TCONS_00063429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063429
Unique NameTCONS_00063429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3113

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063429 ID=TCONS_00063429|Name=TCONS_00063429|organism=Clytia hemisphaerica|type=transcript|length=3113bp
tgaaactaTACTGCTTATTTAGCCATTATTGTCATCCCATAGTGGATTTT
AAACTTATCATTGACTACAAAAGTGTGTTGTTTGTGCGTGATGAACTGCA
CACTGTCACTACCTATTTGGTGTTTTTGGAATTGATTTGCATCTTTGAAT
ATGGATATAATTGAAGCTGCTCCTGAACCAACTCCAACTCCAACTGCTAA
TAATGATAAAGTCAAACTTTGTGGAAAGAAAAGGAACTGCTCCAAGCCAA
GTGGTCATGCGTCAAGATGTGATTCGAATCGTAAAATCACTAGCCTGTCT
TTTACAACCAGGAACCTCCAGGCAGCCTATCGAAATGTAAAAGAGAAAAT
TATAAGCTTGACATCAACTGCTGGACAAAAAGaggCGAAACTCAAGAACC
TGGATGTTGAAATTTGTAAAAAGGAgcaagaaattttgaataaaagtcAG
CAAAAGGAGGAACTGGAGGAAAACGTGAATGCCTTAGGCAAAGAATCCGA
TAAACTTCGTACACTGTTTGAGCAAACCGAACAAGGGCGTAAAAGGATAG
AGGGTGTACcaacaacaaacaaaatgaTTAATGACAATTTCAGTTCAACT
AGATATCGAAGGCGAAAAAAGACAAAGGCAATGCTCGAATATTACCATGG
TGGAGCTGAAGGGGCAAATTATGGAGCATGGGACTTTCTTCAAAGCAATG
CCTCATCAAATAtgatggaaaaactttttcttaacCACAAGcgtggaaaa
tttttgcaaacATTATATGGAAAATTTAAGGTCAATGATAAAGGAGCTTT
GGACAGAGCCATTGCCTTGAAATATAGCACCTTTCAGTCAAGGCGTAAAT
ATACTTTCCAATGCAAAATTCAGAAATCAATGTATGATCCAAGTAGTGAA
ActtttggcaaaatttcaaTGACCTATGGTGAATACAATTTAGATCTAAA
TACGAAATCGATTAGTCATCAATCTGTTGACAAATTTGTTAAAGGTCTAA
ACATTGGTGAATTACACCAAATTGAAGGATACTCTGGTGTGACCCGTACT
TTGACAGCTCTGACTACTATGATCGTTGACTTAAATCTTAAAGTAAATTC
TCGAAGAGAGAACCTGAAATGGTTCAAGGACAATGTGAATCATTTTATTG
TTGAGTTTTCAGATGATGGTGCCCCAGAATCATCTGAGCGAACAATGACA
ATTGGTACACTTTCTCTCTGGAATTTCGGTAACCGTATTAGAAGTCGTGA
TTACCATTATCTCCTTCACATGTTAAGCGCTTCAGAAAAAGACCGGGTAT
GCGAGTATCTATGGCAACAACATTGCGAGGAAATGAAGTTGATAGAGGGT
AACATCCTCATGATAAACGACACCCAATGCACTTTTGAGTTTGTACCATC
AGCTGATACATCATGGATCTGCTTTGCCGCCAATGTGCTCGGATGTAGTG
CCACATACCCTTCGCCCTTTGCCAATGTTCACAAGGGTAGTTTAACAGAA
ATGGGTGGTTCCATTGGTACAAAAAAGGAAGACCGATGGCAAATACCAAC
CACCAAATCCCGAGATGCTGAGCTGACAACCCTGAATGAATTTCGTTTAA
AAAACAATCACCCTAATCCGGAGGTAGCTCATCAAAAGGAGCTTGATTTC
ATGGCAGAGAATGGCTTGAGACAAATAGGCCCCCCACGAATCGGAGATTT
TGCAGACAGGATAGCACCGGAACCAATGCATCTTGAGATAAATTGTTGGA
AGCATGTGTTGGATGTAATCTACAAAGAAGCAGTCCGACGTgacaaattt
gaagattttattgACGCCCTCAAAAGTCCACAGAAGATTGTTAATGGAAC
AGAACAGAAAACCGGATGTGGGCTTGCTTATATTGCTAAAGAAATTGTGA
AACACCATGATGCAGAAGAAAACAAGCTTAAGCGTTTAGAAGTTCGCCTC
