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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063084 ID=TCONS_00063084|Name=TCONS_00063084|organism=Clytia hemisphaerica|type=transcript|length=1565bp
aggaaataaaaaaagcaaTGACTTCAACTTACAACAAGATCTTATACCAG
TATGTGACAACTTCCATCGGTGCTTTGGTCATCGCCTCAAACTCCATCAT
GCTTGTTTGCATTCGACGTTCAAAAGCACACAAAAATAAACCGGTCGGTT
TTGTTTACGTCATCAATATGGCAGCGTCTGATTTGTTTGTTGGGGTAACT
ATGGTGATTCTAAAATCCATGCACCCTTACATGGGAACAACACTAGCTGA
AAATGTTGTGGCGCAAAACATATATCACGTGGTTAGATTTTGCATGATTC
GATTTTCACTTCTCGTCTCCGTTTTTAACTTAGTGGCACTGACCATAGAT
CGCCTATGCGCGATCCGCTTTCCATTCTTGGTCCAACGTCAAGATAAAGG
ATTTCACATCAAAGTCTGTGGCCTTATATGGTTCGTATCACTTGTTATCA
CTTCCATTTTTTACATTCTGGCaagattttatttaaaagacaGTTTACGA
TACAAAGACGCTATCTTCCCTATCGCGACGATTCCGGCAACTGTGTTGTT
TGTTGTGAGTTATACGATGATTTTTACCGTCGTTCGTCGTACGTCAAATA
CCGTCAACAGAATTGAAGCATCCGTTAGGAGACGCAGGATTGATACCGAA
GGGGCTGGGGAGAATAATGAAGAAAGACGCCcggaagaaaaagaaaagat
tGCATTTGTGCGGCTTGCAGTGAAAACAGTGGCTGTTTTCGTTATATGTT
GGCTACCTCTGTCAATCACTTCCATCTACAAATTACTCAGCACAGAGGCA
CCAGACAGAGACCTCGAATCGAGTTTCTTCACATTAGCCTTTTTCAATTC
TCTCATTGACCCATTCATCTATTTCGCACATTTAAGACGTGTCATTATCA
GAGTTGTGCGTCGTATCATGGGTCTGAATACTGAAATGATCATTCAACCA
CAAAGCTCTGAGAGATCTGGCAATTCTCGAAGAGAATCATCAATCAAGTT
ATCAACAGTGTACACGACTCCTCAAAACAGGACGAACCCAGATGTTATCA
TTTCTGCATCTAAGACAGACACAGGGGTTGTTAATTTGGGTTATGATGAA
GAACATTCATTGAATTCTCCAGACTGTAGCAACAGTGGATGGACGAATTT
GAAACCACCAAGTGAGCGATTGAGTGTTGACGTATTGGTACATCAACTGC
CAAGAAGTCTGGAGCCTGCATAATGttttcaaacaaacgaacGCTTCCCT
CTAACAAGATTTGCCATTGATTTGTTGAGTCGAAATTCAGCAGAAAGCAA
CTGTGACAAACGCTTTGAAAAAAGTCGATGATAAAGCATTCACGACGAAG
GGATAGAACACTCGTATTTTCAAGACGAATGCTTTACGTACCTGCTCCAA
GCATTTGTACGGCTACAATTCAAAATACGAAGTATAAACACTCAGAAAAC
TAGTGCTTCTTGTCATTTTAACCTTTGACGATTAATATAATGATATAAAT
TCATGAGCATATTGTAGCTTCAGTTACtaagttaaagttttttttcaaac
tatcaacaataaaat Run BLAST on NCBI protein sequence of TCONS_00063084-protein >TCONS_00063084-protein ID=TCONS_00063084-protein|Name=TCONS_00063084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
EIKKAMTSTYNKILYQYVTTSIGALVIASNSIMLVCIRRSKAHKNKPVGF
VYVINMAASDLFVGVTMVILKSMHPYMGTTLAENVVAQNIYHVVRFCMIR
FSLLVSVFNLVALTIDRLCAIRFPFLVQRQDKGFHIKVCGLIWFVSLVIT
SIFYILARFYLKDSLRYKDAIFPIATIPATVLFVVSYTMIFTVVRRTSNT
VNRIEASVRRRRIDTEGAGENNEERRPEEKEKIAFVRLAVKTVAVFVICW
LPLSITSIYKLLSTEAPDRDLESSFFTLAFFNSLIDPFIYFAHLRRVIIR
VVRRIMGLNTEMIIQPQSSERSGNSRRESSIKLSTVYTTPQNRTNPDVII
SASKTDTGVVNLGYDEEHSLNSPDCSNSGWTNLKPPSERLSVDVLVHQLP
