TCONS_00063166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063166
Unique NameTCONS_00063166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063166 ID=TCONS_00063166|Name=TCONS_00063166|organism=Clytia hemisphaerica|type=transcript|length=585bp
CAAAAAAGACTGCCCCAAAAAAGACTGCCCCAAAAAAGACTGATGGTGAT
AATCAATCTAATGAGTCAGATGGCGTAGAAAAAAGTTATGACGATCCAGA
TACTCCTAACACTTTACCAGAATTCAATCCCCATCGAGAGCCGGGATTTC
ATAATGATGTACCAATCTTGCGTGGTTGTGAAGAACTAGATTTTTTCCAA
TTAAATTTAACAGATGACATTATCAACACCATTGTAACTCATACAAATAC
TTACGCATGGCTGAACATCGAAAAGAAAAAGTCTTTCGCCAAGGTTGACG
GTTCATGGAAAGAAACAAACGCTgcagaaatgaaaaaattcatCGCCTTG
ATTCTCTACATGGGTATAGTTAGACTTCCTCAAAATAACTTATACTGGAG
CACCAAATCTTTATTTCATGGGTTATGGGCAAGGGCAATAATGTCAAGGG
ATAGATTCAAAGCACTCTTGTCTGTTTTACACGTTGTTGATCCTAGTGAA
GAAGAGAAAGACGACAAGCTAAAGAAAGTAAGACCTTTCATCAATCATTT
TCGAAACCGATGTAAATCGCTTTATCAGCCGGAGC
Run BLAST on NCBI

protein sequence of TCONS_00063166-protein

>TCONS_00063166-protein ID=TCONS_00063166-protein|Name=TCONS_00063166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
KKTAPKKTAPKKTDGDNQSNESDGVEKSYDDPDTPNTLPEFNPHREPGFH
NDVPILRGCEELDFFQLNLTDDIINTIVTHTNTYAWLNIEKKKSFAKVDG
SWKETNAAEMKKFIALILYMGIVRLPQNNLYWSTKSLFHGLWARAIMSRD
RFKALLSVLHVVDPSEEEKDDKLKKVRPFINHFRNRCKSLYQPE
Run BLAST on NCBI

transcript from alignment at scaffold_383:80541..81125

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063166 ID=TCONS_00063166|Name=TCONS_00063166|organism=Clytia hemisphaerica|type=transcript|length=585bp|location=Sequence derived from alignment at scaffold_383:80541..81125 (Clytia hemisphaerica)
GCTCCGGCTGATAAAGCGATTTACATCGGTTTCGAAAATGATTGATGAAA
GGTCTTACTTTCTTTAGCTTGTCGTCTTTCTCTTCTTCACTAGGATCAAC
AACGTGTAAAACAGACAAGAGTGCTTTGAATCTATCCCTTGACATTATTG
CCCTTGCCCATAACCCATGAAATAAAGATTTGGTGCTCCAGTATAAGTTA
TTTTGAGGAAGTCTAACTATACCCATGTAGAGAATCAAGGCGatgaattt
tttcatttctgcAGCGTTTGTTTCTTTCCATGAACCGTCAACCTTGGCGA
AAGACTTTTTCTTTTCGATGTTCAGCCATGCGTAAGTATTTGTATGAGTT
ACAATGGTGTTGATAATGTCATCTGTTAAATTTAATTGGAAAAAATCTAG
TTCTTCACAACCACGCAAGATTGGTACATCATTATGAAATCCCGGCTCTC
GATGGGGATTGAATTCTGGTAAAGTGTTAGGAGTATCTGGATCGTCATAA
CTTTTTTCTACGCCATCTGACTCATTAGATTGATTATCACCATCAGTCTT
TTTTGGGGCAGTCTTTTTTGGGGCAGTCTTTTTTG

Coding sequence (CDS) from alignment at scaffold_383:80541..81125

>TCONS_00063166 ID=TCONS_00063166|Name=TCONS_00063166|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_383:80541..81125 (Clytia hemisphaerica)
CTCCGGCTGATAAAGCGATTTACATCGGTTTCGAAAATGATTGATGAAAG
GTCTTACTTTCTTTAGCTTGTCGTCTTTCTCTTCTTCACTAGGATCAACA
ACGTGTAAAACAGACAAGAGTGCTTTGAATCTATCCCTTGACATTATTGC
CCTTGCCCATAACCCATGAAATAAAGATTTGGTGCTCCAGTATAAGTTAT
TTTGAGGAAGTCTAACTATACCCATGTAGAGAATCAAGGCGatgaatttt
ttcatttctgcAGCGTTTGTTTCTTTCCATGAACCGTCAACCTTGGCGAA
AGACTTTTTCTTTTCGATGTTCAGCCATGCGTAAGTATTTGTATGAGTTA
CAATGGTGTTGATAATGTCATCTGTTAAATTTAATTGGAAAAAATCTAGT
TCTTCACAACCACGCAAGATTGGTACATCATTATGAAATCCCGGCTCTCG
ATGGGGATTGAATTCTGGTAAAGTGTTAGGAGTATCTGGATCGTCATAAC
TTTTTTCTACGCCATCTGACTCATTAGATTGATTATCACCATCAGTCTTT
TTTGGGGCAGTCTTTTTTGGGGCAGTCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039574XLOC_039574Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063166-proteinTCONS_00063166-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063166-exon-scaffold_383-1491911889:80541..81125TCONS_00063166-exon-scaffold_383-1491911889:80541..81125Clytia hemisphaericaexon
TCONS_00063166-exon-scaffold_383-1510915933:80541..81125TCONS_00063166-exon-scaffold_383-1510915933:80541..81125Clytia hemisphaericaexon
TCONS_00063166-exon-scaffold_383-1575043694:80541..81125TCONS_00063166-exon-scaffold_383-1575043694:80541..81125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:80541..81125 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283067	0.184023	0.641006	0.209041	2.54488	1.4077	2.18356	2.4985	0.556582	4.03801	0.669165	0.942606	1.00405	0.456187	0.375048	0.74747	1.77081	0.363005	0.100302	0.629754	0.273685	0.800965	0	0.295071	2.63394	1.71784	0.258761	0.414235	0.209455	0.320102
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029526PGBD
Blast
[Close]
BLAST of TCONS_00063166 vs. Swiss-Prot (Human)
Match: PGBD4 (PiggyBac transposable element-derived protein 4 OS=Homo sapiens GN=PGBD4 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.741e-17
Identity = 49/155 (31.61%), Postives = 84/155 (54.19%), Query Frame = 3 
Query:  141 PGFHNDVPILRGCEELDFFQLNLTDDIINTIVTHTNTYAWLNIEKK---KSFAKVDGSWKETNAAEMKKFIALILYMGIVRLPQNNLYWSTKSLFHGLWARAIMSRDRFKALLSVLHVVDPS-----EEEKDDKLKKVRPFINHFRNRCKSLYQP 581
            PG   DV  +   + L +F+L  T+++++ I   TN  A L   K    K F+++D  WK+T+  E+K F A++L  GIV+ P+  ++WST+ L    + R IM+ +RF  L   LH V+ S     + +    L+K++P  +   N+  ++Y P
Sbjct:   92 PGRKVDVSDI--TDPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMD-KWKDTDNDELKVFFAVMLLQGIVQKPELEMFWSTRPLLDTPYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTP 243
The following BLAST results are available for this feature:
BLAST of TCONS_00063166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGBD41.741e-1731.61PiggyBac transposable element-derived protein 4 OS... [more]
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