|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063426 ID=TCONS_00063426|Name=TCONS_00063426|organism=Clytia hemisphaerica|type=transcript|length=854bp
GAGGGGGTCaacaaattttttgtcaaactaTATGTGTATCTCATATTGGG
TTAAGAATTTGGTATTTGTGAACAAAATGGCAATAAAAATAGCTAAATTT
TTGCCTGCGGTGCCATTTTCACCCATTTcctttgaacatttttaaagctt
ttaatctATTTACAGCTGGTAAACCGcaactttaaaaaaagtctGGGTTC
gagaaattctaaaaataggaGGATATACATAGGAAGATGCATAATAAATG
GAGGAGTTCACACATTTATTGGGGATGAAGTATAAATTGAGAAATTAAGA
CCCTTTGCAGACCGAACTTAATTTTACTTTGCAAAAATGACCATAATCAA
TCAAAGGTATTGCAGAATCAACCTTTAACACTTTGTTCGTTAAAACAACT
TTAAGCTCCATATCAATCaatcacaaaaatatttttttaggctgAAGATT
CGTCTCATCCATCAGATGGTAATGACAGTACCCAAAAAGCCCCTAATGAC
ACAGACAGTAAAGAGAAATCAATTTGGCAGAACGATTTGGGTGAGGAATT
ATACTGGATCCTCATTCAATGTCTTTCCATCTTTCATCCCAAAGGTGATC
AGGTTGAAACAGATGAGTCAACCAGACCTCAAATGGAGAATTTCTAcaga
aataaagaaaacaaaagaaattttcatatttctaagaatactaaaaagtg
gAAATATGAATTTTGTGTTGATGATAATGATGTTGTTCAAAAGTTTGATG
ATGGCTTACCCAAGTTGATTATCAATAGAAAGTCAGACACAACACCTGAA
AATGCATCTCACAAAGTTGGCAACATCCACAAGAAAGTAGTTGTTCCCAT
AGAA Run BLAST on NCBI protein sequence of TCONS_00063426-protein >TCONS_00063426-protein ID=TCONS_00063426-protein|Name=TCONS_00063426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MVMTVPKKPLMTQTVKRNQFGRTIWVRNYTGSSFNVFPSFIPKVIRLKQM
SQPDLKWRISTEIKKTKEIFIFLRILKSGNMNFVLMIMMLFKSLMMAYPS Run BLAST on NCBI transcript from alignment at scaffold_389:17611..19468- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063426 ID=TCONS_00063426|Name=TCONS_00063426|organism=Clytia hemisphaerica|type=transcript|length=1858bp|location=Sequence derived from alignment at scaffold_389:17611..19468- (Clytia hemisphaerica)
GAGGGGGTCAACAAATTTTTTGTCAAACTATATGTGTATCTCATATTGGG
TTAAGAATTTGGTATTTGTGAACAAAATGGCAATAAAAATAGCTAAATTT
TTGCCTGCGGTGCCATTTTCACCCATTTCCTTTGAACATTTTTAAAGCTT
TTAATCTATTTACAGCTGGTAAACCGCAACTTTAAAAAAAGTCTGGGTTC
GAGAAATTCTAAAAATAGGAGGATATACATAGGAAGATGCATAATAAATG
GAGGAGTTCACACATTTATTGGGGATGAAGTATAAATTGAGAAATTAAGA
CCCTTTGCAGACCGAACTTAATTTTACTTTGCAAAAATGACCATAATCAA
TCAAAGGTATTGCAGAATCAACCTTTAACACTTTGTTCGTTAAAACAACT
TTAAGCTCCATATCAATCAATCACAAAAATATTTTTTTAGGCTGAAGATT
CGTCTCATCCATCAGATGGTAATGACAGTACCCAAAAAGCCCCTAATGAC
ACAGACAGTAAGTCTGATTTTAAAAATAAGATGTTTACTCCAAAGATATC
TTTTTCTCTTAACCCCTAAAAAGCAAGAACACAACGCAGCTTGCTATTAT
TTTGTATAATATTTCAGAGTTCTTGTTATGGGAGAAAATCTTTCCAATTA
AGTCAATTTTATTCAAGTTCAATGAACTCTTTTATCCTAAATTCTTCAAC
TATGTCATTTATCTCCTAACCTACAAATAATTTGTTGTAAAGGCCCAAGA
ACAGGAAGTTATTATCTTGCCTACCATAGAACTACCTGACAATCCAAAAG
TTCGCTTAACAATCAAATGCGCCAAAATCGCAAAGATCCTGATATTGCTG
CGGTACAGCCACTTTAGAATAAGTTAAAACCAAGCTGGTACATAATTTGG
GAGATTTTTGCTGAACAGTTTTAGTGAGCGGCCAGCTTGGTTCATATCTC
AAAATATTCGGTAATTTGCATTTTCAGCAGAAATGTTTTCATTTGATTGT
TGAGTGAACTTTTGTTTCTACGGTATACCTTAAGGGAACTATTTTTTACT