RSLEPA Run BLAST on NCBI transcript from alignment at scaffold_38:130807..133380+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063084 ID=TCONS_00063084|Name=TCONS_00063084|organism=Clytia hemisphaerica|type=transcript|length=2574bp|location=Sequence derived from alignment at scaffold_38:130807..133380+ (Clytia hemisphaerica)
aggaaataaaaaaagcaaTGACTTCAACTTACAACAAGATCTTATACCAG
TATGTGACAACTTCCATCGGTGCTTTGGTCATCGCCTCAAACTCCATCAT
GCTTGTTTGCATTCGACGTTCAAAAGCACACAAAAATAAACCGGTCGGTT
TTGTTTACGTCATCAATATGGCAGCGTCTGATTTGTTTGTTGGGGTAACT
ATGGTGATTCTAAAATCCATGCACCCTTACATGGGAACAACACTAGCTGA
AAATGTTGTGGCGCAAAACATATATCACGTGGTTAGATTTTGCATGATTC
GATTTTCACTTCTCGTCTCCGTTTTTAACTTAGTGGCACTGACCATAGAT
CGCCTATGCGCGATCCGCTTTCCATTCTTGGTCCAACGTCAAGATAAAGG
ATTTCACATCAAAGTCTGTGGCCTTATATGGTTCGTATCACTTGTTATCA
CTTCCATTTTTTACATTCTGGCaagattttatttaaaagacaGTTTACGA
TACAAAGACGCTATCTTCCCTATCGCGACGATTCCGGCAACTGTGTTGTT
TGTTGTGAGTTATACGATGATTTTTACCGTCGTTCGTCGTACGTCAAATA
CCGTCAACAGAATTGAAGCATCCGTTAGGAGACGCAGGATTGATACCGAA
GGGGCTGGGGAGAATAATGAAGAAAGACGCCcggaagaaaaagaaaaggt
gAATGTCTATACTTTATACTGTAGATAGAAAGATATGAGCCCCCTCcccc
gaatgcattcgggatgggtcctacccacgaaggagtaggaatcacggcac
cgacagacactgcgacttgacagaAGCGATCTGCCAAGCCATGCCGTATA
CTTTATACTGTATGGTTGAATAAATCAAAATTCTAGGGCTAAGGGTTTGT
GATTGAAAATCTTGATCTTGTACAATCGTTGTTAATTTATATTTCTAGTG
GTTAAAGTTAGAATATGCCGATAACATCAGCCCCTCccaaaaatgttgaa
gctgACGGGAAAAAAGCCTGTGGGGAGAAGGGAAAGACTTTCAAAGCACT
GTTCCATGCATGAGTATTGGTAACGATTATAGCagtaaaatgttttaatt
ttcaattttagattGCATTTGTGCGGCTTGCAGTGAAAACAGTGGCTGTT
TTCGTTATATGTTGGCTACCTCTGTCAATCACTTCCATCTACAAATTACT
CAGCACAGAGGCACCAGACAGAGACCTCGAATCGAGTTTCTTCACATTAG
CCTTTTTCAATTCTCTCATTGACCCATTCATCTATTTCGCACATTTAAGA
CGTGTCATTATCAGAGTTGTGCGTCGTATCATGGGTCTGAATACTGAAAT
GATCATTCAACCACAAAGCTCTGAGAGATCTGGCAATTCTCGAAGAGAAT
CATCAATCAAGTTATCAACAGTGTACACGACTCCTCAAAACAGGACGAAC
CCAGATGTTATCATTTCTGCATCTAAGACAGACACAGGGGTTGTTAATTT
GGGTTATGATGAAGAACATTCATTGAATTCTCCAGACTGTAGCAACAGTG
GATGGACGAATTTGAAACCACCAAGTGAGCGATTGAGTGTTGACGTATTG
GTACATCAACTGCCAAGAAGTCTGGAGCCTGCATAATGGTTAGGCCTTTT
TGCATTTGAGCAAGAGTCCTAGTTAGGTCATCACATTTTTATCGTGCCcc
cactcgatttctaaacgacggcatgaactgccaaaaaattgattcctaaa
ttggacccttacagtgcagctcttaaacagtgaaaaggtacccttaccct
tacagtgcattttactaAACGTTTCTCTTTCTTACAATGTAGTTATTGAT
tccatatcttattttgctgatgCCACccagaccagcttggagcccAGCCC
CGTTGGAAAAATTGACAGAAATTTCAGCCGCCCTCTTGGAAataaacttt
tatttcatcccattcaaaattccatatttaaaaattgcacttcaaaacca
ttgccactgaattttttaaacttggaacaaaggaatttctatccccatta
