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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063180 ID=TCONS_00063180|Name=TCONS_00063180|organism=Clytia hemisphaerica|type=transcript|length=960bp
GCcatttgtaattatttttaaaaaagtattattttcaACTCAATGAAGAG
AGAGAGTGATGAACCATCCCATCAGGGGAActaaaaatattagaatattc
TGTGTGGTAAGAAACCAGACTGTATGGAGTAAAGCCTTAGGGTTGGTTTT
GCCTAACTTTCTAACGTTCCAAAggatttcttcttctttgttAGTTAAAG
CACGGCTTGCTAGTCCATTTTCNATTCTTTGTTAGTTAAAGCACGGCTTG
CGTTTGGTCTTCGACCTAGTCCATTTTTTCTGAGTGTTCTTGCTTTTCCT
TTGAGAATCTTGTTACATTTAGTGAACTCAATATCAGTAATAATTGATTT
TGGATACTAGTTCTTATCTTTCAAATATCCATATAAGGCTGGCCTGCATG
ACACGAAGGCTGTCAGGTTCATATTCTTTACCATCCTTTTTCGTCAGTTC
AGCGTAAAATTTAGACAGAACATCGTCCAATTCGTTTGCAGTATAATTCT
CCAGGTCTGAtttcttgtttctttctttgGCCCATGATTGATAAGCATTT
AACCAAGTCGATGTCGATCGTCTTGTTTTCTTGCTCTCAGATTTCTAAAT
CAATTTCTGCAGCTCTTCTTCACTAAACAGTTTGAATCTGCCCTTCGCCA
ttttattttgatcttttttggTTAGGTAGTcacaacaaaaaacaattttt
tttcggtttgtgtaaaccgcaggttacaggtcacaggttacaggtcacag
tcAGTGATGACaagttgactctaatcaatgtcattgcagaggaaaatgtt
tggaaaacacaaagaattaccaaaaacataattctcaagcaatttcatcc
atataaaaccatttcaaatatcaaaatttaaccatgtgcttttatcgatc
tttcgcagtttgcgccgtgtataacgcagaccagaaaatatttgaaacca
tattatacgt Run BLAST on NCBI transcript from alignment at scaffold_383:246874..247833 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063180 ID=TCONS_00063180|Name=TCONS_00063180|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at scaffold_383:246874..247833 (Clytia hemisphaerica)
acgtataatatggtttcaaatattttctggtctgcgttatacacggcgca
aactgcgaaagatcgataaaagcacatggttaaattttgatatttgaaat
ggttttatatggatgaaattgcttgagaattatgtttttggtaattcttt
gtgttttccaaacattttcctctgcaatgacattgattagagtcaacttG
TCATCACTgactgtgacctgtaacctgtgacctgtaacctgcggtttaca
caaaccgaaaaaaaattgttttttgttgtgACTACCTAAccaaaaaagat
caaaataaaaTGGCGAAGGGCAGATTCAAACTGTTTAGTGAAGAAGAGCT
GCAGAAATTGATTTAGAAATCTGAGAGCAAGAAAACAAGACGATCGACAT
CGACTTGGTTAAATGCTTATCAATCATGGGCcaaagaaagaaacaagaaa
TCAGACCTGGAGAATTATACTGCAAACGAATTGGACGATGTTCTGTCTAA
ATTTTACGCTGAACTGACGAAAAAGGATGGTAAAGAATATGAACCTGACA
GCCTTCGTGTCATGCAGGCCAGCCTTATATGGATATTTGAAAGATAAGAA
CTAGTATCCAAAATCAATTATTACTGATATTGAGTTCACTAAATGTAACA
AGATTCTCAAAGGAAAAGCAAGAACACTCAGAAAAAATGGACTAGGTCGA
AGACCAAACGCAAGCCGTGCTTTAACTAACAAAGAATNGAAAATGGACTA
GCAAGCCGTGCTTTAACTaacaaagaagaagaaatccTTTGGAACGTTAG
AAAGTTAGGCAAAACCAACCCTAAGGCTTTACTCCATACAGTCTGGTTTC
TTACCACACAgaatattctaatatttttagTTCCCCTGATGGGATGGTTC
ATCACTCTCTCTCTTCATTGAGTtgaaaataatacttttttaaaaataat
tacaaatgGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063180-exon-scaffold_383-1491911889:246874..247833 | TCONS_00063180-exon-scaffold_383-1491911889:246874..247833 | Clytia hemisphaerica | exon |
| TCONS_00063180-exon-scaffold_383-1510915933:246874..247833 | TCONS_00063180-exon-scaffold_383-1510915933:246874..247833 | Clytia hemisphaerica | exon |
| TCONS_00063180-exon-scaffold_383-1575043694:246874..247833 | TCONS_00063180-exon-scaffold_383-1575043694:246874..247833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_383 | supercontig | scaffold_383:246874..247833 . |
Blast
The following BLAST results are available for this feature:
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