TCONS_00063130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063130
Unique NameTCONS_00063130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063130 ID=TCONS_00063130|Name=TCONS_00063130|organism=Clytia hemisphaerica|type=transcript|length=667bp
AAActatttcaaaatctttaagTGTCGTCAAAAGCTTATACAATAAAGAT
GATGATGAAAGGCATTTACATTTACATCGTATCTGTTACACTTGGGAATA
TCAAAGAATCGTTCCCATTATTAATGACTTTGAGAACGTCTATACAAAGT
ATCAAGATGTATTGAAGTTGATGTTATCTAAAGATCAATATGAGTTCGAG
GTATCGTTTGTTAAGAAATTTATTCGTCATTCATTAGATATGATAAACAA
GCCACCTGATCACATCATGCTTGTCCTTGTGCCAATCATTCATACCGCAG
AGCCTCTTGAAATTCAACGTGCTGAAAAGGTCCCACCAGTCCGTTACGAA
GTTGTTTCCGAAGTTGTTGAAAATGTAACGCGTGTTAGTGGTAGGAAGTC
AGCAAGAGATGTTGAAGTATGTGAATGCCACGTGGCCGAGTCAGTTGTAC
CGTTGGCCCAAGAAGTTGTTGTGGTTAAAAAACCGATGGTGGTTAAACTA
AACTGTATAAAAGCTGTAATTGAAAATCAAGAAGAAAACTGTAGCTGTGA
TGTAAAGTGCGAAAAGTGACGTTGTTTTCAATGAAGCTTATTCGAAAGAT
CAATTTCAAATTAGTGACAAATATTCTGATTTGGGGTCAAAGAGCTTGGG
GAACAATTCAATCGCTG
Run BLAST on NCBI

protein sequence of TCONS_00063130-protein

>TCONS_00063130-protein ID=TCONS_00063130-protein|Name=TCONS_00063130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
TISKSLSVVKSLYNKDDDERHLHLHRICYTWEYQRIVPIINDFENVYTKY
QDVLKLMLSKDQYEFEVSFVKKFIRHSLDMINKPPDHIMLVLVPIIHTAE
PLEIQRAEKVPPVRYEVVSEVVENVTRVSGRKSARDVEVCECHVAESVVP
LAQEVVVVKKPMVVKLNCIKAVIENQEENCSCDVKCEK
Run BLAST on NCBI

transcript from alignment at scaffold_380:73707..74373

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063130 ID=TCONS_00063130|Name=TCONS_00063130|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at scaffold_380:73707..74373 (Clytia hemisphaerica)
CAGCGATTGAATTGTTCCCCAAGCTCTTTGACCCCAAATCAGAATATTTG
TCACTAATTTGAAATTGATCTTTCGAATAAGCTTCATTGAAAACAACGTC
ACTTTTCGCACTTTACATCACAGCTACAGTTTTCTTCTTGATTTTCAATT
ACAGCTTTTATACAGTTTAGTTTAACCACCATCGGTTTTTTAACCACAAC
AACTTCTTGGGCCAACGGTACAACTGACTCGGCCACGTGGCATTCACATA
CTTCAACATCTCTTGCTGACTTCCTACCACTAACACGCGTTACATTTTCA
ACAACTTCGGAAACAACTTCGTAACGGACTGGTGGGACCTTTTCAGCACG
TTGAATTTCAAGAGGCTCTGCGGTATGAATGATTGGCACAAGGACAAGCA
TGATGTGATCAGGTGGCTTGTTTATCATATCTAATGAATGACGAATAAAT
TTCTTAACAAACGATACCTCGAACTCATATTGATCTTTAGATAACATCAA
CTTCAATACATCTTGATACTTTGTATAGACGTTCTCAAAGTCATTAATAA
TGGGAACGATTCTTTGATATTCCCAAGTGTAACAGATACGATGTAAATGT
AAATGCCTTTCATCATCATCTTTATTGTATAAGCTTTTGACGACActtaa
agattttgaaatagTTT

Coding sequence (CDS) from alignment at scaffold_380:73707..74373

>TCONS_00063130 ID=TCONS_00063130|Name=TCONS_00063130|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_380:73707..74373 (Clytia hemisphaerica)
TCACTTTTCGCACTTTACATCACAGCTACAGTTTTCTTCTTGATTTTCAA
TTACAGCTTTTATACAGTTTAGTTTAACCACCATCGGTTTTTTAACCACA
ACAACTTCTTGGGCCAACGGTACAACTGACTCGGCCACGTGGCATTCACA
TACTTCAACATCTCTTGCTGACTTCCTACCACTAACACGCGTTACATTTT
CAACAACTTCGGAAACAACTTCGTAACGGACTGGTGGGACCTTTTCAGCA
CGTTGAATTTCAAGAGGCTCTGCGGTATGAATGATTGGCACAAGGACAAG
CATGATGTGATCAGGTGGCTTGTTTATCATATCTAATGAATGACGAATAA
ATTTCTTAACAAACGATACCTCGAACTCATATTGATCTTTAGATAACATC
AACTTCAATACATCTTGATACTTTGTATAGACGTTCTCAAAGTCATTAAT
AATGGGAACGATTCTTTGATATTCCCAAGTGTAACAGATACGATGTAAAT
GTAAATGCCTTTCATCATCATCTTTATTGTATAAGCTTTTGACGACActt
aaagattttgaaatagT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039547XLOC_039547Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063130-proteinTCONS_00063130-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063130-exon-scaffold_380-1491911889:73707..74373TCONS_00063130-exon-scaffold_380-1491911889:73707..74373Clytia hemisphaericaexon
TCONS_00063130-exon-scaffold_380-1510915933:73707..74373TCONS_00063130-exon-scaffold_380-1510915933:73707..74373Clytia hemisphaericaexon
TCONS_00063130-exon-scaffold_380-1575043694:73707..74373TCONS_00063130-exon-scaffold_380-1575043694:73707..74373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_380supercontigscaffold_380:73707..74373 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.289992	0.226614	0.0877068	0.0858074	1.5425	1.09979	0	0.30442	0.308769	0	0.663416	0.196522	0.0744114	0.282516	0.336272	0.326151	0.174452	0.411181	0.576409	0.861672	0.547838	0.293334	1.0658	1.34905	0.861237	0.654558	0.00812132	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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