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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063116 ID=TCONS_00063116|Name=TCONS_00063116|organism=Clytia hemisphaerica|type=transcript|length=1015bp
CGACAGAGTAGATCGTAAATCAAGCGCCAAAGTCAAACCATCAACATTAG
CGAACACTGGACAATACTTTGACTGGAGGATTAGAAAAGGGGAATATATT
ACCTTTTAACACGTTATTTAGCGTGGACACATTTTCATAAAAGGCTGACA
AACATTCCACAAATTCCATTGACGAAGGACCACTTCAAAAGCTGAAAAGG
CGTATAAATAGAGCTAAAAGCGACCACATCACAATCATATTCAAAAAGCA
CATCGAACAGACAACAACTCTTCAAGTACACTTTATAGAAGACGGGGAGA
AGACGATATTAAAAATGGCTTCATTCAAGGAATTGGTTTTTACAATTTGC
GTTTTATGCTGTATCTCATTATCAGAATGTCGACCTGCTGTTATCTCATT
GGGCAGAACCCACATTACGTCTAACACGATCACAACTTCGATTGGAGACA
AACTTGTAAAGAAAGCTCTACTTATACAAAACAGCAACAAACCAAACACA
ATAGATGTAGAAAGCCACCTGGTGACAGCGACTCAAAACCTAAAACCAGT
AGCCCCTAACACTGGACCTACGACCCAAAACATTGGCTCCCAATCAACGG
CGAACAATGAAGCGCCACAACCAGCACAACCAGGGAATGCTTTCATTGCA
AAGTTTTGCTACgaaagaattatcaaaacaacaaaaacagtaTGTTATCT
CACAAAGTGTTTCCCTGTAACACAGTCACGAAAAGTCTTAGAATGTTATG
GTGTATAATAGAAGAATTCCGTTTTTCAAATACATTGACGATTAAAATTT
GACTAGTCGTGTCATTAAATTCGACGACACTTAGgggattgtttttataa
actttATAGACTTTTAACTGGTAACTTATTTTGTATAGATATTTATTTGG
CGTAATATTTattaacttttaaattttttataataaactttgtgaaaata
tttaacgaAGCCTTACTTTGGAGAAGGTATATTTTTGAACAGGAAAACAC
ACAAGAATTGTGAAT Run BLAST on NCBI protein sequence of TCONS_00063116-protein >TCONS_00063116-protein ID=TCONS_00063116-protein|Name=TCONS_00063116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MASFKELVFTICVLCCISLSECRPAVISLGRTHITSNTITTSIGDKLVKK
ALLIQNSNKPNTIDVESHLVTATQNLKPVAPNTGPTTQNIGSQSTANNEA
PQPAQPGNAFIAKFCYERIIKTTKTVCYLTKCFPVTQSRKVLECYGV Run BLAST on NCBI transcript from alignment at scaffold_38:241436..242450 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063116 ID=TCONS_00063116|Name=TCONS_00063116|organism=Clytia hemisphaerica|type=transcript|length=1015bp|location=Sequence derived from alignment at scaffold_38:241436..242450 (Clytia hemisphaerica)
ATTCACAATTCTTGTGTGTTTTCCTGTTCAAAAATATACCTTCTCCAAAG
TAAGGCTtcgttaaatattttcacaaagtttattataaaaaatttaaaag
ttaatAAATATTACGCCAAATAAATATCTATACAAAATAAGTTACCAGTT
AAAAGTCTATaaagtttataaaaacaatcccCTAAGTGTCGTCGAATTTA
ATGACACGACTAGTCAAATTTTAATCGTCAATGTATTTGAAAAACGGAAT
TCTTCTATTATACACCATAACATTCTAAGACTTTTCGTGACTGTGTTACA
GGGAAACACTTTGTGAGATAACAtactgtttttgttgttttgataattct
ttcGTAGCAAAACTTTGCAATGAAAGCATTCCCTGGTTGTGCTGGTTGTG
GCGCTTCATTGTTCGCCGTTGATTGGGAGCCAATGTTTTGGGTCGTAGGT
CCAGTGTTAGGGGCTACTGGTTTTAGGTTTTGAGTCGCTGTCACCAGGTG
GCTTTCTACATCTATTGTGTTTGGTTTGTTGCTGTTTTGTATAAGTAGAG
CTTTCTTTACAAGTTTGTCTCCAATCGAAGTTGTGATCGTGTTAGACGTA
ATGTGGGTTCTGCCCAATGAGATAACAGCAGGTCGACATTCTGATAATGA
GATACAGCATAAAACGCAAATTGTAAAAACCAATTCCTTGAATGAAGCCA
TTTTTAATATCGTCTTCTCCCCGTCTTCTATAAAGTGTACTTGAAGAGTT
GTTGTCTGTTCGATGTGCTTTTTGAATATGATTGTGATGTGGTCGCTTTT
AGCTCTATTTATACGCCTTTTCAGCTTTTGAAGTGGTCCTTCGTCAATGG
AATTTGTGGAATGTTTGTCAGCCTTTTATGAAAATGTGTCCACGCTAAAT
AACGTGTTAAAAGGTAATATATTCCCCTTTTCTAATCCTCCAGTCAAAGT
ATTGTCCAGTGTTCGCTAATGTTGATGGTTTGACTTTGGCGCTTGATTTA
CGATCTACTCTGTCG Coding sequence (CDS) from alignment at scaffold_38:241436..242450 >TCONS_00063116 ID=TCONS_00063116|Name=TCONS_00063116|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_38:241436..242450 (Clytia hemisphaerica)
TTATACACCATAACATTCTAAGACTTTTCGTGACTGTGTTACAGGGAAAC
ACTTTGTGAGATAACAtactgtttttgttgttttgataattctttcGTAG
CAAAACTTTGCAATGAAAGCATTCCCTGGTTGTGCTGGTTGTGGCGCTTC
ATTGTTCGCCGTTGATTGGGAGCCAATGTTTTGGGTCGTAGGTCCAGTGT
TAGGGGCTACTGGTTTTAGGTTTTGAGTCGCTGTCACCAGGTGGCTTTCT
ACATCTATTGTGTTTGGTTTGTTGCTGTTTTGTATAAGTAGAGCTTTCTT
TACAAGTTTGTCTCCAATCGAAGTTGTGATCGTGTTAGACGTAATGTGGG
TTCTGCCCAATGAGATAACAGCAGGTCGACATTCTGATAATGAGATACAG
CATAAAACGCAAATTGTAAAAACCAATTCCTTGAATGAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063116-exon-scaffold_38-1491911889:241436..242450 | TCONS_00063116-exon-scaffold_38-1491911889:241436..242450 | Clytia hemisphaerica | exon |
| TCONS_00063116-exon-scaffold_38-1510915933:241436..242450 | TCONS_00063116-exon-scaffold_38-1510915933:241436..242450 | Clytia hemisphaerica | exon |
| TCONS_00063116-exon-scaffold_38-1575043694:241436..242450 | TCONS_00063116-exon-scaffold_38-1575043694:241436..242450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:241436..242450 . |
Blast
The following BLAST results are available for this feature:
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