|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063326 ID=TCONS_00063326|Name=TCONS_00063326|organism=Clytia hemisphaerica|type=transcript|length=1836bp
acattttcaagatttatttTATCATTGAAAAAAGCGTCAAAAACAAACGT
CATTATTGTCATAAAAATTTAACAatcatttataaaaaataaaattttat
ataaGGTAACGTACCCAAATATAATCATATCCAtatcttttagaaaaata
ataaattcattctggggtttcaaaaatattttaaagtagTTTAAAGATGG
CATGGTTAAGTTACTGAAGCTATCCTCGGTCGAAGAAAAAAGAAAGCAGA
ACATCACAAATAAATAGGCCTGGAAATTCCAAAAAACAAATATCCACGat
cacaaaacaaaacaatattgACAAAAACTATAAggaaaaaacaaatgaaa
acatAGCAATTACCTGTAAACATCAATAGGAAAATACAAACATACAATAC
AAACAAACTGGCAAGAGACAAGGAAacacaaaagaaacaaaacaaaacaa
aaggaaaCAAATTTCTAATAACCACAATCACAAAACAATACAAGGGAACA
AGTAAAAagaggaacaagaaaaatcaaaacaaaacttctacGAAGTAACA
TCCAcgaaaaaacaaataaacaaacgcaaacaaataaacaaataagGGCT
TTAgaatagaaaaaacaaaacaggaGAAAATCTTGAAGATCacaagcaat
agataaacaaaaacaaagatgtATCGGAGTGtttaaaaaacaatgaaata
acaaaagaaagtcACATTAATAAGGTAAAACGATGAAAACGAAAAGCACG
AAAAACAACAATCAACTAACACGAAAGGATATATTCAGAACAGTTGAATT
ACAGTAGAACAATACAACAACAGATTCAACACACAAATACCAACAAAGTT
AAGAGAGgacagaaagaaaaaaacgaaaaattacgcaaaaaacaatgaaa
aacataaaaaagaaactaaaaaacaacaataacaaataaCAGTCTGCATT
CAGCTGCAgaaaaaacattgaaacaacaATCGAAAATGCACAAAAAAAGA
CAACATAACAAACTAACgaaaaataagataaataagTGCGAAGACAAAGC
TGACGAAACATAAAGAAACAAAGGAAAGgaaatatcaacaaaaacatACA
CATACAACGACAAGGAATAGACAACGTAAGCAACAAGAATGACGAAACAC
AGCAGagacaaacaaaacaaacaagtaaacaatgaaAAAGCAAAATCAAA
TCCTATGTTACATGTTACATGTACATGATAAAGTACCTTAAAATTGAAGA
CATTGATAATGACAAAACACATGATCACAGAAAGTAAACAGGAAGAAATA
AAAGATAACAATAAAAACACAACAAATCAAAAAGCAGACAAACATACAAA
AAAATGGAAACCACTGTTGACAAAAACATACACAAAGAACATTGAGACAA
AAGAGAAATCACTTGACTAataaaactaaaatgaaaaaaaagaaaatgaa
ctgAAAACAAGAACGATGGGCCATGATATAGACCAACGAAAATAAGGAAA
ACATAGATCCAAAACAATTATGCAGAAACAATTTTAACAACCAAGAAACA
AAGCACAAAACAAAACGAAACAAAACGAAGAAAAAGACAAGACAACAGGG
AATCAATGgtaaacaaaaaatgaagaacacgAAGCAAACAAAGAACAAAA
GCATTTTAATTGATGAGAAACAAACAATTTAAGACAAATACTACAAGACT
GACAAAGCTGTAGcattaaaaatacaaaacaaatataccacttGTGAACT
TAgtgtaaacaaaaaacaaaacaaatcagaCAAACACAGaaggaacaaaa
agaaaagcaaGGAAGAAGTAATGTGACAAGAAAAAT Run BLAST on NCBI transcript from alignment at scaffold_385:180825..182660 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063326 ID=TCONS_00063326|Name=TCONS_00063326|organism=Clytia hemisphaerica|type=transcript|length=1836bp|location=Sequence derived from alignment at scaffold_385:180825..182660 (Clytia hemisphaerica)
ATTTTTCTTGTCACATTACTTCTTCCttgcttttctttttgttccttCTG
