TCONS_00063263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063263
Unique NameTCONS_00063263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063263 ID=TCONS_00063263|Name=TCONS_00063263|organism=Clytia hemisphaerica|type=transcript|length=967bp
TTAACatggttaaaataaacacaatctaacaaaatttatgATTTGTCGGA
AAAAGTTGTTTTGGCAAACAAGTTCACATTgagaaaattcacaaaaaggG
GAGTGTTGTTATCTTTTGCTCTCAACTAAAGGGTGTCAAAACATAGATAT
ATCATCCAACTTCTATCGAACTTCATAGAAAATCCAACAAAGAGTGGACA
ACAGTATATCAAGAAGAGAAAAGTTTTAAgtagtctttttttttgaaaaa
aaacattttttttcatattcgaCAAAAATGGCAGATAGACAAGATGGTTA
TGGATTTACGGCTGAATGCCAAGAAATTATCCAAGGAAAATGGAACCAAG
ATTTAGctGATCAAGCCGCCGCATGGATCAGTTCTTACGTCCCAGCTCTT
GCCAAGGCTAGTTATTCACCAGCTGACTTGCAAGAAAAACTTAAAGATGG
TCAAATACTTTGCGCTTTAGCTAATGCTATTGTTCCTGAATCCATTTTGA
GAGTTAACACGAACAAAATGGCCTTCAAACAAATGGAAAACATTGGTAAA
TTCTTAGCATTCTGTGAAGAATTTGGCTGCCTTAGAACCGATCTTTTCCA
GACTGTCGATTTATACGAAGGTGTTAATATGCCAACAGTTGTTAATGGCA
TCATTGCTTTAGGTCGCAAGGTCAGCGCCAAGGGTGGACGTGGTATCGGC
CCAAAAGAGTCAGCTAAAAATACACGTAACTTCTCAGAAGAGCAAATCCG
CCAAGGGCGTGACGCACAAATCGGGCTTCAAGCTGGTACCAACAAATTCG
CAAATCAATCGGGACAGAATTTCGGCAAAACTAGAGCTATTTTAGACtag
aaatctttttcttttgtttttcttgtatAAACGACTCAatcattttgttg
ttgttttttgtctTTAGTTTATTTAGTTTTGAGAACTGATTTGTGTTTTG
ACGGGCCACCGTTATTT
Run BLAST on NCBI

protein sequence of TCONS_00063263-protein

>TCONS_00063263-protein ID=TCONS_00063263-protein|Name=TCONS_00063263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MADRQDGYGFTAECQEIIQGKWNQDLADQAAAWISSYVPALAKASYSPAD
LQEKLKDGQILCALANAIVPESILRVNTNKMAFKQMENIGKFLAFCEEFG
CLRTDLFQTVDLYEGVNMPTVVNGIIALGRKVSAKGGRGIGPKESAKNTR
NFSEEQIRQGRDAQIGLQAGTNKFANQSGQNFGKTRAILD
Run BLAST on NCBI

