATTTGTTATATTATAAGTTTTGGCAAGTTCCACATAGCTGCAATA
CTATAACAAgcataatttgaaattttcgtatttaaattttcaatgaaatt
ggaattatgtacttttttaacattttgaaatattcaaatagAAAATCCGG
ATTGAGATTGAAACACTA
Run BLAST on NCBI

transcript from alignment at scaffold_378:11599..17531-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063048 ID=TCONS_00063048|Name=TCONS_00063048|organism=Clytia hemisphaerica|type=transcript|length=5933bp|location=Sequence derived from alignment at scaffold_378:11599..17531- (Clytia hemisphaerica)
ACAAAAAGTTAAATGATTGCTTTAATCTGGAGAAAAACAAACTCAAGAAT
GATGAAATTCTATAAAACTGTAAAAGAAAATTTCCTTCACACCTACTGAT
CGTGAAAGTTTCCGTGCGACAAACAGGAGGTGATGTTTTTGATAGCTGCC
CCAGCGAAAACAATGCCAAGAACAGGGAGATGAAATGGGATGATTTCGTA
AGAGTAAGTTTGAATTTGACTTTGGTTTTCTTTTGGTTTTTTAATTCTCA
ACTTTTTACAATCCCAATTGGGAAAGTAAAATCAGAACAAAAACTAATGT
AATTAATGTTTATATAATTTTTTATGATTTTGTTTATTTTACTTTTTAAT
TTAGCAAATTTTAAACCCTCGTCAGTTCATTCACACTGCTCCGGTGTATT
CGAGAGAAAAGAGGCTGTCGGCGTTCAGTCAAGAAATTTAAACCAATCTA
AACAGTAATCGTTAGCTTATCTTTTCTTGTAATTGGTCCATATTGTAAAC
GACTGGATTGACCTTGGTATGCATGTTACCGCAATATAATTATGGGTCTT
GACCTTCATTCAATGATTAGAATAATGATGATCAGTTTCCTTAAGTGTTT
ATCGAAGAGGGTGTTTGTGTTTTCGTACATATACTCCTTATTTGGAAGTC
AGAATTCTCCCTCAAACGTCTGGAATCTTAGAACGTGTATCGTGCCATTT
CGTCCATTGTATAATTCTTGATTGGAGATGAAGATTTAATTGTAATAAAA
CATTTTAATGAGTTAAATTATTGTAATAGGTTTGTTTACTCTTCAAATGA
TCGAATCCTATTGGTTGAAAAGTACACTGCTCGACTCTTCGTGGCGGAAA
AAAGCAATATAAATAAGATACCCTCCTTCTATACTTCTAACTTCAATCAA
TAGGCCGTGTCGATTGGATCGGAACCTTTTGAAATTGTATCAAAATGAAG
AATTTCATCTTTGTGGTTATATTGTTGGTTTCTGTTGTTGAAATTGCCGA
ATGTGGTCGTTATCTCCAACACCGGCGTAAGTCATGAAATATTTTCAGGG
TATTTTTTAAACTCGTATAATTAAACTTGTATAATCGTTAAAATCGATGG
AAAAAAAGAGACCTTTCTGTGAATTCTTCTTTTTTTGTGAATCTTTTTTT
TACAAAACCTTTTTAAAGAATCAATTCATTGAAAACAGAAATTAACCTTA
CCAGTGATTGATCCTTCTTTTTTATAGGAAGATGTCCAGAGAAATGTTCG
AAGCGTGTAGCATTTGTTTGCGGTACTGATGGAAGAGCATTTTTAAATAT
GTGTGTTTTCAAACGAGAGCAATGCAAAAATAGTCAACTTAAACTTCGAA
ATTATGGCCCGTGCGAAGGTATGTTACTCTCTTATTATGGTACCATTTTA
AATTTAGAATTAGGTCCAGTATATAAGAATTAGGTCCAGTGGTTTTTAAC
AGAGCCTAAGTTTCGATCAAAATTAATTANGGTTTTTAACAGAGCCCAAG
TTTCGATCAAAATTAATTAGGGAAGTTTTGTCATTTTCAAATAATGAGTT
GGGAGTGCCAGATCTTTTATAAATGAGATAAAATCTTTTTATTATCCACA
TATTTTTTGCTTTCGTTCTTTCCTCATGGCAGTGTGATCCAGTTACATTG
AAAACGATTTTGTTTTTACTTTTACATTGAGAATGAAACTTGAAATGTTA
AACAAGAGTTTGAACTAAACCTCAATACAATCTTTGACGCTTTTTAGAAG
TCTACGCAATCATCGAGGGGTCGCATTTTCAACCATTGTGTACTGCAGAC
AATGAAAATCACTCTTCGAAACAGTTTTTGGACATCCATGCTTGTATTAC
AAGAAAATACAAACAAGTTAAATGGTATGGTGGCTATTGTGGTAAGTCTA
GGGACATTGAGTTTAAAACCCTAAGGCGTCTAAAGGAGAAATTTTTTCAA
AACCTTTCTCAAACAAGAAAAAGTGAAGCCTTAAGTTTTGCGCCGCATTT