TGTTTGtctgatttgttttgttttttgtttacacTAAGTTCACaagtggt
atatttgttttgtatttttaatgCTACAGCTTTGTCAGTCTTGTAGTATT
TGTCTTAAATTGTTTGTTTCTCATCAATTAAAATGCTTTTGTTCTTTGTT
TGCTTcgtgttcttcattttttgtttacCATTGATTCCCTGTTGTCTTGT
CTTTTTCTTCGTTTTGTTTCGTTTTGTTTTGTGCTTTGTTTCTTGGTTGT
TAAAATTGTTTCTGCATAATTGTTTTGGATCTATGTTTTCCTTATTTTCG
TTGGTCTATATCATGGCCCATCGTTCTTGTTTTcagttcattttcttttt
tttcattttagttttatTAGTCAAGTGATTTCTCTTTTGTCTCAATGTTC
TTTGTGTATGTTTTTGTCAACAGTGGTTTCCATTTTTTTGTATGTTTGTC
TGCTTTTTGATTTGTTGTGTTTTTATTGTTATCTTTTATTTCTTCCTGTT
TACTTTCTGTGATCATGTGTTTTGTCATTATCAATGTCTTCAATTTTAAG
GTACTTTATCATGTACATGTAACATGTAACATAGGATTTGATTTTGCTTT
ttcattgtttacttgtttgttttgtttgtctCTGCTGTGTTTCGTCATTC
TTGTTGCTTACGTTGTCTATTCCTTGTCGTTGTATGTGTatgtttttgtt
gatatttcCTTTCCTTTGTTTCTTTATGTTTCGTCAGCTTTGTCTTCGCA
cttatttatcttatttttcGTTAGTTTGTTATGTTGTCTTTTTTTGTGCA
TTTTCGATtgttgtttcaatgttttttcTGCAGCTGAATGCAGACTGtta
tttgttattgttgttttttagtttcttttttatgtttttcattgtttttt
gcgtaatttttcgtttttttctttctgtcCTCTCTTAACTTTGTTGGTAT
TTGTGTGTTGAATCTGTTGTTGTATTGTTCTACTGTAATTCAACTGTTCT
GAATATATCCTTTCGTGTTAGTTGATTGTTGTTTTTCGTGCTTTTCGTTT
TCATCGTTTTACCTTATTAATGTgactttcttttgttatttcattgtttt
ttaaaCACTCCGATacatctttgtttttgtttatctattgcttgtGATCT
TCAAGATTTTCtcctgttttgttttttctattcTAAAGCCcttatttgtt
tatttgtttgcgtttgtttatttgttttttcgTGGATGTTACTTCgtaga
agttttgttttgatttttcttgttcctctTTTTACTTGTTCCCTTGTATT
GTTTTGTGATTGTGGTTATTAGAAATTTGtttccttttgttttgttttgt
ttcttttgtgtTTCCTTGTCTCTTGCCAGTTTGTTTGTATTGTATGTTTG
TATTTTCCTATTGATGTTTACAGGTAATTGCTatgttttcatttgttttt
tccTTATAGTTTTTGTcaatattgttttgttttgtgatCGTGGATATTTG
TTTTTTGGAATTTCCAGGCCTATTTATTTGTGATGTTCTGCTTTCTTTTT
TCTTCGACCGAGGATAGCTTCAGTAACTTAACCATGCCATCTTTAAActa
ctttaaaatatttttgaaaccccagaatgaatttattatttttctaaaag
ataTGGATATGATTATATTTGGGTACGTTACCttatataaaattttattt
tttataaatgatTGTTAAATTTTTATGACAATAATGACGTTTGTTTTTGA
CGCTTTTTTCAATGATAaaataaatcttgaaaatgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063326-exon-scaffold_385-1491911889:180825..182660 | TCONS_00063326-exon-scaffold_385-1491911889:180825..182660 | Clytia hemisphaerica | exon |
| TCONS_00063326-exon-scaffold_385-1510915933:180825..182660 | TCONS_00063326-exon-scaffold_385-1510915933:180825..182660 | Clytia hemisphaerica | exon |
| TCONS_00063326-exon-scaffold_385-1575043694:180825..182660 | TCONS_00063326-exon-scaffold_385-1575043694:180825..182660 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:180825..182660 . |
Blast
The following BLAST results are available for this feature:
|