ggatttcaataggaatttttatccccgctgagaaaaaagttccactgggg
ctgtgagggGTGTTTAAgatgtcgaaaaaaaaaatgatccaACTGtctaa
catttttttaagttttcaaacaaacgaacGCTNGTTTAAgatgtcgaaaa
aaaaaatgatccaACTGTCtaacattttttaaagttttcaaacaaacgaa
cGCTTCCCTCTAACAAGATTTGCCATTGATTTGTTGAGTCGAAATTCAGC
AGAAAGCAACTGTGACAAACGCTTTGAAAAAAGTCGATGATAAAGCATTC
ACGACGAAGGGATAGAACACTCGTATTTTCAAGACGAATGCTTTACGTAC
CTGCTCCAAGCATTTGTACGGCTACAATTCAAAATACGAAGTATAAACAC
TCAGAAAACTAGTGCTTCTTGTCATTTTAACCTTTGACGATTAATATAAT
GATATAAATTCATGAGCATATTGTAGCTTCAGTTACtaagttaaagtttt
ttttcaaactatcaacaataaaat Coding sequence (CDS) from alignment at scaffold_38:130807..133380+ >TCONS_00063084 ID=TCONS_00063084|Name=TCONS_00063084|organism=Clytia hemisphaerica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_38:130807..133380+ (Clytia hemisphaerica)
gaaataaaaaaagcaaTGACTTCAACTTACAACAAGATCTTATACCAGTA
TGTGACAACTTCCATCGGTGCTTTGGTCATCGCCTCAAACTCCATCATGC
TTGTTTGCATTCGACGTTCAAAAGCACACAAAAATAAACCGGTCGGTTTT
GTTTACGTCATCAATATGGCAGCGTCTGATTTGTTTGTTGGGGTAACTAT
GGTGATTCTAAAATCCATGCACCCTTACATGGGAACAACACTAGCTGAAA
ATGTTGTGGCGCAAAACATATATCACGTGGTTAGATTTTGCATGATTCGA
TTTTCACTTCTCGTCTCCGTTTTTAACTTAGTGGCACTGACCATAGATCG
CCTATGCGCGATCCGCTTTCCATTCTTGGTCCAACGTCAAGATAAAGGAT
TTCACATCAAAGTCTGTGGCCTTATATGGTTCGTATCACTTGTTATCACT
TCCATTTTTTACATTCTGGCaagattttatttaaaagacaGTTTACGATA
CAAAGACGCTATCTTCCCTATCGCGACGATTCCGGCAACTGTGTTGTTTG
TTGTGAGTTATACGATGATTTTTACCGTCGTTCGTCGTACGTCAAATACC
GTCAACAGAATTGAAGCATCCGTTAGGAGACGCAGGATTGATACCGAAGG
GGCTGGGGAGAATAATGAAGAAAGACGCCcggaagaaaaagaaaagattG
CATTTGTGCGGCTTGCAGTGAAAACAGTGGCTGTTTTCGTTATATGTTGG
CTACCTCTGTCAATCACTTCCATCTACAAATTACTCAGCACAGAGGCACC
AGACAGAGACCTCGAATCGAGTTTCTTCACATTAGCCTTTTTCAATTCTC
TCATTGACCCATTCATCTATTTCGCACATTTAAGACGTGTCATTATCAGA
GTTGTGCGTCGTATCATGGGTCTGAATACTGAAATGATCATTCAACCACA
AAGCTCTGAGAGATCTGGCAATTCTCGAAGAGAATCATCAATCAAGTTAT
CAACAGTGTACACGACTCCTCAAAACAGGACGAACCCAGATGTTATCATT
TCTGCATCTAAGACAGACACAGGGGTTGTTAATTTGGGTTATGATGAAGA
ACATTCATTGAATTCTCCAGACTGTAGCAACAGTGGATGGACGAATTTGA
AACCACCAAGTGAGCGATTGAGTGTTGACGTATTGGTACATCAACTGCCA
AGAAGTCTGGAGCCTGCATAAgaaataaaaaaagcaaTGACTTCAACTTA
CAACAAGATCTTATACCAGTATGTGACAACTTCCATCGGTGCTTTGGTCA
TCGCCTCAAACTCCATCATGCTTGTTTGCATTCGACGTTCAAAAGCACAC
AAAAATAAACCGGTCGGTTTTGTTTACGTCATCAATATGGCAGCGTCTGA
TTTGTTTGTTGGGGTAACTATGGTGATTCTAAAATCCATGCACCCTTACA
TGGGAACAACACTAGCTGAAAATGTTGTGGCGCAAAACATATATCACGTG
GTTAGATTTTGCATGATTCGATTTTCACTTCTCGTCTCCGTTTTTAACTT
AGTGGCACTGACCATAGATCGCCTATGCGCGATCCGCTTTCCATTCTTGG
