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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063101 ID=TCONS_00063101|Name=TCONS_00063101|organism=Clytia hemisphaerica|type=transcript|length=1009bp
aaaccagctgggtTTGTTTACATCATCAACATGGCGGTATCTGATTTGTT
TGTTGGAGTTGTTATGGTGATTCTCAAGTCAATGAATCCTTATATGCAAA
CATCTTTAGCTGACAATGTTGCGGCGCAAACTGCCTATCACGTAATGAAG
TTTTGCATGGTTCGTTTCACACTTTTGGTTTCAGTTTTCAATCTGGTTGC
GCTAACCATAGATCGTCTGTACGCCATAAGATTCCCGTTTGCCGCACAAA
GAATGGAGCGCCGTTTTCACATCAAAGTTTGTTGCGGAATCTGGTTTGTA
TCCCTTGTTATAACTTCAATTTTCTATATGCTTATTACATACAGCTTGAA
AGATAGTTTACGATACAAAGATGCTATCTTCCCTATCGCGACGATTCCAG
CAACGGTGTTGTTTTTTGTAAGTTACACAATGATTTTTACCGTCGTTCGA
CGTACGTCAAATACCGTCAAGACGATGAAAATATCGGTTAGAAGTAAAAA
TGGAACGAACAAAGAACTTCAACAATCAACACAAAGAAGCcgtgaagaaa
aagaaaagAGGGCATTTATACGGCTGGCAGTAAAGACTGTGGCTGTTTTC
GTTATATGTTGGTTACCTTTGTCAATCATTTCCATCTACAAATTAGTCAG
CACAGAAGCTCCGCATCCAAACCTTGAATCTACAGCATTTACATTGGCCC
TGTTCAATTCTCTCATCGACCCCTACGTATATTTTACACATTTTCAACGT
GCCATTAGGAAACTCTTTGGTTGCTGCATCAGAAACCGCACAGATCCATT
TCTGATCCAGGCATCAAGTAGTTTAAGCAATTCTACGAAGGTATAAACAT
CAATAGTATCTCGATTTCAGAATGATGTTGCGTAAAACAACgaaacagaa
acaaaaaaacgtaatatctgttatcatcaacatgaaaaataatctgattg
gctaaaaacgcatACATAAAtactgtatttcatattgtaccgtacaaata
caagaccgc Run BLAST on NCBI protein sequence of TCONS_00063101-protein >TCONS_00063101-protein ID=TCONS_00063101-protein|Name=TCONS_00063101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
KPAGFVYIINMAVSDLFVGVVMVILKSMNPYMQTSLADNVAAQTAYHVMK
FCMVRFTLLVSVFNLVALTIDRLYAIRFPFAAQRMERRFHIKVCCGIWFV
SLVITSIFYMLITYSLKDSLRYKDAIFPIATIPATVLFFVSYTMIFTVVR
RTSNTVKTMKISVRSKNGTNKELQQSTQRSREEKEKRAFIRLAVKTVAVF
VICWLPLSIISIYKLVSTEAPHPNLESTAFTLALFNSLIDPYVYFTHFQR
AIRKLFGCCIRNRTDPFLIQASSSLSNSTKV Run BLAST on NCBI transcript from alignment at scaffold_38:80424..81861- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063101 ID=TCONS_00063101|Name=TCONS_00063101|organism=Clytia hemisphaerica|type=transcript|length=1438bp|location=Sequence derived from alignment at scaffold_38:80424..81861- (Clytia hemisphaerica)
AAACCAGCTGGGTTTGTTTACATCATCAACATGGCGGTATCTGATTTGTT
TGTTGGAGTTGTTATGGTGATTCTCAAGTCAATGAATCCTTATATGCAAA
CATCTTTAGCTGACAATGTTGCGGCGCAAACTGCCTATCACGTAATGAAG
