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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063396 ID=TCONS_00063396|Name=TCONS_00063396|organism=Clytia hemisphaerica|type=transcript|length=1363bp
TCCGAAGAATTCTACATGGATGACTTCCTAGGATCATTCGATTCAACAAA
TGAAGCAGTCAACACCTGTTCAAACCTTGTCAGAATCACTGCTGAAAGAG
GTTTTCGATTGACAAAGTGGATTTCAAATGATACTGAATTTTTTNTGGAT
GACTTCCTAGGATCATTCGATTCAACAAATGAAGCAGTCAACACCTGTTC
AAACCTTGTCAGAATCACCGCTGAAAGAGGTTTTCGATTGACAAAGTGGA
TTTCAAATGATACTGCATTTTTGAAAGCAATTCCAAAGGAGGATTTATCG
CCAAAAATAACAAACCACGACTTCAAGGTACTACCATCAGAAAGAACCCT
TGGAGTAAGGTGGAATCCAACCGACGATGTCTTCTTCTTCAATGTTCCAG
TCAAGGAATGTAAAGAGACAAAGAGAGGCTTGCTGAGTTTCTTGTGTTCG
ATATTCGACCCTCTTGGATTCTTGGCACCCTACATTATTGCACCAAAACT
GATGCTTCAATCCCTTTGGAAAGAAAAGGTTGGATGGGATGACACTCTTC
CAGAACGGATCCTGAAACAGTTCAAAGAATGGCAAGAAGGACTTTCGTCA
CTGACAGAAATCTCCATACCAAGATGGTTCAACTTTGCAAAGATTACAGC
TACCGAAATCGAGTTACACGTCTTTTCAGATACTGCGATGAAGGCATTTG
GAGCAGTTGCTTACTTTCGGACAATGAATGATGATGAGGTCAACTGTAGT
TTCATCATCGGTAAATCAAGGACCTATTAAAGGAAGTACAACACCACGTT
TAGAGCTGCAAGCTGCTGTCCTCGCATCCAGGATTAAAAATTGTGTCGTC
AAAGAAATGGATCTTCCCATGAACAAGACCTTCATGTGGACTGATTCAAA
GGTCACCCTCAGTTATATTCGGAAGGAGCAAAAGAGATTCTGAAATTACG
TAATGAACCGTACAAACGAAATCCGTAAAAAGACAGAAGTTAGAATTGGC
GCTTCGTACCAGGAAAACTCAACATCGCAGACATTGGAACCAAATGTTTT
GGTGTTGAAGAAACCAAGACATGGATCGATGGACCTGAATTCTTGAGGGA
GAAGGTGGTCAGGCAATTTGAGGAACCTGAGGAGGACGAAGAACTCATGG
AAATCATCACAGCTCATATCGAAATCAGAGTTGACGAATCAACAAATGTC
ATCAGTTGGGAAAGATTTTCCAGTTGGACTAAGCTGAAACGATGCTACGC
CTGGATCCTCAAGCTGAGAAGGAGATGGGTAGAGGTAAAACGTAATGGTG
AATCGTCAATCAACAAAGAAATCCTTGATGTTGAGGACCTCAATGACGCT
ACCAAGGAATTAN Run BLAST on NCBI protein sequence of TCONS_00063396-protein >TCONS_00063396-protein ID=TCONS_00063396-protein|Name=TCONS_00063396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
SEEFYMDDFLGSFDSTNEAVNTCSNLVRITAERGFRLTKWISNDTEFFXD
DFLGSFDSTNEAVNTCSNLVRITAERGFRLTKWISNDTAFLKAIPKEDLS
PKITNHDFKVLPSERTLGVRWNPTDDVFFFNVPVKECKETKRGLLSFLCS
IFDPLGFLAPYIIAPKLMLQSLWKEKVGWDDTLPERILKQFKEWQEGLSS
LTEISIPRWFNFAKITATEIELHVFSDTAMKAFGAVAYFRTMNDDEVNCS
FIIGKSRTY Run BLAST on NCBI transcript from alignment at scaffold_388:21654..23016 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063396 ID=TCONS_00063396|Name=TCONS_00063396|organism=Clytia hemisphaerica|type=transcript|length=1363bp|location=Sequence derived from alignment at scaffold_388:21654..23016 (Clytia hemisphaerica)
NTAATTCCTTGGTAGCGTCATTGAGGTCCTCAACATCAAGGATTTCTTTG
TTGATTGACGATTCACCATTACGTTTTACCTCTACCCATCTCCTTCTCAG
CTTGAGGATCCAGGCGTAGCATCGTTTCAGCTTAGTCCAACTGGAAAATC
TTTCCCAACTGATGACATTTGTTGATTCGTCAACTCTGATTTCGATATGA
GCTGTGATGATTTCCATGAGTTCTTCGTCCTCCTCAGGTTCCTCAAATTG
CCTGACCACCTTCTCCCTCAAGAATTCAGGTCCATCGATCCATGTCTTGG
TTTCTTCAACACCAAAACATTTGGTTCCAATGTCTGCGATGTTGAGTTTT