AAAATAACAGATGGAATCTTGCCCTTTCTTTGTTTTCGCGCGATATAAAT
TTTTTCAAAATCTGCCGATGGATTTTACTTTAAATCTGGTGTTTGTGTGA
AAACCAGACAAGTCACGTTTTGGGATGGAAAAAAGTGGCTTCATTTCCTA
TCCAAGAGTTTCAAATCTCTAGCTTCTTCGGGGCTTGCTTATTTAATCAA
CGGTCAGGGAGAGTATACTTAGAATTTGGGAAGAGTAATATCCGCTTATC
CAGGCTTATCACCGAAAATCCTCAGCTTTTCTGGTACTGGTCTTTGTTTT
GAATATTATTTCTTAGACTCCGAAGATCCTGGGTTTTTTATGAATTTTTT
ATGCACTAAACTAGAGTCTATTCCTGACTGAATTTTGGTGTCTTATAATT
ATCCAGTGAAGTAGACTAGAAAAGCACTTGACAAGGTTACTTTTGGAAGA
AAATACCAAAATTCCTTTTTCTGGTATTTGGGATTTGGATGTTTTTCTTT
CAAAATGGCCTTGTCAAGTGCTTTTCTATGCTCCTAGTCTACTTCACTGA
ACTCGGTCTAATCAAAAATTGTCAAAAAGCAAAATTCAACCTGACGTAGA
CTCTAGCCTGTTGGACCCCGGGCTATTTGTCAGGCTATTTGTGCATTTGT
ACATGTTTGCCTTATAGATACGAAGACTCCATTGAGATTTCCAACAAAAC
CAAAAGGATTGTTGGATTGCCCAGATGTTTATGACCCTGTGTGCGGTTCT
GATGACGAAACTTACTCCAATCAATGTGTCTTCGATAAACAGAATTATAT
CTTTGCTGGGAAGCTCAGTGTCAAATGGCATGGGTACTGTCGATGTAAGA
AATCTTTAAACAAAACTCGTCTTAAATTATTCAAAAGCCAATGCTTAAAA
CTTCCTATGAAAATAGAAAATTAGACATGGCTCGCTCGTTTTGAAAACTT
AGGCCTTTACATTGCTGGAAAATGGACAAAAAATTAATGAACTCAAGCAA
AATAATATTATACAGTAATGAATATTTTGAATAGTCGTCTTTAAGAAACC
GTTAGGGGTGCAACCCCCCCCCCTAGTTGCTACGGCACTACAGTATAAAA
TGTTTTCAGAGCTTACTGTATAATTTCTTTCACAAATTTTGGCAACATTT
GGATGCTCGTGTGGGTGAATAAGCACAATATAAAATGTTATTTCTCTTTC
AATTGACTTAGCTGTTTATTCTGTGGTTGTGGGTTTGGAAGAAGAATTTC
AACTGGTTTGCGCTTCTGATGGAAACACATATTCAAGTTTGGTCGCCGTT
CAAATAGCAAAGTGTCAAAATTACAGACTAAGAGTTGTTAGTCACGGACC
ATGCAAAGAAAGGTATATATTGTTGGACCTACCTTGAAGTCCTATAAATT
AATCTTTGTTCGTTCGGTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTT
CGTTCGTTCGTTCGTTCGTTCGATATGAGCTTTTCTCCAAATTGGCTCAT
TCAATTTTTCTGATATTTTGATTCAAAATGGTAAACCCTCGATTGTGACG
GAACCCGATTTTCGAATAAAAAATATTTTTGGATAAATTTGAGCCAAAAA
ATGGCTAAAAATGGGGGTTTTGGATCATTAAACTTTTCTCTTTTTTTTGC
ATGAAAATAGGGTACCATCATAGGTGAAAGTTGGCTCAAGCTGATTTTCG
TAAAATAATTTTTTTGGCTCAAAAAGCGAATCTTTATCTATAAGAATCAC
CATTTATAAGCATAGATCAATGTTTTTAGCCAAATTGTTATTTCTATTAT
TATTTATTTTTTTTAAGAAGAAAATGTCACGGTGAAATGTGATGGTTTGA
GTTTTCTCAACGACTTTGGTTTTCTACAGACTTATTATTAAGCTGTGTAT
CTTTTAGACTATCAAGCGTCTTCCTTTCCTTGGAGACAGGAACGCGGGGA
ATGGTGCTTATAAAGAGCTTTTATGAAAAAATAGCAATTGCTGCTGGAGA
GTGGTTTGGAAAGACAGACTAGTTTCAAACGGTGCAATACGGGATTTAAC
TTCAAACTAATCTCAGGCAACGCTCCCTCGAAAAAGAGGGAAGATAAAAT
GAATGGATACCGCTTATTTTTTCTTCCATTCCTCTGTGAAAGTCTTAAAA
ATTATAGTTTGAAAATTTACGAAATTTCTGATTGGATTTTTGCCAATTTA
AAAAAAAATTGGAGGTCAATATGAAAAAGTACATATCATTTTAGGGAGTT
GTCAGAAAGTATCTACTAGTGTGGGGTGGAGGATATTTTCTAAAAATTCA
AAAAAAATTCGCACCCCCCCCCCTTGATACCCTCAAAAAACATTTCAAGT
CTCCCCTAACCAGTCAATATATTTTTGGTACCCCCTCCTATAGGCCACTT
AAAATGTTCTTGGACATCCCAAAACGGATGATTTGAAGCTACCATAATAG
CAGCTGCCAGAGGCGTAGCCACGAGTTTCTGTTCGTTGGAGGGGGGAAAC
