|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063204 ID=TCONS_00063204|Name=TCONS_00063204|organism=Clytia hemisphaerica|type=transcript|length=862bp
ctcTCAACACAAAACTCAACTCTATTTGGTGGGAAAAAAAACTGGCCCTA
AATGGTCGTCATTTTGGAACGATAGAGGGATGATTCCTCTAAAGATTGTT
TATTATGTCTAACGCTAACCGCTACAATGTAAACGACGCCAGCGAACCAC
CCACCACGTTAAACCCCATCAACACCCGAATCACCAAAAACAAATCATTC
GCCATTTCAGCCGATGCAAGTAACTCGGCGCCGGCAATTCTAACCGCCCA
TAATAGCATCGCGTCTGGATTACTGAGCATTGCTAATTTCACTCAAACGC
CGTCCCAATACATCAATAAAGTATTCCTGGGAACCCGTGATATTAACCAG
CATCGAAGACTGAGTATCAATGTCTTACAAAGTAACTTAACTCGACGTAA
CACTATCCAACGACGTGTTAGATCATGGATAGCGCCCGCCAATACATCGG
CCAATGTGAAAATCTTTGGTGGCAAACGAGCCGTACAGATCGAACAGCAA
CGATCAAAAGCGGCTGGTTGGGTTATCCATCCATACAGTAGCTTAAGatA
TTACTGGGACTTGATCATCATGCTTGTATTGTTATTCAACATGCTTGTCC
TCCCTCTCAACGTTGCTTTTTTCTCAGAAAGTAACACCTCATTCGTAACC
TGGATCGTGGTACATACTTTTTCGGACATTGTTTTCATGCTGGATATTGT
ATTCAATTTTCGGACAGGCTATAGAAAAGATGAACCAGgacattttatta
gttttgtaTTGCAACcgaaaaaaattgctaaaaaCTATTTTAAATCGTGg
tttttgattgatttaattagtTCGTTTCCCTTCGACAATATCATTCTCTT
GATCTCTGGAGG Run BLAST on NCBI transcript from alignment at scaffold_384:18713..26521- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063204 ID=TCONS_00063204|Name=TCONS_00063204|organism=Clytia hemisphaerica|type=transcript|length=7809bp|location=Sequence derived from alignment at scaffold_384:18713..26521- (Clytia hemisphaerica)
CTCTCAACACAAAACTCAACTCTATTTGGTGGGAAAAAAAACTGGCCCTA
AATGGTCGTCATTTTGGAACGATAGAGGGATGATTCCTCTAAAGATTGTT
TATTATGTCTAACGCTAACCGCTACAATGTAAACGACGCCAGCGAACCAC
CCACCACGTTAAACCCCATCAACACCCGAATCACCAAAAACAAATCATTC
GCCATTTCAGCCGATGCAAGTAACTCGGCGCCGGCAATTCTAACCGCCCA
TAATAGCATCGCGTCTGGATTACTGAGCATTGCTAATTTCACTCAAACGC
CGTCCCAATACATCAATAAAGTATTCCTGGGAACCCGTGATATTAACCAG
CATCGAAGACTGAGTATCAATGTCTTACAAAGTAACTTAACTCGACGTAA
CACTATCCAACGACGTGTTAGATCATGGATAGCGCCCGCCAATACATCGG
CCAATGTGAAAATCTTTGGTGGCAAACGAGCCGTACAGATCGAACAGCAA
CGATCAAAAGCGGCTGGTTGGGTTATCCATCCATACAGTAGCTTAAGGTA
AGACCTTGCACATATTTTACTTTGATTTTAACCCTACAAAAGTAACCCTC
TTCCCTCTTCTACATCCTACGAGATTATTTTCCCCATGGGAAGTAATTTT
GTTTAATGGTAGGAAGTTTCATGGGTAAGTTTTGCAATTCAGGTTTCTTT
TAGCGAAAGTTTCTGCCAAGTAAGAATTTAAACCAAAGATTCAGCAAAGT
