TCONS_00063157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063157
Unique NameTCONS_00063157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063157 ID=TCONS_00063157|Name=TCONS_00063157|organism=Clytia hemisphaerica|type=transcript|length=212bp
TAGAAATTTCCGGTCTCAAACAGACCTGCTCTCAACTACAGCAGCAAGTA
GATGACTTgaaacaatcattttcaaaaagaggaagaaaaaagataactgC
TTCTATTAAAGCCAAGAGACGTGCTCGCAAAAGTGTGCAAGATTCGATTG
ATGAAGATGGTTATCAGAGGGACCTATTCAATGGAAAAGACCCATTTTCT
GGTGAAAATCGT
Run BLAST on NCBI

transcript from alignment at scaffold_383:43855..44574-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063157 ID=TCONS_00063157|Name=TCONS_00063157|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at scaffold_383:43855..44574- (Clytia hemisphaerica)
TAGAAATTTCCGGTCTCAAACAGACCTGCTCTCAACTACAGCAGCAAGTA
GATGACTTGAAACAATCATTTTCAAAAAGAGGAAGAAAAAAGATAACTGC
TTCTATTAAAGCCAAGGTCAGTATGTATATTGCATATAGTTTACCATTAT
AAATTCATCAAGAAGTGTTTTTATAAAAGAATTACAGTCTCAACATGTTA
TTAACTCTGATTCCCTTAGTTTAGAAAACTTTGTGAAATTTGGATATTTA
AATATTTAAAATTTTTATCTAGAGACGTGCTCGCAAAAGTGTGCAAGATT
CGATTGATGAAGATGGTTATCAGAGGGACCTATTCAATGGAAAAGAGTGA
GTTTGAATTTTTGTGTTTTGCCTTTTTACGACAAAAGCTGAAACTCTGCT
TATTTGTCATTGTGCTCTGATTTAATTCAAACAATGTCAGCTAGAGGTAA
AGGTCTCCATAGTTTTTTTATTTCAAAGTTTTTCACCTCTTCTGTAACAA
GTTCTCCTTTCTATCTAAAGGGTCTTGGCTACCTTATAAGGGAAGAAAAT
TTTGCGGTGTTCACAGTTTATCCTTCTTCCCACCTAAGCAGCTTGTGACT
AAACCTAAGCTAGAGAAATGTTGAAAGGTTAAAATGTTATTTATGAAGTC
AATCAATGTTTGAACAGGTTTGAATTTAAAATGTGTCTTGTCTTTTAGCC
CATTTTCTGGTGAAAATCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039568XLOC_039568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063157-exon-scaffold_383-1575043694:44459..44574TCONS_00063157-exon-scaffold_383-1575043694:44459..44574Clytia hemisphaericaexon
TCONS_00063157-exon-scaffold_383-1575043694:44229..44302TCONS_00063157-exon-scaffold_383-1575043694:44229..44302Clytia hemisphaericaexon
TCONS_00063157-exon-scaffold_383-1575043694:43855..43876TCONS_00063157-exon-scaffold_383-1575043694:43855..43876Clytia hemisphaericaexon
TCONS_00063157-exon-scaffold_383-1510915933:44459..44574TCONS_00063157-exon-scaffold_383-1510915933:44459..44574Clytia hemisphaericaexon
TCONS_00063157-exon-scaffold_383-1510915933:44229..44302TCONS_00063157-exon-scaffold_383-1510915933:44229..44302Clytia hemisphaericaexon
TCONS_00063157-exon-scaffold_383-1510915933:43855..43876TCONS_00063157-exon-scaffold_383-1510915933:43855..43876Clytia hemisphaericaexon
TCONS_00063157-exon-scaffold_383-1491911889:44459..44574TCONS_00063157-exon-scaffold_383-1491911889:44459..44574Clytia hemisphaericaexon
TCONS_00063157-exon-scaffold_383-1491911889:44229..44302TCONS_00063157-exon-scaffold_383-1491911889:44229..44302Clytia hemisphaericaexon
TCONS_00063157-exon-scaffold_383-1491911889:43855..43876TCONS_00063157-exon-scaffold_383-1491911889:43855..43876Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:43855..44574 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	9.42957	10.4319	1.79795	3.36644	1.17846	1.45972	0	0.931372	0.930078	0	0.794097	5.96531	0	3.22811	0	0	2.70424	0	0	4.37332	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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