TCONS_00063262 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063262
Unique Name	TCONS_00063262
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	949

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_385:461920..466058+
coding sequence from alignment at scaffold_385:461920..466058+

transcript sequence

>TCONS_00063262 ID=TCONS_00063262|Name=TCONS_00063262|organism=Clytia hemisphaerica|type=transcript|length=949bp
ttgcaaaataaaaacaaaaagcactttcgttttcagtcaAACGTGTTTTT
TTTACCAAAGAAAGATGGTTGACGCTGCGACTAAAAAAACTGTAGCTGCT
ATTCCTCAACTCAAAACCAAAGCTGGTCCTAGNTTACCAAAGAAAGATGG
TTGACGCTGCGACTAAAAAAACTGTAGCTGCTATTCCTCAACTCAAAACT
AAAGCTGGTCCTAGGGATGGAGATCAATGGGTTGTCAGATTAAAGGAGGA
GTATCAGTCACTGATTAAGtATGTCAGTACAAATAAAGATCAAGACAATG
ATTGGTTTCGCTTGGAATCGAACAAAGAGGGTACAAGATGGTGGGGAAAA
TGTTGGCATATGCACAATCTTTTGAAATATGAATTCGACATAGAATTTGA
TATACCAATAACATACCCATCGACTGCGCCAGAAATTGCAATTCCCGAGC
TTGATGGAAAGACTGCTAAGATGTACAGgggAGGCAAAATTTGCTTGACG
GATCATTTTAAACCGTTGTGGTCAAGAAACGTTCCTAAGTTTGGCATCGC
ACATGCAATGGCACTCGGTctCGGACCATGGTTGGCTGTCGAAATTCCTG
ATTTGATCGAAAAAGGTTTAATTCTTCACAAAGAcgacaagaaagaaaaa
acgtAGAGATAATTTTTTGGGTATAGTAGGTGGCTAATTgtaattataat
ttttgtaattaaaggAATTTTTAATTGAAGTACCAAAACAACAGTATTTA
TTTTGATACCATCAAGAATGAGTGTTTTTTGTTTAGTTTAATATTAAAGC
Ttgatgaaaaacattttattaaataaataaatacatgtaattatttttga
aattcttccatctttgtttatttgaaattaatttcattGAAGATCATCTA
AAATTTAGTTCGATCtatgtaaagaaaaaaaaagattctgaCATTGACc

Run BLAST on NCBI

protein sequence of TCONS_00063262-protein

>TCONS_00063262-protein ID=TCONS_00063262-protein|Name=TCONS_00063262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MVDAATKKTVAAIPQLKTKAGPRDGDQWVVRLKEEYQSLIKYVSTNKDQD
NDWFRLESNKEGTRWWGKCWHMHNLLKYEFDIEFDIPITYPSTAPEIAIP
ELDGKTAKMYRGGKICLTDHFKPLWSRNVPKFGIAHAMALGLGPWLAVEI
PDLIEKGLILHKDDKKEKT

