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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063075 ID=TCONS_00063075|Name=TCONS_00063075|organism=Clytia hemisphaerica|type=transcript|length=1426bp
TTAGCACCTAAACAAACAAATAGCAAAAAAACCGCAAGAACAATAAACAG
AAGATGTCGAATAACAATGGCACTACCGTTTCAAGTCAAGCTCAGAAAGA
TTTACTCAAGATTCTGGAAATACGAAACTCCATATGGAACTACATTCAAA
CTCCAATGCTCAGCTTTGGAGTCCTTGGCAATCTGATcatcattatatat
tttttaaacttgaatTGGAACAAGATAAAAAAGATGAGCTCGTACCATTT
CCTACTTATCAATTTAGCTTTGTCTGACACCCTAGCTTGCGGCGGCACCG
CCTTCTTGCTCCACTATTTTATGAAACCTGCTTGGGAGCTTGGAAGATTT
GGATGTATCTTTGTAATGAATGTCTTCATTAATATTTGTCCCATGGCTTC
TTGCTTGTTGTTAATCGCAACCTCCTATGCTCGATACCGCCGTATCGTCA
CACCCTTCAAACGGAGGTTGAACAAAAAACAATACAGTATTGTTTGTTTG
TTCATTTGGATTTTATCTTCGCTTACTTATTTACATTATTTTATGAACAG
GAAGGTCGTCGAAATTGACGGTAATCTGCAATGCAGGTATTTCGGAGAAG
AGTTCGCAAATCAATCCTACGGATTTGTCTGGGACATCTTCATAGCAGTT
ACTGTAATGgtttatttttacatcaaaatcaAGCAAAGACTTGATCACGC
GGATATTTCCAGCCAATTCGCTTCAAATGATGCAAGCAGGCAAAGAAATA
GGCTTGTTTTAAGGACCTTGAAAGCCCTCATAGTTGTCTATGTCATATTT
GCATATCCAGGAAGAATCTTTGCACTCATTGGGAACGCGCTTTTCTACTA
TGGTTCAAAAGAGAATCCTCCAAACCAAGATTTAATGAACGCTGGCATAT
CTCTGGTTCATATCATTGCAATGTTTCTGTATTTCTCTAACAATATTGTT
AATGTGTTTgtatatttcaaattgatgcCAGAATTTCGAAGTTTTGTGTT
GACAATTATGACTTTGGGAATTTACAAGAAGAAAGGAACGAGTAAGAACA
AACCAGAGAAATGAGATGGGCTTGACTGGGATGCTATACAGGACTAATAA
GATACGATATTCTAACATGTATATTTACTTGGATAGCAAAGTATAGGACT
TTTAGATGGTCTTGTTATTATTtccacggggtccacggccagccggtccg
gctattttttatttgaagaacagaacattggaaggagtgAGATTCGAACC
GGGAACCCTTATTTTAAGGTGCTGTTGCCTTGACAACTCATCCACATTTA
TCTAAATTAATTAACTTTTTCTCTTATGATATATATTTACTGTCTctcat
ttttgtaatttcgCTTCAGACCTAATCACTAAAAGGATTAcctgataaat
attttttataaattgaTAAATAAATC Run BLAST on NCBI protein sequence of TCONS_00063075-protein >TCONS_00063075-protein ID=TCONS_00063075-protein|Name=TCONS_00063075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MSNNNGTTVSSQAQKDLLKILEIRNSIWNYIQTPMLSFGVLGNLIIIIYF
LNLNWNKIKKMSSYHFLLINLALSDTLACGGTAFLLHYFMKPAWELGRFG
CIFVMNVFINICPMASCLLLIATSYARYRRIVTPFKRRLNKKQYSIVCLF
IWILSSLTYLHYFMNRKVVEIDGNLQCRYFGEEFANQSYGFVWDIFIAVT
VMVYFYIKIKQRLDHADISSQFASNDASRQRNRLVLRTLKALIVVYVIFA
YPGRIFALIGNALFYYGSKENPPNQDLMNAGISLVHIIAMFLYFSNNIVN
VFVYFKLMPEFRSFVLTIMTLGIYKKKGTSKNKPEK Run BLAST on NCBI transcript from alignment at scaffold_379:43394..44819 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063075 ID=TCONS_00063075|Name=TCONS_00063075|organism=Clytia hemisphaerica|type=transcript|length=1426bp|location=Sequence derived from alignment at scaffold_379:43394..44819 (Clytia hemisphaerica)
GATTTATTTAtcaatttataaaaaatatttatcaggTAATCCTTTTAGTG
ATTAGGTCTGAAGcgaaattacaaaaatgagAGACAGTAAATATATATCA
TAAGAGAAAAAGTTAATTAATTTAGATAAATGTGGATGAGTTGTCAAGGC
AACAGCACCTTAAAATAAGGGTTCCCGGTTCGAATCTcactccttccaat
gttctgttcttcaaataaaaaatagccggaccggctggccgtggaccccg
tggaAATAATAACAAGACCATCTAAAAGTCCTATACTTTGCTATCCAAGT
AAATATACATGTTAGAATATCGTATCTTATTAGTCCTGTATAGCATCCCA
GTCAAGCCCATCTCATTTCTCTGGTTTGTTCTTACTCGTTCCTTTCTTCT