transcript from alignment at scaffold_385:532655..534497+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063263 ID=TCONS_00063263|Name=TCONS_00063263|organism=Clytia hemisphaerica|type=transcript|length=1843bp|location=Sequence derived from alignment at scaffold_385:532655..534497+ (Clytia hemisphaerica)
TTAACatggttaaaataaacacaatctaacaaaatttatgATTTGTCGGA
AAAAGTTGTTTTGGCAAACAAGTTCACATTgagaaaattcacaaaaaggG
GAGTGTTGTTATCTTTTGCTCTCAACTAAAGGGTGTCAAAACATAGATAT
ATCATCCAACTTCTATCGAACTTCATAGAAAATCCAACAAAGAGTGGACA
ACAGTATATCAAGAAGAGAAAAGTTTTAAgtagtctttttttttgaaaaa
aaacattttttttcatattcgaCAAAAATGGCAGATAGACAAGATGGTTA
TGGATTTACGGCTGAATGCCAAGAAATTATCCAAGGAAAATGGAACCAAG
ATTTAGGTAAGAATAAAAtccactttttcttgctttggtAGCAAAATAAA
AATCAGATGCTCGCGGGAAAGGACTAAGAGAGAGTCTTGACAGTAATAAT
GAATTGCAACCTTACCTTTTTTCTATATAACTGTGCTCCCCCCCCCACAG
ACCATGCCAtacattttttaaagttactATTTTTAATTAAGccataaaaa
ctattattctctccaattagataacgttttaaggtgttttgagggtgtaa
aaagtgaaaagttttcTCCGTCgtccaaccatggtgggcgacattttttc
ccaaaatgttGGCCCTcccactcaaaatggctcgccggggcccatgtGTA
ATAAGGGATAGGTGAAAGATTTTGAATATAATCTTTTTGACTGACCATTA
AATTTAAGGCTTtcatataacattttttttcttttataagaacaacttta
TTAAAACGGTGAGGTTCTAAAGCATGACCTTGTATAAATATTAAGGGTTT
ATAGTAAAAATAGGGCAAAAAGCCAAGAAAACCTCATCTTTGCCATAAAG
AAAAGGACAGaattgaggctcaaagtgctgAAAAATAAGGACATACAAGT
CTATCTTAGAGAAAAAGAGTGAAAAGAAGTGACGGATCCGATAGgactag
cctagaaatctaagctagtttgattaaGTTACCatgataaatctgatggt
aagttgtgactaaATAACTACGATAGGACTACCTCccaaatgtcaaaatt
tgagtAAATAGAAAATTTCCCACATTGAAAATGTAATTGATTAAATAATT
TAtcccatttttcttttagctGATCAAGCCGCCGCATGGATCAGTTCTTA
CGTCCCAGCTCTTGCCAAGGCTAGTTATTCACCAGCTGACTTGCAAGAAA
AACTTAAAGATGGTCAAATACTTTGCGCTTTAGCTAATGCTATTGTTCCT
GAATCCATTTTGAGAGTTAACACGAACAAAATGGCCTTCAAACAAATGGA
AAACATTGGTAAATTCTTAGCATTCTGTGAAGAATTTGGCTGCCTTAGAA
CCGATCTTTTCCAGACTGTCGATTTATACGAAGGTGTTAATATGCCAACA
GTTGTTAATGGCATCATTGCTTTAGGTCGCAAAGTCANATACGAAGGTGT
TAATATGCCAACAGTTGTTAATGGCATCATTGCTTTAGGTCGCAAGGTCA
GCGCCAAGGGTGGACGTGGTATCGGCCCAAAAGAGTCAGCTAAAAATACA
CGTAACTTCTCAGAAGAGCAAATCCGCCAAGGGCGTGACGCACAAATCGG
GCTTCAAGCTGGTACCAACAAATTCGCAAATCAATCGGGACAGAATTTCG
GCAAAACTAGAGCTATTTTAGACtagaaatctttttcttttgtttttctt
gtatAAACGACTCAatcattttgttgttgttttttgtctTTAGTTTATTT
AGTTTTGAGAACTGATTTGTGTTTTGACGGGCCACCGTTATTT