Run BLAST on NCBI

transcript from alignment at scaffold_385:461920..466058+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063262 ID=TCONS_00063262|Name=TCONS_00063262|organism=Clytia hemisphaerica|type=transcript|length=4139bp|location=Sequence derived from alignment at scaffold_385:461920..466058+ (Clytia hemisphaerica)
ttgcaaaataaaaacaaaaagcactttcgttttcagtcaAACGTGTTTTT
TTTACCAAAGAAAGATGGTTGACGCTGCGACTAAAAAAACTGTAGCTGCT
ATTCCTCAACTCAAAACCAAAGCTGGTCCTAGNTTACCAAAGAAAGATGG
TTGACGCTGCGACTAAAAAAACTGTAGCTGCTATTCCTCAACTCAAAACT
AAAGCTGGTCCTAGGGATGGAGATCAATGGGTTGTCAGATTAAAGGAGGA
GTATCAGTCACTGATTAAGGTATTagttatgaaatattttttcttttttg
gagaCTTGTATCCCAGTCTGGAAATTGCGGCTTGTGCGCCCGGATATCTC
TGGCGTAATTTGAGGTTTGAGATCTACTGCCCTCAACTTTGCCCAGTTAA
GTTGGCGGAGCCCCAGCTTAACATTTTCCTTCTTTCCAGACTGGCTTGTA
TCGCTCCCACAGACTCTAACCCCCAACCCcttcgcgtcaatttgacgtta
gttgtgggaagaatcgatatgtgagtgacatATATATTTGTCTCAATCCT
TGATTctaaggcttaggttttttctcatcttcaatttactgaagaaagca
gggaatttgatgcaagagttagattgtcaacaaagtgccgtaaaaaatca
ttgaataaaagaagaactttaaatctttaatatttccattttgaagaatt
ggtgcaaaaaagtgaaacatggaaaagtttcatttttcattggttTAATT
GAAATAGTGGATTTGGAAAACTTcccatgtttgtttttttgcacaattcc
ctgtaactatgggcaaccACCTGGTTGCTAAGATGATGGCTTGAAATCGA
ATGTGAGACCacagaaaacgaaagtaaaatcggcccgtactcgaaatcct
gtaatcttgatatacaagtttaagtctatactggctatgcatgtttgcct
ccgctggatgcaagttacccgatctcacggtatccTCTTATTCCTGATTT
TCTTTTTGAGGTCCcaaagagaaaaattttgattgaaataccGTTTTGCG
AGAAAAACGAAATACTAGTGAAACGCCTATTAGAGAACCTTTTACGAATA
atacttttgattttattatcaAATGGTCAACTAGAAAGGTGAAATCTTTA
TTCCCTTTAAAAGACAAGAACCCCGTACCCAACCTGCAAAATTTACCAAG
GTGATTGTTCTTGTGGTCAAATATTTACATTGGTGAAACTAAACGAAACG
TCGCTACAAGATGGGGAGAGCACGAAAATGTCACTTTAAAATCAGAGCAT
TTAAATTCCTACCCAAATCACAAatttcaatggaaaattgtCCTCAATGC
CCCCAAAGAATTGGAGAACTCTGAACTGAACTgatattttaaatgatttt
taattttcaataattttgtgCTTATGTGACAATGTATCATGTTGATTTTG
TCAATAGGAAAAACTTTATCCTATTTAGATGACCttgtttattgttttgt
ttaagaactttcaagcaaaatatttttttattttcggtTTCTTGGAAGTT
GGGTCTACATTCTTATAATTTAGCTGGGGGCTATTTTCATTAACTTCTCC
CCCTGAAAATCGCTGGGGGCTTGATCCCTCTGTATActataattttgttt
tgaacgaaaaagaacattttatgaTAAAAGTTActgttttttattctttc
agtATGTCAGTACAAATAAAGATCAAGACAATGATTGGTTTCGCTTGGAA
TCGAACAAAGAGGGTACAAGGTGATATTTCTTTATTTAGTAAAATCATCC
TACCTTTAATAAAAAAGTGTTATTGCTTTCACCTGAAACCAGGTTTCAAA
GGGAAACATTCGGTctatagaaatattttattcaatgattATTATCAACT