TCCAACGTCAAGATAAAGGATTTCACATCAAAGTCTGTGGCCTTATATGG
TTCGTATCACTTGTTATCACTTCCATTTTTTACATTCTGGCaagatttta
tttaaaagacaGTTTACGATACAAAGACGCTATCTTCCCTATCGCGACGA
TTCCGGCAACTGTGTTGTTTGTTGTGAGTTATACGATGATTTTTACCGTC
GTTCGTCGTACGTCAAATACCGTCAACAGAATTGAAGCATCCGTTAGGAG
ACGCAGGATTGATACCGAAGGGGCTGGGGAGAATAATGAAGAAAGACGCC
cggaagaaaaagaaaagattGCATTTGTGCGGCTTGCAGTGAAAACAGTG
GCTGTTTTCGTTATATGTTGGCTACCTCTGTCAATCACTTCCATCTACAA
ATTACTCAGCACAGAGGCACCAGACAGAGACCTCGAATCGAGTTTCTTCA
CATTAGCCTTTTTCAATTCTCTCATTGACCCATTCATCTATTTCGCACAT
TTAAGACGTGTCATTATCAGAGTTGTGCGTCGTATCATGGGTCTGAATAC
TGAAATGATCATTCAACCACAAAGCTCTGAGAGATCTGGCAATTCTCGAA
GAGAATCATCAATCAAGTTATCAACAGTGTACACGACTCCTCAAAACAGG
ACGAACCCAGATGTTATCATTTCTGCATCTAAGACAGACACAGGGGTTGT
TAATTTGGGTTATGATGAAGAACATTCATTGAATTCTCCAGACTGTAGCA
ACAGTGGATGGACGAATTTGAAACCACCAAGTGAGCGATTGAGTGTTGAC
GTATTGGTACATCAACTGCCAAGAAGTCTGGAGCCTGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063084-exon-scaffold_38-1491911889:130807..131504 | TCONS_00063084-exon-scaffold_38-1491911889:130807..131504 | Clytia hemisphaerica | exon |
| TCONS_00063084-exon-scaffold_38-1510915933:130807..131504 | TCONS_00063084-exon-scaffold_38-1510915933:130807..131504 | Clytia hemisphaerica | exon |
| TCONS_00063084-exon-scaffold_38-1575043694:130807..131504 | TCONS_00063084-exon-scaffold_38-1575043694:130807..131504 | Clytia hemisphaerica | exon |
| TCONS_00063084-exon-scaffold_38-1491911889:131918..132444 | TCONS_00063084-exon-scaffold_38-1491911889:131918..132444 | Clytia hemisphaerica | exon |
| TCONS_00063084-exon-scaffold_38-1510915933:131918..132444 | TCONS_00063084-exon-scaffold_38-1510915933:131918..132444 | Clytia hemisphaerica | exon |
| TCONS_00063084-exon-scaffold_38-1575043694:131918..132444 | TCONS_00063084-exon-scaffold_38-1575043694:131918..132444 | Clytia hemisphaerica | exon |
| TCONS_00063084-exon-scaffold_38-1491911889:133041..133380 | TCONS_00063084-exon-scaffold_38-1491911889:133041..133380 | Clytia hemisphaerica | exon |
| TCONS_00063084-exon-scaffold_38-1510915933:133041..133380 | TCONS_00063084-exon-scaffold_38-1510915933:133041..133380 | Clytia hemisphaerica | exon |
| TCONS_00063084-exon-scaffold_38-1575043694:133041..133380 | TCONS_00063084-exon-scaffold_38-1575043694:133041..133380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:130807..133380 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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