TTTTGCATGGTTCGTTTCACACTTTTGGTTTCAGTTTTCAATCTGGTTGC
GCTAACCATAGATCGTCTGTACGCCATAAGATTCCCGTTTGCCGCACAAA
GAATGGAGCGCCGTTTTCACATCAAAGTTTGTTGCGGAATCTGGTTTGTA
TCCCTTGTTATAACTTCAATTTTCTATATGCTTATTACATACAGCTTGAA
AGATAGTTTACGATACAAAGATGCTATCTTCCCTATCGCGACGATTCCAG
CAACGGTGTTGTTTTTTGTAAGTTACACAATGATTTTTACCGTCGTTCGA
CGTACGTCAAATACCGTCAAGACGATGAAAATATCGGTTAGAAGTAAAAA
TGGAACGAACAAAGAACTTCAACAATCAACACAAAGAAGCCGTGAAGAAA
AAGAAAAGGTGATTTTTTTTTCAATTGTTTTTGCAAATGTCACTCTTCAG
CCATACATACCGTGGGTTCATCGACTGTCGCTCCTAGTTTTTTCAGAATA
CCTTCAAATTGCTCGCTTGGGNCACCGTGGGTTAATCGACTGTCGCTCCT
AGTTTTTTCAAAATGCCTTCAAATTGCTCGCTGGGGTAAAATTGCTTTAT
TGTCCTCAATTTTCCTCATCTTTTTACAGGTAATTCTGCAAAAAAGAGAA
AGTAAAGGAAGGGCTGATGTTGATATTATTGATGTTACTCTTGCTATTTT
TTCAGTTTCACAGATTTGATACTAACCAAAAAAAGATTTTTACACTTCTA
AAAAAGAGCACTTTGCAACTATGTTTCACGTTTGATTGTCACATGATAAA
AAAGTATCTTTACAAATTAAATATCATCCTTTTTTAGAGGGCATTTATAC
GGCTGGCAGTAAAGACTGTGGCTGTTTTCGTTATATGTTGGTTACCTTTG
TCAATCATTTCCATCTACAAATTAGTCAGCACAGAAGCTCCGCATCCAAA
CCTTGAATCTACAGCATTTACATTGGCCCTGTTCAATTCTCTCATCGACC
CCTACGTATATTTTACACATTTTCAACGTGCCATTAGGAAACTCTTTGGT
TGCTGCATCAGAAACCGCACAGATCCATTTCTGATCCAGGCATCAAGTAG
TTTAAGCAATTCTACGAAGGTATAAACATCAATAGTATCTCGATTTCAGA
ATGATGTTGCGTAAAACAACGAAACAGAAACAAAAAAACGTAATATCTGT
TATCATCAACATGAAAAATAATCTGATTGGCTAAAAACGCATACATAAAT
ACTGTATTTCATATTGTACCGTACAAATACAAGACCGC Coding sequence (CDS) from alignment at scaffold_38:80424..81861- >TCONS_00063101 ID=TCONS_00063101|Name=TCONS_00063101|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_38:80424..81861- (Clytia hemisphaerica)
AGGGCATTTATACGGCTGGCAGTAAAGACTGTGGCTGTTTTCGTTATATG
TTGGTTACCTTTGTCAATCATTTCCATCTACAAATTAGTCAGCACAGAAG
CTCCGCATCCAAACCTTGAATCTACAGCATTTACATTGGCCCTGTTCAAT
TCTCTCATCGACCCCTACGTATATTTTACACATTTTCAACGTGCCATTAG
GAAACTCTTTGGTTGCTGCATCAGAAACCGCACAGATCCATTTCTGATCC
AGGCATCAAGTAGTTTAAGCAATTCTACGAAGGTATAAAAACCAGCTGGG
TTTGTTTACATCATCAACATGGCGGTATCTGATTTGTTTGTTGGAGTTGT
TATGGTGATTCTCAAGTCAATGAATCCTTATATGCAAACATCTTTAGCTG
ACAATGTTGCGGCGCAAACTGCCTATCACGTAATGAAGTTTTGCATGGTT
CGTTTCACACTTTTGGTTTCAGTTTTCAATCTGGTTGCGCTAACCATAGA
TCGTCTGTACGCCATAAGATTCCCGTTTGCCGCACAAAGAATGGAGCGCC
GTTTTCACATCAAAGTTTGTTGCGGAATCTGGTTTGTATCCCTTGTTATA