CTTTTTCTCGTAAAAGTCAACAATTTGATTCCTTTTTTCTCCATTTTCTT
CTTTTAGTTCTTTTTTACAAAGAATTCGTACAAGTTTTATTACAGTGGGT
TAACCTTAGTTGGGGTTCCCCACCTCAACGCACGTATCTTATTTATTTTC
CACCAAAATTCAAAACTTCTGAAAATATTTAAAATGTTCTCGGAAGAAGG
GGGAATTTTAGCATGGACATCCTGGACTAGGTTAACCTAACATCTTTACA
ACTCTAGCTACCAAATCCTATCTAAACAACAGAATTTGAAATTTAAATTG
CCAAAATCACACATATTCGAAGACTTCTTCCTTATTACTTCTTGATACTT
TTTCTCATTTTCTCTTCTTTCTTACCAAAGATAAAAAAGTACTTTAACTT
TAAAAATCACATTTTTTTCTCTACATCCTCGATTGTTAACTTTAAGATGA
AGATTTGGTAAAATGAACTTTTAAAGAGCCTTGAAATGTTTCGGATACGC
TTTAAAATGCAGTAATCTCTACCTCTCTTATTTTTATCGATTCCCTAAAT
CGCCTTAACGATCTACATTATCAATTTCTCAATTTTTTTCATCTTTACCA
TAATCCAAAGGATTTCGTTTGATGGTTTTTCTATTATACCATCCCACATT
TCTCTTTCCAATCCCAAATTTCCTTCAACGCGTTCGTTACTGAAATATTA
CATCAAGGCCATTTTAACACCACAGATTTTTTGCAATCATTGCTTATTTT
GTTTCAACCTTTGAAATCCAAGCTTAAGATAGACGTTTCTATAGCCAGTA
AGCTTGCGCTTTTCTATCCTACGTTGTCCACGTAACAACTTTCCTAAAAA
TACCCAAAATGATTTTAGATTTTTTGACTTCAAAGTTGAGCTATTATATT
GATCAAAAATAGTTTTACATTTTCAACATGAGTTATCAAGAAATTACATC
TGAGACTCGAGAAATTTTACTGTATAGTCCACTAAAAATATCATATCTTG
ATACTTAAGGGCTCTGACCATAGTGAATCTTTCATAATTGCCGTGTTTAA
AATGTGTTTTCTGACAGATGTAACCAACAAAACTATGGCATGTTATAAAT
TTTCTGTTAGACAAACTATTCCTGAATCTGAAAATTTAAAAATTGCATTG
AAAAAATTTGATGAAAAAGAAAATGAAGACTTTTGCTAGGAAGAGTATTT
CAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAAAATT
TTCGCAGTAGATGGTGTATCTTTTACCGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNATACTTCTTTGTCTCGAAATCTTCAAAATAGTGCTTTTTCATCAATTT
TTCATCTGGATTTTGTTTAAAAAAACAGTCATAACTTTTGACACATCTTT
TCAGAAAATTTTTCCGCAAAATTTAAAATAGTTCAATTCTTTGCGGACAG
CGTAAAGAAATTTTGAAGCAAAAAAATTAATTACCCATTAAAACTAAGCA
CTTTTTGTAAAAGAGGGTGATGCAACATATTATTAACATCTTTTTAAAGT
TCATAACGTCATTTTTGCAATTAAATTCTTAATTACTCTTAAGGGATTCG
ATTAAAAAGCAATTTATAGAGACAATTCTTCGTTAAAAGTGTTAAGGAAC
CTGAAATATAACTTTTATGTTCAAATACCAAATTCAATTTTTGGACTATG
GTCAGAGCCCTTAACCTTTAGACACCGCTGTTTTTAAAAACAGCGCGCGC
TGCTGCCGCTGTTTTTTTCATGAAAATGGAGGTTTCGCGCAAAATGTCAT
AAAATCTGAACCGCTAAAGCTTAAGTAAAAAGTAAACCCATTTTGAAATG
CTAAGGATCTATTTTTTCAGATAATACCAAAAAGACGCCTCATNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCCAG
TATCAAAACGTACGTGGTACGTCTCTCGGCCTGTATATATGACGTACGTG
GTACGTCTCTCGGCGTCTAAAGGTTAAACCTTAAAATGGTAAAAATATTT
TGCGTAGGAAGCGATACAGTCTTTCATACCTAACTCCATACTGCTTATTT
