TCONS_00063339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063339
Unique NameTCONS_00063339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063339 ID=TCONS_00063339|Name=TCONS_00063339|organism=Clytia hemisphaerica|type=transcript|length=624bp
TATTAATACAAGTTGCATAGCATTCGGGCTAAGAAACAATAAATCTTTTT
CGGTGGTACAAGAAAATAGTAATTAATACAAAAAACCAAATTGAGATCAC
AATAATATGTTCTGATATATAATCATTCAGAAATGGAGTCATAGTTGCTC
CACAAATATATGAAAAATTAACTGCCGTTCGCCGAACTCCTGACGCATAC
CCTTGAACCTCGTCTGGGACCATTTTCCCGAGTAAAGCTACAAGGAAAAC
TTGTTCCGCCGACCATCCGATTCCAGTAAAAACTGTAAACAGGGCCAAAA
ATGATATTCCTAAAATTCGAAATGTGTGAACCAGGGCTGAAATTGATATT
AATTGTAAAGCCATTATCGTAAAAGAAATTCCAATAACAATGATATACAC
ATCGGAATCGTCTTGTTTCAGCTTGTTGATAACATAAAGTGTAAGACCAA
ATGTGATGGATTCCAGATTGAAGAACATCCCTATGTACTGGACAGGGATA
TTAAATAACTGTTTGGCAATAGTCGGCATTGATATTGCGTTAAATGggtt
ctaggaaaattgcccccgagaaaactgcccccggaaaattgccccccgga
aaattgccccctaggaaaactgcc
Run BLAST on NCBI

protein sequence of TCONS_00063339-protein

>TCONS_00063339-protein ID=TCONS_00063339-protein|Name=TCONS_00063339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MPTIAKQLFNIPVQYIGMFFNLESITFGLTLYVINKLKQDDSDVYIIVIG
ISFTIMALQLISISALVHTFRILGISFLALFTVFTGIGWSAEQVFLVALL
GKMVPDEVQGYASGVRRTAVNFSYICGATMTPFLNDYISEHIIVISIWFF
VLITIFLYHRKRFIVS
Run BLAST on NCBI

transcript from alignment at scaffold_385:390887..391510

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063339 ID=TCONS_00063339|Name=TCONS_00063339|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at scaffold_385:390887..391510 (Clytia hemisphaerica)
ggcagttttcctagggggcaattttccggggggcaattttccgggggcag
ttttctcgggggcaattttcctagaaccCATTTAACGCAATATCAATGCC
GACTATTGCCAAACAGTTATTTAATATCCCTGTCCAGTACATAGGGATGT
TCTTCAATCTGGAATCCATCACATTTGGTCTTACACTTTATGTTATCAAC
AAGCTGAAACAAGACGATTCCGATGTGTATATCATTGTTATTGGAATTTC
TTTTACGATAATGGCTTTACAATTAATATCAATTTCAGCCCTGGTTCACA
CATTTCGAATTTTAGGAATATCATTTTTGGCCCTGTTTACAGTTTTTACT
GGAATCGGATGGTCGGCGGAACAAGTTTTCCTTGTAGCTTTACTCGGGAA
AATGGTCCCAGACGAGGTTCAAGGGTATGCGTCAGGAGTTCGGCGAACGG
CAGTTAATTTTTCATATATTTGTGGAGCAACTATGACTCCATTTCTGAAT
GATTATATATCAGAACATATTATTGTGATCTCAATTTGGTTTTTTGTATT
AATTACTATTTTCTTGTACCACCGAAAAAGATTTATTGTTTCTTAGCCCG
AATGCTATGCAACTTGTATTAATA

Coding sequence (CDS) from alignment at scaffold_385:390887..391510

>TCONS_00063339 ID=TCONS_00063339|Name=TCONS_00063339|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_385:390887..391510 (Clytia hemisphaerica)
ATGCCGACTATTGCCAAACAGTTATTTAATATCCCTGTCCAGTACATAGG
GATGTTCTTCAATCTGGAATCCATCACATTTGGTCTTACACTTTATGTTA
TCAACAAGCTGAAACAAGACGATTCCGATGTGTATATCATTGTTATTGGA
ATTTCTTTTACGATAATGGCTTTACAATTAATATCAATTTCAGCCCTGGT
TCACACATTTCGAATTTTAGGAATATCATTTTTGGCCCTGTTTACAGTTT
TTACTGGAATCGGATGGTCGGCGGAACAAGTTTTCCTTGTAGCTTTACTC
GGGAAAATGGTCCCAGACGAGGTTCAAGGGTATGCGTCAGGAGTTCGGCG
AACGGCAGTTAATTTTTCATATATTTGTGGAGCAACTATGACTCCATTTC
TGAATGATTATATATCAGAACATATTATTGTGATCTCAATTTGGTTTTTT
GTATTAATTACTATTTTCTTGTACCACCGAAAAAGATTTATTGTTTCTTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039689XLOC_039689Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063339-proteinTCONS_00063339-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063339-exon-scaffold_385-1491911889:390887..391510TCONS_00063339-exon-scaffold_385-1491911889:390887..391510Clytia hemisphaericaexon
TCONS_00063339-exon-scaffold_385-1510915933:390887..391510TCONS_00063339-exon-scaffold_385-1510915933:390887..391510Clytia hemisphaericaexon
TCONS_00063339-exon-scaffold_385-1575043694:390887..391510TCONS_00063339-exon-scaffold_385-1575043694:390887..391510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:390887..391510 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19684	1.47523	0.387178	0.648627	0	0.0647454	0	0	0	0.267698	0	0.11387	0.170567	0.732792	0.0970864	0	0.0641759	0.197335	0	0	0.0826552	0	0.392078	1.42582	1.10405	0.655812	0	0	0.379542	0.334814
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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