TATTTGCCAAGAAAGCAACGATTTCTACTACTGTAGGGTCCACTACTAat
aattaataattaattttacgATTACTCAACTTCTTCATTATTTTTAGATG
GTGGGGAAAATGTTGGCATATGCACAATCTTTTGAAATATGAATTCGACA
TAGAATTTGATGTAAGTTATCATCTACTCTGTGTTTTTGTCACTTAGAAA
AAGGAAAGATATTTTATTAAATAAAGAGCCAATTTGGTTGAATAGATTTG
GAAATGCAAAGATTCATTTCAGCAGTataacctttttttataagaacatc
ccaaatttttgaagccttcggatgttcttaaacttTACTGACCTCAAAAT
TTACGATTTTATAAACTCTTACAATGAACACTTTCAAGAATCGAGTATAA
AACTTAACATAAACTGAATCTAAGATTAAGTGAATCGGCTTGAAGCAGAA
ACTTACTTAAAGCTTCGTTTCTATAAGCTATACAGTTGACTCGCTCTTGA
ACTTCAATGGACCAAAACTTTTCTTCGAACGACACAAAGTTTCGAACTAC
ATACAAAGAGtaatttggactttttcagAATGATTAAAAGAAGTATTTAG
AATATTTCAGTTCAAATTGACGAAAAATTCCAATAATAATAGACCTTCGA
ATTTGAGAGAACCTCTTTTCCATATCTGAAACTTtatgttttgctttttc
tctCAATCTTAGATACCAATAACATACCCATCGACTGCGCCAGAAATTGC
AATTCCCGAGCTTGATGGAAAGACTGCTAAGATGTACAGGTATGAAAaga
tccttttttttttttgcattcatATTTTCGTAAGTATTGTTTGGTTAGAA
TTGATTTACTTTAATTACCGCATTCACACTTTAATGGTTATGTTTTAGGA
CCTCCCTTTATTAATAAACGTTCTGGCGAAAATCTCCCAGTCAATTTTGG
TTACTcatcaacaaaaatattctcTTACTCTTATTGTGTGAAAACTAGAT
AGAATTTCGCATCGATTGACTGATGGATTTCAAAATacaatcaaaaaaat
atatgaaatgataaaaatctacgaaaaagggcgatttttcaaaaaattct
aattttttctgaatttggcGGAGATTTAATCCGccaaattttgctaaaat
ttcgcCAAATTTTCTCCTAACTGAATCTATGCCAAAATTGATCCAGGTAA
TTGAACCGTACATTGTTACCTACATTGTATTTTGGGGTCCTGACATAAAT
TTTGGAATCCTGACATAAATTTTGGAATGGGCATAAAATGCATTTTAATC
GATGATTAAAACatcataaataaaacaaaagcaGCCTATGTTTAAAGTGG
TCTTTTTGtggcaaagaaattttgtttttaactttttattttcttttttc
aggggAGGCAAAATTTGCTTGACGGATCATTTTAAACCGTTGTGGTCAAG
AAACGTTCCTAAGTTTGGCATCGCACATGCAATGGCACTCGGTGTAAGTA
GTCATTAAGACATttagaattttcagattcatcaGAGCcaccataactcg
aacaattttccattggcTTTAACTGTTCACTCTTTTTTCCTCGTAACGCT
TTGGTTTTCACATGGAAGGAAAAAAGAATGCACGCTCAAAGCGAATGGTC
TTCAATAACTCTCGAATTTTCCATTTACATACGGAACAAAGTTTTGTTAC
CCGGTACATGATGTTAACACCCTTATAGGCtgttgcctggaattccaaga
ttttttctctAACTGTGAGATTAATTTCGGCAACATGTTTCAAAAATTAC
ATCTAGACTTGTTGATTTattgcttgaaatatttttgaattcttcttaat
ttttttaagctCGGACCATGGTTGGCTGTCGAAATTCCTGATTTGATCGA
AAAAGGTTTAATTCTTCACAAAGAcgacaagaaagaaaaaacgtAGAGAT
AATTTTTTGGGTATAGTAGGTGGCTAATTgtaattataatttttgtaatt
aaaggAATTTTTAATTGAAGTACCAAAACAACAGTATTTATTTTGATACC
ATCAAGAATGAGTGTTTTTTGTTTAGTTTAATATTAAAGCTtgatgaaaa
acattttattaaataaataaatacatgtaattatttttgaaattcttcca
tctttgtttatttgaaattaatttcattGAAGATCATCTAAAATTTAGTT
CGATCtatgtaaagaaaaaaaaagattctgaCATTGACc