CCTGGTACGAAGCGCCAATTCTAACTTCTGTCTTTTTACGGATTTCGTTT
GTACGGTTCATTACGTAATTTCAGAATCTCTTTTGCTCCTTCCGAATATA
ACTGAGGGTGACCTTTGAATCAGTCCACATGAAGGTCTTGTTCATGGGAA
GATCCATTTCTTTGACGACACAATTTTTAATCCTGGATGCGAGGACAGCA
GCTTGCAGCTCTAAACGTGGTGTTGTACTTCCTTTAATAGGTCCTTGATT
TACCGATGATGAAACTACAGTTGACCTCATCATCATTCATTGTCCGAAAG
TAAGCAACTGCTCCAAATGCCTTCATCGCAGTATCTGAAAAGACGTGTAA
CTCGATTTCGGTAGCTGTAATCTTTGCAAAGTTGAACCATCTTGGTATGG
AGATTTCTGTCAGTGACGAAAGTCCTTCTTGCCATTCTTTGAACTGTTTC
AGGATCCGTTCTGGAAGAGTGTCATCCCATCCAACCTTTTCTTTCCAAAG
GGATTGAAGCATCAGTTTTGGTGCAATAATGTAGGGTGCCAAGAATCCAA
GAGGGTCGAATATCGAACACAAGAAACTCAGCAAGCCTCTCTTTGTCTCT
TTACATTCCTTGACTGGAACATTGAAGAAGAAGACATCGTCGGTTGGATT
CCACCTTACTCCAAGGGTTCTTTCTGATGGTAGTACCTTGAAGTCGTGGT
TTGTTATTTTTGGCGATAAATCCTCCTTTGGAATTGCTTTCAAAAATGCA
GTATCATTTGAAATCCACTTTGTCAATCGAAAACCTCTTTCAGCGGTGAT
TCTGACAAGGTTTGAACAGGTGTTGACTGCTTCATTTGTTGAATCGAATG
ATCCTAGGAAGTCATCCANAAAAAATTCAGTATCATTTGAAATCCACTTT
GTCAATCGAAAACCTCTTTCAGCAGTGATTCTGACAAGGTTTGAACAGGT
GTTGACTGCTTCATTTGTTGAATCGAATGATCCTAGGAAGTCATCCATGT
AGAATTCTTCGGA Coding sequence (CDS) from alignment at scaffold_388:21654..23016 >TCONS_00063396 ID=TCONS_00063396|Name=TCONS_00063396|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_388:21654..23016 (Clytia hemisphaerica)
TTAATAGGTCCTTGATTTACCGATGATGAAACTACAGTTGACCTCATCAT
CATTCATTGTCCGAAAGTAAGCAACTGCTCCAAATGCCTTCATCGCAGTA
TCTGAAAAGACGTGTAACTCGATTTCGGTAGCTGTAATCTTTGCAAAGTT
GAACCATCTTGGTATGGAGATTTCTGTCAGTGACGAAAGTCCTTCTTGCC
ATTCTTTGAACTGTTTCAGGATCCGTTCTGGAAGAGTGTCATCCCATCCA
ACCTTTTCTTTCCAAAGGGATTGAAGCATCAGTTTTGGTGCAATAATGTA
GGGTGCCAAGAATCCAAGAGGGTCGAATATCGAACACAAGAAACTCAGCA
AGCCTCTCTTTGTCTCTTTACATTCCTTGACTGGAACATTGAAGAAGAAG
ACATCGTCGGTTGGATTCCACCTTACTCCAAGGGTTCTTTCTGATGGTAG
TACCTTGAAGTCGTGGTTTGTTATTTTTGGCGATAAATCCTCCTTTGGAA
TTGCTTTCAAAAATGCAGTATCATTTGAAATCCACTTTGTCAATCGAAAA
CCTCTTTCAGCGGTGATTCTGACAAGGTTTGAACAGGTGTTGACTGCTTC
ATTTGTTGAATCGAATGATCCTAGGAAGTCATCCANAAAAAATTCAGTAT
CATTTGAAATCCACTTTGTCAATCGAAAACCTCTTTCAGCAGTGATTCTG
ACAAGGTTTGAACAGGTGTTGACTGCTTCATTTGTTGAATCGAATGATCC
TAGGAAGTCATCCATGTAGAATTCTTCGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063396-exon-scaffold_388-1491911889:21654..23016 | TCONS_00063396-exon-scaffold_388-1491911889:21654..23016 | Clytia hemisphaerica | exon |
| TCONS_00063396-exon-scaffold_388-1510915933:21654..23016 | TCONS_00063396-exon-scaffold_388-1510915933:21654..23016 | Clytia hemisphaerica | exon |
| TCONS_00063396-exon-scaffold_388-1575043694:21654..23016 | TCONS_00063396-exon-scaffold_388-1575043694:21654..23016 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_388 | supercontig | scaffold_388:21654..23016 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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