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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063187 ID=TCONS_00063187|Name=TCONS_00063187|organism=Clytia hemisphaerica|type=transcript|length=1342bp
aaaaaatgattattgGCCGCAGAGCGCTTATAAGATATCCGACTCAATCA
CACTTCTATTTGTTTTAATCGAACCTTTAACTAAAGATTGGGGCCAttca
tatagtacgtacgcagtgaaggggcaGGGGGGGGGGTTTAACAAAAGCGT
ACGTCTATGGTTTAATTATTGAAGgtatttctattattttctgCGTGGCA
AATAAAATCTGAGAAACTTATGCATACGTACTATGTGAATGACCACATAG
TCCATTTCACAgtacagtcgcaaagcgtaatgggtaatcaggacaaCTGC
ACACTAATAACGACCTACTattgtccaaagttttgaatagttttgaagtt
ttttgcgtctagccaacatAAAGAcgttatggaggcgcaatcagtcctga
ttacccatgattcatttcgactgtaaAATGGCATATTCTAAACAGGAAAG
GATTCGAaaataaagagagaaaaaagggaaaacagAACAAGAGGGGTGGA
CAATAATATTATTCCGTCTATGATCAAAATTCCAATGTTATTGTTCATAT
ACCATATCAAGCCAATCATATCAAAAAGGCGTGCGTGGGCATTATCATTT
TATTGTACATTTGATAAAAGACTGTAATCATAAATTATGGAGAATTTGGC
GCGTCATCACGGACAAACCAATTGTGAATTGTACGAGGGACATTTTTAGT
AAGGCTCATCATAATCAATGAAGAAGATATCGACGATGTATAAATCAAGG
ATTTGGGTCGATTTAAATAGAAGCAGCATGGTGAATTGttcagaaaataa
caaaattctcAATGTTTTCGATACACCAGACCCAATTATTATCAATAatc
caatttcaattttttcaaagtttgtgaATTTGATATCTGTGCGGGACTCC
TTCCAGTTCCAAAACGAAGGTGGGTATCCAAAAATATATCCACCGCCCAA
AAAAATGATATAGCCCTTTAGTTATAGATTTGTCTCTCTGTATAATTTGG
GTGACATTTCGCGGAACGATGGGCGTTTGTCGGGTTCGGTGCACCAACAT
TTTAACATGATTTGGTAAATGTGTGGCGGACAGGCGTCCGGCTTCTCCAT
ACGGTATCCACTTAACACCTTATCCAATACGTTGTCCAGTGACTATTATT
TTTAttggtaaaaaaaagaaaaatgacgtCTTTAGAAAGACGGTTTTAGT
AGGGGCGGGAGggcgttgttgttgttgcttttTTCTAGAGTTAATCAAAG
ACTTTCTCTATTTATTCGGAGCTGTTCGTTTCGAAGATCTGATTTATCGA
GTATTTTTGAAAGTCTTCTTTAACAATAAAAATCATTTCGTT Run BLAST on NCBI transcript from alignment at scaffold_384:44722..47064+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063187 ID=TCONS_00063187|Name=TCONS_00063187|organism=Clytia hemisphaerica|type=transcript|length=2343bp|location=Sequence derived from alignment at scaffold_384:44722..47064+ (Clytia hemisphaerica)
aaaaaatgattattgGCCGCAGAGCGCTTATAAGATATCCGACTCAATCA
CACTTCTATTTGTTTTAATCGAACCTTTAACTAAAGATTGGGGCCAttca
tatagtacgtacgcagtgaaggggcaGGGGGGTTTAACAAAAGCGTACGT
CTATGGTTTAATTATTGAAGGTATTTCTATCATTTTCTGCGTGGCAAATA
AAATCTGAGAAATTTATGCATACGTACTATGTGAATGACCACATAGTCCA
TTTCACAgtacagtcgcaaagcgtaatgggtaatcaggacaaCTGCACAC
TAATAACGACCTACTattgtccaaagttttgaatagttttgaagtttttt
gcgtctagccaacatAAAGAcgttatggaggcgcaatcagtcctgattac
ccatgattcatttcgactgtaaAATGGCATATTCTAAACAGGAAAGGATT
CGAaaataaagagagaaaaaagggaaaacagAACAAGAGGGGTGGACAAT
AATATTATTCCGTCTATGATCAAAATTCCAATGTTATTGTTCATATACCA
TATCAAGCCAATCATATCAAAAAGGCGTGCGTGGGCATTATCATTTTATT
GTACATTTGATAAAAGACTGTAATCATAAATTATGGAGAATTTGGCGCGT
CATCACGGACAAACCAATTGTGAATTGAACGAGGGACATTTTTAGTAAGG
CTCATCATAATCAATAAAGAAANtaaaaagggggggggggctttaaTAGC
AAGTTTACGTATTAACCCTTTTAAGGACGGCGAAGTGACTGAATCGAATG