Coding sequence (CDS) from alignment at scaffold_385:461920..466058+

>TCONS_00063262 ID=TCONS_00063262|Name=TCONS_00063262|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_385:461920..466058+ (Clytia hemisphaerica)
ATGGTTGACGCTGCGACTAAAAAAACTGTAGCTGCTATTCCTCAACTCAA
AACTAAAGCTGGTCCTAGGGATGGAGATCAATGGGTTGTCAGATTAAAGG
AGGAGTATCAGTCACTGATTAAGtATGTCAGTACAAATAAAGATCAAGAC
AATGATTGGTTTCGCTTGGAATCGAACAAAGAGGGTACAAGATGGTGGGG
AAAATGTTGGCATATGCACAATCTTTTGAAATATGAATTCGACATAGAAT
TTGATATACCAATAACATACCCATCGACTGCGCCAGAAATTGCAATTCCC
GAGCTTGATGGAAAGACTGCTAAGATGTACAGgggAGGCAAAATTTGCTT
GACGGATCATTTTAAACCGTTGTGGTCAAGAAACGTTCCTAAGTTTGGCA
TCGCACATGCAATGGCACTCGGTctCGGACCATGGTTGGCTGTCGAAATT
CCTGATTTGATCGAAAAAGGTTTAATTCTTCACAAAGAcgacaagaaaga
aaaaacgtAGATGGTTGACGCTGCGACTAAAAAAACTGTAGCTGCTATTC
CTCAACTCAAAACTAAAGCTGGTCCTAGGGATGGAGATCAATGGGTTGTC
AGATTAAAGGAGGAGTATCAGTCACTGATTAAGtATGTCAGTACAAATAA
AGATCAAGACAATGATTGGTTTCGCTTGGAATCGAACAAAGAGGGTACAA
GATGGTGGGGAAAATGTTGGCATATGCACAATCTTTTGAAATATGAATTC
GACATAGAATTTGATATACCAATAACATACCCATCGACTGCGCCAGAAAT
TGCAATTCCCGAGCTTGATGGAAAGACTGCTAAGATGTACAGgggAGGCA
AAATTTGCTTGACGGATCATTTTAAACCGTTGTGGTCAAGAAACGTTCCT
AAGTTTGGCATCGCACATGCAATGGCACTCGGTctCGGACCATGGTTGGC
TGTCGAAATTCCTGATTTGATCGAAAAAGGTTTAATTCTTCACAAAGAcg
acaagaaagaaaaaacgtAGATGGTTGACGCTGCGACTAAAAAAACTGTA
GCTGCTATTCCTCAACTCAAAACTAAAGCTGGTCCTAGGGATGGAGATCA
ATGGGTTGTCAGATTAAAGGAGGAGTATCAGTCACTGATTAAGtATGTCA
GTACAAATAAAGATCAAGACAATGATTGGTTTCGCTTGGAATCGAACAAA
GAGGGTACAAGATGGTGGGGAAAATGTTGGCATATGCACAATCTTTTGAA
ATATGAATTCGACATAGAATTTGATATACCAATAACATACCCATCGACTG
CGCCAGAAATTGCAATTCCCGAGCTTGATGGAAAGACTGCTAAGATGTAC
AGgggAGGCAAAATTTGCTTGACGGATCATTTTAAACCGTTGTGGTCAAG
AAACGTTCCTAAGTTTGGCATCGCACATGCAATGGCACTCGGTctCGGAC
CATGGTTGGCTGTCGAAATTCCTGATTTGATCGAAAAAGGTTTAATTCTT
CACAAAGAcgacaagaaagaaaaaacgtAGATGGTTGACGCTGCGACTAA
AAAAACTGTAGCTGCTATTCCTCAACTCAAAACTAAAGCTGGTCCTAGGG
ATGGAGATCAATGGGTTGTCAGATTAAAGGAGGAGTATCAGTCACTGATT
AAGtATGTCAGTACAAATAAAGATCAAGACAATGATTGGTTTCGCTTGGA
ATCGAACAAAGAGGGTACAAGATGGTGGGGAAAATGTTGGCATATGCACA
ATCTTTTGAAATATGAATTCGACATAGAATTTGATATACCAATAACATAC
CCATCGACTGCGCCAGAAATTGCAATTCCCGAGCTTGATGGAAAGACTGC
TAAGATGTACAGgggAGGCAAAATTTGCTTGACGGATCATTTTAAACCGT
TGTGGTCAAGAAACGTTCCTAAGTTTGGCATCGCACATGCAATGGCACTC
GGTctCGGACCATGGTTGGCTGTCGAAATTCCTGATTTGATCGAAAAAGG
TTTAATTCTTCACAAAGAcgacaagaaagaaaaaacgtAGATGGTTGACG
CTGCGACTAAAAAAACTGTAGCTGCTATTCCTCAACTCAAAACTAAAGCT
GGTCCTAGGGATGGAGATCAATGGGTTGTCAGATTAAAGGAGGAGTATCA
GTCACTGATTAAGtATGTCAGTACAAATAAAGATCAAGACAATGATTGGT
TTCGCTTGGAATCGAACAAAGAGGGTACAAGATGGTGGGGAAAATGTTGG
CATATGCACAATCTTTTGAAATATGAATTCGACATAGAATTTGATATACC
AATAACATACCCATCGACTGCGCCAGAAATTGCAATTCCCGAGCTTGATG
GAAAGACTGCTAAGATGTACAGgggAGGCAAAATTTGCTTGACGGATCAT
TTTAAACCGTTGTGGTCAAGAAACGTTCCTAAGTTTGGCATCGCACATGC
AATGGCACTCGGTctCGGACCATGGTTGGCTGTCGAAATTCCTGATTTGA
TCGAAAAAGGTTTAATTCTTCACAAAGAcgacaagaaagaaaaaacgtAG
ATGGTTGACGCTGCGACTAAAAAAACTGTAGCTGCTATTCCTCAACTCAA
AACTAAAGCTGGTCCTAGGGATGGAGATCAATGGGTTGTCAGATTAAAGG
AGGAGTATCAGTCACTGATTAAGtATGTCAGTACAAATAAAGATCAAGAC
AATGATTGGTTTCGCTTGGAATCGAACAAAGAGGGTACAAGATGGTGGGG
AAAATGTTGGCATATGCACAATCTTTTGAAATATGAATTCGACATAGAAT
TTGATATACCAATAACATACCCATCGACTGCGCCAGAAATTGCAATTCCC
GAGCTTGATGGAAAGACTGCTAAGATGTACAGgggAGGCAAAATTTGCTT
GACGGATCATTTTAAACCGTTGTGGTCAAGAAACGTTCCTAAGTTTGGCA
TCGCACATGCAATGGCACTCGGTctCGGACCATGGTTGGCTGTCGAAATT
CCTGATTTGATCGAAAAAGGTTTAATTCTTCACAAAGAcgacaagaaaga
aaaaacgtAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039645	XLOC_039645	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00063262-protein	TCONS_00063262-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_385	supercontig	scaffold_385:461920..466058 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
175.327	181.865	178.104	182.744	79.0068	63.5051	128.639	136.414	79.5083	89.4261	48.864	43.3925	30.2273	25.9608	33.0766	36.1098	52.5102	44.4145	20.4877	37.9713	37.3149	34.2539	65.9645	57.5724	40.6646	39.8295	45.4915	25.4676	47.4127	37.0834