TCTATTTTTACCTTAAAAGTCTTTTCTTCAACATATATTTCCTATTCATG
TGTCCCGTTATTTTTTCTAAGAAGATTTAATCTGGAAAAAAGTCGGGAAA
AAAATATTGATGAAAATTTAAATCCCTGTTGAGCTCTAAACTGGTGAATT
TTATCTTTGAATATTTTGGTTCGATGTTCCAGTTATTCTTTTGTTATCTG
ACAAGATTACCAAGCGATCATCCTTTAGAATCTTTTTTTGGATTTTTGAA
AACATAAATATTTTTAACAAAATTTTTTTTTCTTATTTTTCCAATAAGAT
TATCTAATACAATGTTACAACAATATTGCACAATTTTTGAATCAAAATCT
TGAAAATAGTTTTTTTTAATGAGATTTTGCAAAATTTTACGGAAAGAGAA
ACTAATTTTCGCGGTGCGAGGGTATGAAATTGGCGTTTTTCGCGGCACTA
ATTTTCGTGGTTGACACCTAATTTTTTTTTTTCGAAACTCTTCCTAGGAG
TTTTCGAGAATTTATAGTAAAAATTGCATATCGCGGTAGACATCCAAAAA
CGCTAAAATAAGTTCCGCGAAAGTTAGTTCCCTTTTAAGGTAACCCTTGG
CTGGGTCCCATATCGACTTCTTTTCCATCGAAAAAAATAGTCCTTCCAAT
CAAAAATGATACAGTACCTTTTTTACTTTCATCCTCTCTTTTCTTAATTT
GTTGAACTTTTTTTTCGTGAAACATTTTTTTCTTTTTCAAAATATTTCAA
GATTGCAAGATATTTTTGATAAGATGGGATGTGAAGATACTAATGGCTAC
ATATCAACTGAAATTGGAAAATTTGAAGAAAAGAAACACTTTTAAAAAGA
GAAATCAATTTAATGTGACGTCACAATTTTGAAATTTTGCTAAAAGAGTA
AAAAATTGAACTAATGATTAAGTTAAAAAGGTACAACCTACGAGGTGTGC
CTAAAATAAGTTACCCTCTTTAAAGTTGATAAAAATCAAAACTTTTTTAT
TGGGAAGAGAAAAGATAAACTTAAATTTATGAAAAGTATACCGAAATGAA
TATAATTTATCTATTTTCTACAAAAAAGTTTTTAAGGATAATGCATTTTA
TTCCATTCGTGTATTTTTGAAGAAAAATCTATTTTGATCGTTTTTCTGAT
AATGTAGTTTTAAAGGAAATTGTGTTTACACATAATTTCTATAGGAAAAC
TTCATATCGTCCAATTGATAATCTTGCCTTTTTGATATGGAGGGTGTACT
TACAAGTGCTCGTCGCACCCATGTATTTTTAAGGAAAATTCTGTTTTGGT
GATTTTGTATTTTTGAAGGAAAAATAACTTGCTTTATTTTTGTAATGATC
AATATGTCCTTTGTCTAAATCAAAAACATTTATGTATACATACTATATGT
GTACTGACTGCACTGTACTACAATGCCGGACAAAAGGTTGTAGACAAATG
AAATTTCAGTGAAAAATGATGAGAAATAGAGCAAAATTACTCTTCAATGT
GTCTGAAAGTGGATGGAAGTTAAGAAAAACACTTTTGAAGTCGTTGCATT
GCTTTTGAATTGCTTTTGTTGTCCAGCATTGTGTATAACATTATGTGTGT
ATGTGTACACACTTTTTTCTTTATAAGAATTCACTTTATAAGAATGTCCA
TGATGAAAATGGCCAAAAAGTTAAGAATATGTTAAGGGGGGGGTTTCAGG
GGGTACCCGATTCCGTAATTCCGCCGATTTTTTCTCCAATTTCCGTCACA
CCGTCTTAAATTGAACCAAAATTCCGTCACCGAAAATTCCTTTGAAATTC
AATATTTTTGTCGAAAATTCCGCAAATTTTGAAAATCTTTTACCAATTCC
GAAATTCCGCAAATTTTTTTGCTAAATTCCGTTTCTCCGCACTAAAATTG
TCTAATTTTCCGTCTCCGTCAGAGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCCGAAAAAAGGGCCGATTCC
GCTCCTCCGCCAACCATGAAACCCCCCCCTGTTAAGAATATCATGGAATT
TTTCTAATGAAGCTAAGAATGCCCTTTTAAAAGCATTTTCAATTATAGAT