AAAACTGACCTAAACAATCGAGGAGGATAATTAGTTGATACAGTCGCTGA
TccgaactcgaacggggaatcttatttgttcagAATACAgtgaaattcga
attatagaattGATGGGGACTGAGAATTGCTTCGAATACAAGTTCGAATA
ACCGAAAGTCTACTAGTGTACAAAGCTCGCGAATATCAGTCCggatgaaa
agttaaaaaaatgattattgGCCGCAGAGCGCTTATAAGATATCCGACTC
AATCACACTTCTATTTGTTTTAATCGAACCTTTAACTAAAGATTGGGGCC
AttcatatagtacgtacgcagtgaaggggcaGGGGGGTTTAACAAAAGCG
TACGTCTATGGTTTAATTATTGAAGgtatttctattattttctgCGTGGC
AAATAAAATCTGAGAAACTTATGCATACGTACTATGTGAATGACCACATA
GTCCATTTCACAgtacagtcgcaaagcgtaatgggtaatcaggacaaCTG
CACACTAATAACGACCTACTattgtccaaagttttgaatagttttgaagt
tttttgcgtctagccaacatAAAGAcgttatggaggcgcaatcagtcctg
attacccatgattcatttcgactgtaaAATGGCATATTCTAAACAGGAAA
GGATTCGAaaataaagagagaaaaaagggaaaacagAACAAGAGGGGTGG
ACAATAATATTATTCCGTCTATGATCAAAATTCCAATGTTATTGTTCATA
TACCATATCAAGCCAATCATATCAAAAAGGCGTGCGTGGGCATTATCATT
TTATTGTACATTTGATAAAAGACTGTAATCATAAATTATGGAGAATTTGG
CGCGTCATCACGGACAAACCAATTGTGAATTGTACGAGGGACATTTTTAG
TAAGGCTCATCATAATCAATGAAGAAGATATCGACGATGTATAAATCAAG
GATTTGGGTCGATTTAAATAGAAGCAGCATGGTGAATTGttcagaaaata
acaaaattctcAATGTTTTCGATACACCAGACCCAATTATTATCAATAat
ccaatttcaattttttcaaagtttgtgaATTTGATATCTGTGCGGGACTC
CTTCCAGTTCCAAAACGAAGGTGGGTATCCAAAAATATATCCACCGCCCA
AAAAAATGATATAGCCCTTTAGTTATAGATTTGTCTCTCTGTATAATTTG
GGTGACATTTCGCGGAACGATGGGCGTTTGTCGGGTTCGGTGCACCAACA
TTTTAACATGATTTGGTAAATGTGTGGCGGACAGGCGTCCGGCTTCTCCA
TACGGTATCCACTTAACACCTTATCCAATACGTTGTCCAGTGACTATTAT
TTTTAttggtaaaaaaaagaaaaatgacgtCTTTAGAAAGACGGTTTTAG
TAGGGGCGGGAGggcgttgttgttgttgcttttTTCTAGAGTTAATCAAA
GACTTTCTCTATTTATTCGGAGCTGTTCGTTTCGAAGATCTGATTTATCG
AGTATTTTTGAAAGTCTTCTTTAACAATAAAAATCATTTCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063187-exon-scaffold_384-1491911889:44722..44852 | TCONS_00063187-exon-scaffold_384-1491911889:44722..44852 | Clytia hemisphaerica | exon |
| TCONS_00063187-exon-scaffold_384-1510915933:44722..44852 | TCONS_00063187-exon-scaffold_384-1510915933:44722..44852 | Clytia hemisphaerica | exon |
| TCONS_00063187-exon-scaffold_384-1575043694:44722..44852 | TCONS_00063187-exon-scaffold_384-1575043694:44722..44852 | Clytia hemisphaerica | exon |
| TCONS_00063187-exon-scaffold_384-1491911889:45854..47064 | TCONS_00063187-exon-scaffold_384-1491911889:45854..47064 | Clytia hemisphaerica | exon |
| TCONS_00063187-exon-scaffold_384-1510915933:45854..47064 | TCONS_00063187-exon-scaffold_384-1510915933:45854..47064 | Clytia hemisphaerica | exon |
| TCONS_00063187-exon-scaffold_384-1575043694:45854..47064 | TCONS_00063187-exon-scaffold_384-1575043694:45854..47064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_384 | supercontig | scaffold_384:44722..47064 + |
Blast
The following BLAST results are available for this feature:
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