AATTCGTAGGCGAAAAGTTTTACTCTAAGCAAGCTCAAATAGCTTTATAA
AGACCTTGAAAACGTCAAAGTAGTGAAAATAAGCTCACAAAAAGTGCAGA
AAGCATGAAATTTCATGTAAGTTTTCTTTATAATTTTGGCGCAGTAGGTG
AAAATTTTGGTCTAGGAAAATTCAAACAGCTCAAAGGTGGCCTTAAAAAG
GTCAATGGTAGACAAGGAACATTTGAAATCTATACTAATGAACAAAAAAT
TGGAAACATCCCCTAAAGACATCATCATCATCATTGCTCGACCGCAGTCG
AGACAAAGACATAACCCCTCCCCCACTAAATGGGGATCCTCCATCCCCCT
AGTAGGTACTTTTTGACCACTCCTTTATAATGCTATGGCAGTCACCTTTT
ATATTTTTGATGCCGTTTTTCTAAAAAATATTTATCTTTTATTTTGAAAA
CGATTTTTCCCTTTATATAAAGGGACATTACAGTAGTAAAATGTAAACAT
TGCGCGAACCACGTGTCATTAAAAAGAACAATTAAAATCACGTGTCCAAA
ACAAACTTGTAAAACAATTGAACAATCAAAATTAGCCATATTTGGTTTGA
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATATTTGGTTTGAT
TTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCGCTGCATAC
AGTTTGTTTACAAATTTCGCAAGTACTGTTATGTCCCTTATATAAATACT
TTGCTTTTGGAGTAGCTGGTAGGTACAGTTCAGTTCATATTCTTTTCATT
CAGACAAAAAAAATCATATTTTTTTAACTCTTTGTCTTGTTGTTGGTGAA
TTGATGCATGATTTCTGGAAGAAAGAACTTTCGAATTATAAGTCCAAATA
TTTCACTATAATAAAAGAAAAAGTCTTTGAATTTAGTAAGAATTTTTGTT
ATGGATCTCATTTTACAAAATCAAAATTCTTTTACATTTCTAGGGAGTAG
TCATTCATGACAGGAAGAAGATGAACATCACAAACTTCGTGAGATCGATC
AAGCAAATTTATATAATCAACGTCGTGAATGTAAGAGGATATAGCCTTTC
CCCACTGGGAATTTAACAATCTATTATATTTCTTTCATATACTTTTTTGA
CCGAATCGATTTGTTATATTATAAGTTTTGGCAAGTTCCACATAGCTGTA
ATACTATAACAAGCATAATTTGANGTATATTTGTAAGTTTTGGCAAGTTC
CACATAGCTGCAATACTATAACAAGCATAATTTGAAATTTTCGTATTTAA
ATTTTCAATGAAATTGGAATTATGTACTTTTTTAACATTTTGAAATATTC
AAATAGAAAATCCGGATTGAGATTGAAACACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039495XLOC_039495Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063048-exon-scaffold_378-1575043694:17078..17531TCONS_00063048-exon-scaffold_378-1575043694:17078..17531Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1575043694:16506..16628TCONS_00063048-exon-scaffold_378-1575043694:16506..16628Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1575043694:16164..16304TCONS_00063048-exon-scaffold_378-1575043694:16164..16304Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1575043694:15641..15784TCONS_00063048-exon-scaffold_378-1575043694:15641..15784Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1575043694:14688..14864TCONS_00063048-exon-scaffold_378-1575043694:14688..14864Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1575043694:14170..14320TCONS_00063048-exon-scaffold_378-1575043694:14170..14320Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1575043694:11791..11988TCONS_00063048-exon-scaffold_378-1575043694:11791..11988Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1575043694:11599..11728TCONS_00063048-exon-scaffold_378