TGTCAATTATCTCCAAGTAAGGCTCACTCCTTTCAGAAAAGTGCCATTTT
ATGCTTGAGACATATGTACTAAATGTTAAATCTAGTCTAAATTAGGATCC
TGCTGGAGAATGCTGTAAGAATATTTTAGGATGATTTTCCCAAGAAAGTT
AAGAATATCCATGATGAAATGGATTTACACCATTCTTATAAAAAAAACGT
GTAACTTAATAAATTTATTTCTAACTTTATTTCTCTAATATTTTTTTTGC
AGATATTACTGGGACTTGATCATCATGCTTGTATTGTTATTCAACATGCT
TGTCCTCCCTCTCAACGTTGCTTTTTTCTCAGAAAGTAACACCTCATTCG
TAACCTGGATCGTGGTACATACTTTTTCGGACATTGTTTTCATGCTGGAT
ATTGTATTCAATTTTCGGACAGGCTATAGAAAAGATGAACCAGGACATTT
TATTAGTTTTGTATTGCAACCGAAAAAAATTGCTAAAAAGTAAGTTTTTT
TTTCATTTTCACTTTAGTAACATTTTTATATTTTTGGGTACACGTTTTTT
CTTTTAAGAAACAGACTTTTAAGAAACATGAGGCTCAGAATGCCAAAAAA
CTAAGAACATCTAAGAAACTTGCTGAGGCTGAGAATGAGAAAATAATATT
TTTTAACTCGGTTTTTTTAGAACCTTCTAATCTTTGCATGAAAAATAGGC
TGATTATGTCAAACAATTTAGAAACATGTAAGAAACATTTAAGGCTCAAA
AGGCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTT
AAAAAAAAACGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAAAAAAAAAACGTGTATTTTAGCGTTTAG
CAGAAACAGGCAAGTATGATATTTTCAGGCTTTCAACTTTATTTAATTGG
ATTTCTCGATTCGGGAGGGGTATAATGGCTTCCAGGCTATATTCACAGTC
TAGTCGGACAAATCACAAGCTTTTAGGATCTTCAAATCCTAAGTCCCTAA
GCTAAATTCAATTAAAACTCTAATTTCCTACCTTAGAGTTAACACACGGT
CAACAACTACTTGCAGCTTGGAAAATTTTCCTGAAAAATTTACTTTGTCC
CAAAAATTACGGCCAACATTGTAGGTCGATAAGTGACGCAAAATCTTGTC
GTGTTCCCTGTAATCTTATTCGATCCTATACCTTTTTACTTTCAAATAAA
TAAACTCCAACTCTGTCTTCCTTCGATGACCACCATTGCTTTACCAATGT
CATTTAAAAATTTCCTTGTCTTTTTTCAGCTCCTTTTGATATTTAGCTCC
CATTATTTTTCTATTTCGATTTTATTGACAGATTTTGTTATCCCTAAGAT
CCTCTCTATTAAAACCTTTTAGCCATTTTCGAGAAAAAAAATATTAATGG
AGAATGGTCTCTTAGCCTCGTCTAACTCCCTCTCAGAGCTTTGTATTTTT
TTTCTAGTACTCTGATTTCTTTATCGTTCGTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTT
CGTTCGTTCGAAAAAAATGATGAAGCCAGATTTTCGAGAAAAATATTTTC
GGGCAAATTTGGGCAAAAACCTGCCAACCTGAAAAAGACTAATTTATTTC
AAGGGAAAAACGTTACTCTGATAATTACATTGGACTCTCAGTAATTTGAA
CTTATATTATTCGAACTGATCCAAGCTCTCTTTGTATAATTGGGATATCT
CTCTCTGTAATTAGTTTCCCTGTTTGTGCTTTAACAAGTGAGGGTTACTG
TAATAATAACATCTTTTCTTTTTCGTTTTAGCTATTTTAAATCGTGGTTT
TTGATTGATTTAATTAGTTCGTTTCCCTTCGACAATATCATTCTCTTGAT
CTCTGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063204-exon-scaffold_384-1575043694:25975..26521 | TCONS_00063204-exon-scaffold_384-1575043694:25975..26521 | Clytia hemisphaerica | exon |