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR014806	Ufc1
IPR016135	UBQ-conjugating_enzyme/RWD

Blast

[Close]

BLAST of TCONS_00063262 vs. Swiss-Prot (Human)
Match: UFC1 (Ubiquitin-fold modifier-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 PE=1 SV=3)

HSP 1 Score: 288.115 bits (736), Expect = 3.220e-97
Identity = 132/163 (80.98%), Postives = 149/163 (91.41%), Query Frame = 3

Query:  147 MVDAATKKTVAAIPQLKTKAGPRDGDQWVVRLKEEYQSLIKYVSTNKDQDNDWFRLESNKEGTRWWGKCWHMHNLLKYEFDIEFDIPITYPSTAPEIAIPELDGKTAKMYRGGKICLTDHFKPLWSRNVPKFGIAHAMALGLGPWLAVEIPDLIEKGLILHKD 635
            M D AT++ V+ IP LKT AGPRD + WV RLKEEYQSLI+YV  NK+ DNDWFRLESNKEGTRW+GKCW++H+LLKYEFDIEFDIPITYP+TAPEIA+PELDGKTAKMYRGGKICLTDHFKPLW+RNVPKFG+AH MALGLGPWLAVEIPDLI+KG+I HK+
Sbjct:    1 MADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163

The following BLAST results are available for this feature:

BLAST of TCONS_00063262 vs. Swiss-Prot (Human)

BLAST of TCONS_00063262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UFC1	3.220e-97	80.98	Ubiquitin-fold modifier-conjugating enzyme 1 OS=Ho...	[more]

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TCONS_00063262 (transcript) - C. hemisphaerica