TCONS_00063364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063364
Unique NameTCONS_00063364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063364 ID=TCONS_00063364|Name=TCONS_00063364|organism=Clytia hemisphaerica|type=transcript|length=490bp
CGAACTGGTACTGCTTACACTTTCTTCACCCAAAACAATGGTAAAAATGC
TGCAGAGCTTGTATCAGTCATGCAAGAAGCAAACCAAGTAGTCCCACCCA
AGCTTCAGGATCTAGCTAAAGGACATTATGGTGGACGAAAGAGAGTGAGA
TACAGTTCTGAAAGTGACGATCATGGTGGCAAACGTTTCGCTGGAGGATC
TCGAAGCGGAGGAGGTTCACGAAGTGGTGGCTACAGCGGTGGTGGTGGTG
GCTCCCGCAGTGGAGGATACGGAGGTGGTGGCTCCTCCAGAGGATATGGT
GGAAGCAGTGGAGGAAGCTCCAGAGGCGGAAGCAGCCGTGGTGGGAGCTA
CGGTGGCGGAAGTAGTTATCAAAATGGAGGTGGAAGTAGCGGCGGTGGCC
AAAATTGGAATAACGGAGgttttgccCAATtttgaatcttcattttaaaa
atggaCCCGATTGAAAGAATTATTCTTTGACGTTCATCAG
Run BLAST on NCBI

transcript from alignment at scaffold_386:194418..195303-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063364 ID=TCONS_00063364|Name=TCONS_00063364|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at scaffold_386:194418..195303- (Clytia hemisphaerica)
CGAACTGGTACTGCTTACACTTTCTTCACCCAAAACAATGGTAAAAATGC
TGCAGAGCTTGTATCAGTCATGCAAGAAGCAAACCAAGTAGTCCCACCCA
AGCTTCAGGATCTAGCTAAAGGACATTATGGTGGACGAAAGAGAGGTATG
TCCATGGAAGGCCTCATTAAGAATTGAAGTCGATACAATTTCAAACTGGG
ATTTTGAAGATTTCTTGTTCTATTCAAACGCATGTTATAATCTGCTTTGT
ATTTCCGATTTGAGAAGCCATCGTATAATTCTCATCTGTCAGTTAAAGCT
TTTATTGTCTTAGCATTTCGTCAAAACTTAGTCTTGAAACGATAGAAAAC
TCTTCTTTTCTTTCAGTGAGATACAGTTCTGAAAGTGACGATCATGGTGG
CAAACGTTTCGCTGGAGGATCTCGAAGCGGAGGAGGTTCACGAAGTGGTG
GCTACAGCGGTGGTGGTGGTGGCTCCCGCAGTGGAGGATACGGAGGTGGT
GGCTCCTCCAGAGGATATGGTGGAAGCAGTGGAGGAAGCTCCAGAGGCGG
AAGCAGCCGTGGTGGGAGCTACGGTGGCGGAAGTAGTTATCAAAATGGAG
GTGGAAGTAGCGGCGGTGGCCAAAATTGGAATAACGGAGGTAAGTTTCTA
AACTTAAAATTTAAAACAACGCCAAATAAACTAAGTGAACACACAAAAGC
AAGTGATATTTTTACAGAGAAATAGAGCCTTGTGTTATCTAAGATGATAA
GCGCAGATGTTTCCCCAACAAGTAATCAAGTGTCCCAAAATATCAAAAAT
AACTTTGTTCTTAGGTTTTGCCCAATTTTGAATCTTCATTTTAAAAATGG
ACCCGATTGAAAGAATTATTCTTTGACGTTCATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039705XLOC_039705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063364-exon-scaffold_386-1575043694:195159..195303TCONS_00063364-exon-scaffold_386-1575043694:195159..195303Clytia hemisphaericaexon
TCONS_00063364-exon-scaffold_386-1575043694:194665..194937TCONS_00063364-exon-scaffold_386-1575043694:194665..194937Clytia hemisphaericaexon
TCONS_00063364-exon-scaffold_386-1575043694:194418..194489TCONS_00063364-exon-scaffold_386-1575043694:194418..194489Clytia hemisphaericaexon
TCONS_00063364-exon-scaffold_386-1510915933:195159..195303TCONS_00063364-exon-scaffold_386-1510915933:195159..195303Clytia hemisphaericaexon
TCONS_00063364-exon-scaffold_386-1510915933:194665..194937TCONS_00063364-exon-scaffold_386-1510915933:194665..194937Clytia hemisphaericaexon
TCONS_00063364-exon-scaffold_386-1510915933:194418..194489TCONS_00063364-exon-scaffold_386-1510915933:194418..194489Clytia hemisphaericaexon
TCONS_00063364-exon-scaffold_386-1491911889:195159..195303TCONS_00063364-exon-scaffold_386-1491911889:195159..195303Clytia hemisphaericaexon
TCONS_00063364-exon-scaffold_386-1491911889:194665..194937TCONS_00063364-exon-scaffold_386-1491911889:194665..194937Clytia hemisphaericaexon
TCONS_00063364-exon-scaffold_386-1491911889:194418..194489TCONS_00063364-exon-scaffold_386-1491911889:194418..194489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_386supercontigscaffold_386:194418..195303 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
78.7285	83.6012	174.552	193.084	236.456	180.698	73.3284	51.8639	97.2833	119.614	185.334	109.661	226.364	310.043	180.385	190.687	192.13	169.557	145.977	132.584	178.071	184.388	146.715	146.752	149.46	124.643	112.79	165.155	127.004	128.573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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