| TCONS_00063204-exon-scaffold_384-1575043694:20233..20469 | TCONS_00063204-exon-scaffold_384-1575043694:20233..20469 | Clytia hemisphaerica | exon |
| TCONS_00063204-exon-scaffold_384-1575043694:18713..18790 | TCONS_00063204-exon-scaffold_384-1575043694:18713..18790 | Clytia hemisphaerica | exon |
| TCONS_00063204-exon-scaffold_384-1510915933:25975..26521 | TCONS_00063204-exon-scaffold_384-1510915933:25975..26521 | Clytia hemisphaerica | exon |
| TCONS_00063204-exon-scaffold_384-1510915933:20233..20469 | TCONS_00063204-exon-scaffold_384-1510915933:20233..20469 | Clytia hemisphaerica | exon |
| TCONS_00063204-exon-scaffold_384-1510915933:18713..18790 | TCONS_00063204-exon-scaffold_384-1510915933:18713..18790 | Clytia hemisphaerica | exon |
| TCONS_00063204-exon-scaffold_384-1491911889:25975..26521 | TCONS_00063204-exon-scaffold_384-1491911889:25975..26521 | Clytia hemisphaerica | exon |
| TCONS_00063204-exon-scaffold_384-1491911889:20233..20469 | TCONS_00063204-exon-scaffold_384-1491911889:20233..20469 | Clytia hemisphaerica | exon |
| TCONS_00063204-exon-scaffold_384-1491911889:18713..18790 | TCONS_00063204-exon-scaffold_384-1491911889:18713..18790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_384 | supercontig | scaffold_384:18713..26521 - |
Blast
BLAST of TCONS_00063204 vs. Swiss-Prot (Human)
Match: HCN1 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 OS=Homo sapiens GN=HCN1 PE=1 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 2.497e-30 Identity = 64/152 (42.11%), Postives = 102/152 (67.11%), Query Frame = 3
Query: 405 IQRRVRSWIAPANTSANVKIFGGKRAVQIEQQRSKAAG-WVIHPYSSLRYYWDXXXXXXXXXXXXXXXXXVAFFSESNTSFVTWIVVHTFSDIVFMLDIVFNFRTGYRKDEPGHFISFVLQPKKIAKNYFKSWFLIDLISSFPFDNIILLIS 857
+QR+ S + P ++++FG ++AV+ EQ+R K AG W+IHPYS R+YWDLI++++++ N++++P+ + FF+E T+ WI+ + SD VF+LD++ NFRTG ++ I L PK I NY KSWF++D ISS P D I L++
Sbjct: 94 MQRQFTSMLQPGVNKFSLRMFGSQKAVEKEQERVKTAGFWIIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITFFTEQTTT--PWIIFNVASDTVFLLDLIMNFRTGTVNEDSSEII---LDPKVIKMNYLKSWFVVDFISSIPVDYIFLIVE 240
The following BLAST results are available for this feature:
|