ACTTCAATTTTCTATATGCTTATTACATACAGCTTGAAAGATAGTTTACG
ATACAAAGATGCTATCTTCCCTATCGCGACGATTCCAGCAACGGTGTTGT
TTTTTGTAAGTTACACAATGATTTTTACCGTCGTTCGACGTACGTCAAAT
ACCGTCAAGACGATGAAAATATCGGTTAGAAGTAAAAATGGAACGAACAA
AGAACTTCAACAATCAACACAAAGAAGCCGTGAAGAAAAAGAAAAGAGGG
CATTTATACGGCTGGCAGTAAAGACTGTGGCTGTTTTCGTTATATGTTGG
TTACCTTTGTCAATCATTTCCATCTACAAATTAGTCAGCACAGAAGCTCC
GCATCCAAACCTTGAATCTACAGCATTTACATTGGCCCTGTTCAATTCTC
TCATCGACCCCTACGTATATTTTACACATTTTCAACGTGCCATTAGGAAA
CTCTTTGGTTGCTGCATCAGAAACCGCACAGATCCATTTCTGATCCAGGC
ATCAAGTAGTTTAAGCAATTCTACGAAGGTATAAAAACCAGCTGGGTTTG
TTTACATCATCAACATGGCGGTATCTGATTTGTTTGTTGGAGTTGTTATG
GTGATTCTCAAGTCAATGAATCCTTATATGCAAACATCTTTAGCTGACAA
TGTTGCGGCGCAAACTGCCTATCACGTAATGAAGTTTTGCATGGTTCGTT
TCACACTTTTGGTTTCAGTTTTCAATCTGGTTGCGCTAACCATAGATCGT
CTGTACGCCATAAGATTCCCGTTTGCCGCACAAAGAATGGAGCGCCGTTT
TCACATCAAAGTTTGTTGCGGAATCTGGTTTGTATCCCTTGTTATAACTT
CAATTTTCTATATGCTTATTACATACAGCTTGAAAGATAGTTTACGATAC
AAAGATGCTATCTTCCCTATCGCGACGATTCCAGCAACGGTGTTGTTTTT
TGTAAGTTACACAATGATTTTTACCGTCGTTCGACGTACGTCAAATACCG
TCAAGACGATGAAAATATCGGTTAGAAGTAAAAATGGAACGAACAAAGAA
CTTCAACAATCAACACAAAGAAGCCGTGAAGAAAAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063101-exon-scaffold_38-1575043694:81304..81861 | TCONS_00063101-exon-scaffold_38-1575043694:81304..81861 | Clytia hemisphaerica | exon |
| TCONS_00063101-exon-scaffold_38-1575043694:80424..80874 | TCONS_00063101-exon-scaffold_38-1575043694:80424..80874 | Clytia hemisphaerica | exon |
| TCONS_00063101-exon-scaffold_38-1510915933:81304..81861 | TCONS_00063101-exon-scaffold_38-1510915933:81304..81861 | Clytia hemisphaerica | exon |
| TCONS_00063101-exon-scaffold_38-1510915933:80424..80874 | TCONS_00063101-exon-scaffold_38-1510915933:80424..80874 | Clytia hemisphaerica | exon |
| TCONS_00063101-exon-scaffold_38-1491911889:81304..81861 | TCONS_00063101-exon-scaffold_38-1491911889:81304..81861 | Clytia hemisphaerica | exon |
| TCONS_00063101-exon-scaffold_38-1491911889:80424..80874 | TCONS_00063101-exon-scaffold_38-1491911889:80424..80874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:80424..81861 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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