ATTTTTGTGGTGCACTGATTTGAGATCTTTTGCAGATTTTTGGCTTGGGA
AAAAACTAAGCCATTCTGTAGATTATTTAGTCATTATTTTTAGCATTTGA
AAAATTTTACAACGGCTCAAGATTAAATTGCGGTTTGGGGCCAAATCTGA
ACAAAAACGCTAAATTCAGTTCCCGCCTGTTCCCGAAAGAATTAGTTCCC
TTAGTAAGGTAAGTTTATGTTAGTCAGGCTGCATCATTTAAGGTGTGCGA
TAGCACGTGCACACCTCCACACACACCTAAAATCTCTGAGGGGTGTGGTC
AATCACGCCATTAATCCAAATTCACTGCTAAAGTTGTACATAGCATTCCT
TATCACACCCCTAAATTCCAAAAATTAAAGTTCGGAGTTTGATTGACCAC
ACGCCTGCATTTTTCAAATGACAAAGCCCGGTTAGTTTATTAACTTGTTT
TTTGGTTTCAGGTAAAGAGAAATCAATTTGGCAGAACGATTTGGGTGAGG
AATTATACTGGATCCTCATTCAATGTCTTTCCATCTTTCATCCCAAAGGT
GATCAGGTTGAAACAGATGAGTCAACCAGACCTCAAATGGAGAATTTCTA
CAGAAATAAAGAAAACAAAAGAAATTTTCATATTTCTAAGAATACTAAAA
AGTGGAAATATGAATTTTGTGTTGATGATAATGATGTTGTTCAAAAGTTT
GATGATGGCTTACCCAAGTTGATTATCAATAGAAAGTCAGACACAACACC
TGAAAATGCATCTCACAAAGTTGGCAACATCCACAAGAAAGTAGTTGTTC
CCATAGAA Coding sequence (CDS) from alignment at scaffold_389:17611..19468- >TCONS_00063426 ID=TCONS_00063426|Name=TCONS_00063426|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_389:17611..19468- (Clytia hemisphaerica)
GTAAAGAGAAATCAATTTGGCAGAACGATTTGGGTGAGGAATTATACTGG
ATCCTCATTCAATGTCTTTCCATCTTTCATCCCAAAGGTGATCAGGTTGA
AACAGATGAGTCAACCAGACCTCAAATGGAGAATTTCTACAGAAATAAAG
AAAACAAAAGAAATTTTCATATTTCTAAGAATACTAAAAAGTGGAAATAT
GAATTTTGTGTTGATGATAATGATGTTGTTCAAAAGTTTGATGATGGCTT
ACCCAAGTTGAATGGTAATGACAGTACCCAAAAAGCCCCTAATGACACAG
ACAGTAAAGAGAAATCAATTTGGCAGAACGATTTGGGTGAGGAATTATAC
TGGATCCTCATTCAATGTCTTTCCATCTTTCATCCCAAAGGTGATCAGGT
TGAAACAGATGAGTCAACCAGACCTCAAATGGAGAATTTCTACAGAAATA
AAGAAAACAAAAGAAATTTTCATATTTCTAAGAATACTAAAAAGTGGAAA
TATGAATTTTGTGTTGATGATAATGATGTTGTTCAAAAGTTTGATGATGG
CTTACCCAAGTTGAATGGTAATGACAGTACCCAAAAAGCCCCTAATGACA
CAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063426-exon-scaffold_389-1575043694:18962..19468 | TCONS_00063426-exon-scaffold_389-1575043694:18962..19468 | Clytia hemisphaerica | exon |
| TCONS_00063426-exon-scaffold_389-1575043694:17611..17957 | TCONS_00063426-exon-scaffold_389-1575043694:17611..17957 | Clytia hemisphaerica | exon |
| TCONS_00063426-exon-scaffold_389-1510915933:18962..19468 | TCONS_00063426-exon-scaffold_389-1510915933:18962..19468 | Clytia hemisphaerica | exon |
| TCONS_00063426-exon-scaffold_389-1510915933:17611..17957 | TCONS_00063426-exon-scaffold_389-1510915933:17611..17957 | Clytia hemisphaerica | exon |
| TCONS_00063426-exon-scaffold_389-1491911889:18962..19468 | TCONS_00063426-exon-scaffold_389-1491911889:18962..19468 | Clytia hemisphaerica | exon |
| TCONS_00063426-exon-scaffold_389-1491911889:17611..17957 | TCONS_00063426-exon-scaffold_389-1491911889:17611..17957 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_389 | supercontig | scaffold_389:17611..19468 - |
Blast
The following BLAST results are available for this feature:
|