-1575043694:11599..11728Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1510915933:17078..17531TCONS_00063048-exon-scaffold_378-1510915933:17078..17531Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1510915933:16506..16628TCONS_00063048-exon-scaffold_378-1510915933:16506..16628Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1510915933:16164..16304TCONS_00063048-exon-scaffold_378-1510915933:16164..16304Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1510915933:15641..15784TCONS_00063048-exon-scaffold_378-1510915933:15641..15784Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1510915933:14688..14864TCONS_00063048-exon-scaffold_378-1510915933:14688..14864Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1510915933:14170..14320TCONS_00063048-exon-scaffold_378-1510915933:14170..14320Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1510915933:11791..11988TCONS_00063048-exon-scaffold_378-1510915933:11791..11988Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1510915933:11599..11728TCONS_00063048-exon-scaffold_378-1510915933:11599..11728Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1491911889:17078..17531TCONS_00063048-exon-scaffold_378-1491911889:17078..17531Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1491911889:16506..16628TCONS_00063048-exon-scaffold_378-1491911889:16506..16628Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1491911889:16164..16304TCONS_00063048-exon-scaffold_378-1491911889:16164..16304Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1491911889:15641..15784TCONS_00063048-exon-scaffold_378-1491911889:15641..15784Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1491911889:14688..14864TCONS_00063048-exon-scaffold_378-1491911889:14688..14864Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1491911889:14170..14320TCONS_00063048-exon-scaffold_378-1491911889:14170..14320Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1491911889:11791..11988TCONS_00063048-exon-scaffold_378-1491911889:11791..11988Clytia hemisphaericaexon
TCONS_00063048-exon-scaffold_378-1491911889:11599..11728TCONS_00063048-exon-scaffold_378-1491911889:11599..11728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_378supercontigscaffold_378:11599..17531 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.315358	0.307523	0	0	0	0	0.202721	0	0.182713	0.11316	0	0.105013	0.209735	0	0.0895353	0.0960851	0.591845	0.242649	0	0	0	0.446167	0.542374	0	0.169293	0	0	0.118986	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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