TGTAAATTCCCAAAGTCATAATTGTCAACACAAAACTTCGAAATTCTGgc
atcaatttgaaatatacAAACACATTAACAATATTGTTAGAGAAATACAG
AAACATTGCAATGATATGAACCAGAGATATGCCAGCGTTCATTAAATCTT
GGTTTGGAGGATTCTCTTTTGAACCATAGTAGAAAAGCGCGTTCCCAATG
AGTGCAAAGATTCTTCCTGGATATGCAAATATGACATAGACAACTATGAG
GGCTTTCAAGGTCCTTAAAACAAGCCTATTTCTTTGCCTGCTTGCATCAT
TTGAAGCGAATTGGCTGGAAATATCCGCGTGATCAAGTCTTTGCTtgatt
ttgatgtaaaaataaacCATTACAGTAACTGCTATGAAGATGTCCCAGAC
AAATCCGTAGGATTGATTTGCGAACTCTTCTCCGAAATACCTGCATTGCA
GATTACCGTCAATTTCGACGACCTTCCTGTTCATAAAATAATGTAAATAA
GTAAGCGAAGATAAAATCCAAATGAACAAACAAACAATACTGTATTGTTT
TTTGTTCAACCTCCGTTTGAAGGGTGTGACGATACGGCGGTATCGAGCAT
AGGAGGTTGCGATTAACAACAAGCAAGAAGCCATGGGACAAATATTAATG
AAGACATTCATTACAAAGATACATCCAAATCTTCCAAGCTCCCAAGCAGG
TTTCATAAAATAGTGGAGCAAGAAGGCGGTGCCGCCGCAAGCTAGGGTGT
CAGACAAAGCTAAATTGATAAGTAGGAAATGGTACGAGCTCATCTTTTTT
ATCTTGTTCCAattcaagtttaaaaaatatataatgatgATCAGATTGCC
AAGGACTCCAAAGCTGAGCATTGGAGTTTGAATGTAGTTCCATATGGAGT
TTCGTATTTCCAGAATCTTGAGTAAATCTTTCTGAGCTTGACTTGAAACG
GTAGTGCCATTGTTATTCGACATCTTCTGTTTATTGTTCTTGCGGTTTTT
TTGCTATTTGTTTGTTTAGGTGCTAA Coding sequence (CDS) from alignment at scaffold_379:43394..44819 >TCONS_00063075 ID=TCONS_00063075|Name=TCONS_00063075|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_379:43394..44819 (Clytia hemisphaerica)
TCATTTCTCTGGTTTGTTCTTACTCGTTCCTTTCTTCTTGTAAATTCCCA
AAGTCATAATTGTCAACACAAAACTTCGAAATTCTGgcatcaatttgaaa
tatacAAACACATTAACAATATTGTTAGAGAAATACAGAAACATTGCAAT
GATATGAACCAGAGATATGCCAGCGTTCATTAAATCTTGGTTTGGAGGAT
TCTCTTTTGAACCATAGTAGAAAAGCGCGTTCCCAATGAGTGCAAAGATT
CTTCCTGGATATGCAAATATGACATAGACAACTATGAGGGCTTTCAAGGT
CCTTAAAACAAGCCTATTTCTTTGCCTGCTTGCATCATTTGAAGCGAATT
GGCTGGAAATATCCGCGTGATCAAGTCTTTGCTtgattttgatgtaaaaa
taaacCATTACAGTAACTGCTATGAAGATGTCCCAGACAAATCCGTAGGA
TTGATTTGCGAACTCTTCTCCGAAATACCTGCATTGCAGATTACCGTCAA
TTTCGACGACCTTCCTGTTCATAAAATAATGTAAATAAGTAAGCGAAGAT
AAAATCCAAATGAACAAACAAACAATACTGTATTGTTTTTTGTTCAACCT
CCGTTTGAAGGGTGTGACGATACGGCGGTATCGAGCATAGGAGGTTGCGA
TTAACAACAAGCAAGAAGCCATGGGACAAATATTAATGAAGACATTCATT
ACAAAGATACATCCAAATCTTCCAAGCTCCCAAGCAGGTTTCATAAAATA
GTGGAGCAAGAAGGCGGTGCCGCCGCAAGCTAGGGTGTCAGACAAAGCTA
AATTGATAAGTAGGAAATGGTACGAGCTCATCTTTTTTATCTTGTTCCAa
ttcaagtttaaaaaatatataatgatgATCAGATTGCCAAGGACTCCAAA
GCTGAGCATTGGAGTTTGAATGTAGTTCCATATGGAGTTTCGTATTTCCA
GAATCTTGAGTAAATCTTTCTGAGCTTGACTTGAAACGGTAGTGCCATTG
TTATTCGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063075-exon-scaffold_379-1491911889:43394..44819 | TCONS_00063075-exon-scaffold_379-1491911889:43394..44819 | Clytia hemisphaerica | exon |
| TCONS_00063075-exon-scaffold_379-1510915933:43394..44819 | TCONS_00063075-exon-scaffold_379-1510915933:43394..44819 | Clytia hemisphaerica | exon |
| TCONS_00063075-exon-scaffold_379-1575043694:43394..44819 | TCONS_00063075-exon-scaffold_379-1575043694:43394..44819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_379 | supercontig | scaffold_379:43394..44819 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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