Coding sequence (CDS) from alignment at scaffold_385:532655..534497+

>TCONS_00063263 ID=TCONS_00063263|Name=TCONS_00063263|organism=Clytia hemisphaerica|type=CDS|length=1719bp|location=Sequence derived from alignment at scaffold_385:532655..534497+ (Clytia hemisphaerica)
ATGGCAGATAGACAAGATGGTTATGGATTTACGGCTGAATGCCAAGAAAT
TATCCAAGGAAAATGGAACCAAGATTTAGctGATCAAGCCGCCGCATGGA
TCAGTTCTTACGTCCCAGCTCTTGCCAAGGCTAGTTATTCACCAGCTGAC
TTGCAAGAAAAACTTAAAGATGGTCAAATACTTTGCGCTTTAGCTAATGC
TATTGTTCCTGAATCCATTTTGAGAGTTAACACGAACAAAATGGCCTTCA
AACAAATGGAAAACATTGGTAAATTCTTAGCATTCTGTGAAGAATTTGGC
TGCCTTAGAACCGATCTTTTCCAGACTGTCGATTTATACGAAGGTGTTAA
TATGCCAACAGTTGTTAATGGCATCATTGCTTTAGGTCGCAAGGTCAGCG
CCAAGGGTGGACGTGGTATCGGCCCAAAAGAGTCAGCTAAAAATACACGT
AACTTCTCAGAAGAGCAAATCCGCCAAGGGCGTGACGCACAAATCGGGCT
TCAAGCTGGTACCAACAAATTCGCAAATCAATCGGGACAGAATTTCGGCA
AAACTAGAGCTATTTTAGACtagATGGCAGATAGACAAGATGGTTATGGA
TTTACGGCTGAATGCCAAGAAATTATCCAAGGAAAATGGAACCAAGATTT
AGctGATCAAGCCGCCGCATGGATCAGTTCTTACGTCCCAGCTCTTGCCA
AGGCTAGTTATTCACCAGCTGACTTGCAAGAAAAACTTAAAGATGGTCAA
ATACTTTGCGCTTTAGCTAATGCTATTGTTCCTGAATCCATTTTGAGAGT
TAACACGAACAAAATGGCCTTCAAACAAATGGAAAACATTGGTAAATTCT
TAGCATTCTGTGAAGAATTTGGCTGCCTTAGAACCGATCTTTTCCAGACT
GTCGATTTATACGAAGGTGTTAATATGCCAACAGTTGTTAATGGCATCAT
TGCTTTAGGTCGCAAGGTCAGCGCCAAGGGTGGACGTGGTATCGGCCCAA
AAGAGTCAGCTAAAAATACACGTAACTTCTCAGAAGAGCAAATCCGCCAA
GGGCGTGACGCACAAATCGGGCTTCAAGCTGGTACCAACAAATTCGCAAA
TCAATCGGGACAGAATTTCGGCAAAACTAGAGCTATTTTAGACtagATGG
CAGATAGACAAGATGGTTATGGATTTACGGCTGAATGCCAAGAAATTATC
CAAGGAAAATGGAACCAAGATTTAGctGATCAAGCCGCCGCATGGATCAG
TTCTTACGTCCCAGCTCTTGCCAAGGCTAGTTATTCACCAGCTGACTTGC
AAGAAAAACTTAAAGATGGTCAAATACTTTGCGCTTTAGCTAATGCTATT
GTTCCTGAATCCATTTTGAGAGTTAACACGAACAAAATGGCCTTCAAACA
AATGGAAAACATTGGTAAATTCTTAGCATTCTGTGAAGAATTTGGCTGCC
TTAGAACCGATCTTTTCCAGACTGTCGATTTATACGAAGGTGTTAATATG
CCAACAGTTGTTAATGGCATCATTGCTTTAGGTCGCAAGGTCAGCGCCAA
GGGTGGACGTGGTATCGGCCCAAAAGAGTCAGCTAAAAATACACGTAACT
TCTCAGAAGAGCAAATCCGCCAAGGGCGTGACGCACAAATCGGGCTTCAA
GCTGGTACCAACAAATTCGCAAATCAATCGGGACAGAATTTCGGCAAAAC
TAGAGCTATTTTAGACtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039646XLOC_039646Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063263-proteinTCONS_00063263-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063263-exon-scaffold_385-1491911889:532655..533010TCONS_00063263-exon-scaffold_385-1491911889:532655..533010Clytia hemisphaericaexon
TCONS_00063263-exon-scaffold_385-1510915933:532655..533010TCONS_00063263-exon-scaffold_385-1510915933:532655..533010Clytia hemisphaericaexon
TCONS_00063263-exon-scaffold_385-1575043694:532655..533010TCONS_00063263-exon-scaffold_385-1575043694:532655..533010Clytia hemisphaericaexon
TCONS_00063263-exon-scaffold_385-1491911889:533824..534087TCONS_00063263-exon-scaffold_385-1491911889:533824..534087Clytia hemisphaericaexon
TCONS_00063263-exon-scaffold_385-1510915933:533824..534087TCONS_00063263-exon-scaffold_385-1510915933:533824..534087Clytia hemisphaericaexon
TCONS_00063263-exon-scaffold_385-1575043694:533824..534087TCONS_00063263-exon-scaffold_385-1575043694:533824..534087Clytia hemisphaericaexon
TCONS_00063263-exon-scaffold_385-1491911889:534151..534497TCONS_00063263-exon-scaffold_385-1491911889:534151..534497Clytia hemisphaericaexon
TCONS_00063263-exon-scaffold_385-1510915933:534151..534497TCONS_00063263-exon-scaffold_385-1510915933:534151..534497Clytia hemisphaericaexon
TCONS_00063263-exon-scaffold_385-1575043694:534151..534497TCONS_00063263-exon-scaffold_385-1575043694:534151..534497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:532655..534497 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.655262	0.0456417	0.264972	0.985087	4.03958	4.04004	22.5654	24.7309	14.9482	10.5037	3.2245	10.5983	387.141	372.988	23.3347	8.043	131.935	154.604	756.412	419.168	4.2538	4.43665	0.85864	1.07336	0.402015	1.25576	32.795	0.273971	0.519492	0.105856
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003096SM22_calponin
IPR001715CH-domain
IPR000557Calponin_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00063263 vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.019e-36
Identity = 80/202 (39.60%), Postives = 116/202 (57.43%), Query Frame = 2 
Query:  278 MADRQDGYGFTAECQEIIQGKWNQDLADQAAAWISSYVPALAKASYSP---ADLQEKLKDGQILCALANAIVP---ESILRVNTNKMAFKQMENIGKFLAFCEEFGCLRTDLFQTVDLYEGVNMPTVVNGIIALGRKVSAK------GGRGIGPKESAKNTRNFSEEQIRQGRDAQIGLQAGTNKFANQSGQN-FGKTRAIL 844
            MA+R   YG + E QE I+ K++ DL ++   WI   +       + P   A  Q+ L DG +LC L N++ P   E I +++ +KMAFKQME I +FL   E +G   TD+FQTVDL+EG +M  V   ++ALG     K      G      +++ +N R FSEEQ+RQG++  IGLQ G+NK A+Q+G   +G  R I+
Sbjct:    1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWI--ILQCAEDIEHPPPGRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNV-IGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
BLAST of TCONS_00063263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL39.019e-3639.60Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2[more]
back to top