ATTGGATCTCAAGCAATCTCTTTGGCTCAATACAGATTGGTTGATTCCCT
TTGCTCTCCAGATGAAACACCAACACAACAGATCAAACGTTTAGCGTTGG
CCAAAATTTGCGAGACCCTCCGTGATATTGGCTCACTCATTAATCGCATT
GATGTGGGTTTCAATAACTATCCTGAAGTAATACGAGACCTTTGCACAAT
TTTTTTCAACATGTTTTCCCTATTCTTCGAACAACACTGCCAGCTAACGG
TTTGGACCATGGGTTATGTTATACCGTACCATGTGCAGAATGTCTTTGAA
AAGTATGGGGTTGGTTATGGGATAATGAGTATGCAGGGGAAAGAGGCAAA
GCACGCGGCCTTAAAACAAGAGCTTCGTAATAATACAAATCGAAGCATTG
CTCAAGACGCGACAGGAAAGTGGCATCAAATCGCTCGATCGAACTACATT
CGGAAATTTTATCTCCCGTATCATTTTCCGGTATCATCAAATTCATACCA
TTCTCATTTTCGACCGAGGAAAGCTTTCCCAACGGATGGAGAAATCGAAT
GTGCTTGTTCCCGCACAATTGATGAGGATTTAACTTCATGCAAAGTATGT
ATAGAGAGTATAGAGCTGATGGAATGTGCTAAACTAGCAAAATTAACTGA
GTCAGTGACAAAGAAACTGAAGCCTATCGAATGCGTAACCTGTGGGTTAC
GTTTTGCCGACAAGTTAACACTTAAAAACCATGTCGGAACAAATCATATT
TTAAAGGATGTTCTGAATCCTAAAAAGATGAACGtcgaagaattgaaaaa
tgcaCTGAAGTCTCGCAATATGAATACAACTGGTAAAAAGACTGAACTTG
TAAAAAGGTTGGAAGGTCGACTGACAACCGAAGTGTaacattttttaggc
ttaaattttcttacgatgttcttaaataCGGTTAGTTCCTTTACTTAAGa
acttaaaatggcttaaaatatgttaaaaacccttaaaatcagtactttat
tagtaatttttgaaatctgaggctcagctTGTTCTTACTTTGTTCTTAGG
TTtcggccaaatttcagcctcgtgttcttataaaattgttcttataaaaa
aacgtgtatctggGCTTAAACTTCGTTTGCCAGCTGTTTGAGTGTGTCGA
TAATTTGACGACg
Run BLAST on NCBI

transcript from alignment at scaffold_389:69470..74330-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063429 ID=TCONS_00063429|Name=TCONS_00063429|organism=Clytia hemisphaerica|type=transcript|length=4861bp|location=Sequence derived from alignment at scaffold_389:69470..74330- (Clytia hemisphaerica)
TGAAACTATACTGCTTATTTAGCCATTATTGTCATCCCATAGTGGATTTT
AAACTTATCATTGACTACAAAAGTGTGTTGTTTGTGCGTGATGAACTGCA
CACTGTCACTACCTATTTGGTGTTTTTGGAATTGATTTGCATCTTTGAAT
ATGGATATAATTGAAGCTGCTCCTGAACCAACTCCAACTCCAACTGCTAA
TAATGATAAAGTCAAGTAAGTAAAGTGTTTGAATGCTATTATCTTTCTCG
TGTATATAATAAATAATGTTATTTTTATATGTTTCAAAAAATCATTTCTT
TTTGCACCCTATAGACGTTATTTTAAAGAGGATGTTCTGTGGAATAAAAA
AGTAGTCCATCAGTTATTATGTAATGAAAAATACCTCAAAGCAGATGGTC
GGCCGCAGTGACCACGCTGAGATTTTTTTCTCTACGTGGCTGTTTATATA
TATATATAAATATTCAACAGGACGTCCTCTTTGTAAAAACGTCAATTCAA
AGTAAATGTTTTCAAAATTTATGTTTTTTAAGTCTAATCACGAAATTGAT
TTTATAATTTTTCTTCCTCGACAGACTTTGTGGAAAGAAAAGGAACTGCT
CCAAGCCAAGTGGTCATGCGTCAAGATGTGATTCGAATCGTAAAATCACT
AGCCTGTCTTTTACAACCAGGAACCTCCAGGCAGCCTATCGAAATGTAAA
AGAGAAAATTATAAGCTTGACATCAACTGCTGGACAAAAAGGTAAAAAAT
TATTTCCCAAAAGCATTTGTCATATTGAATTAGAAATTTTTTAATTATAA
ATTCTTCTTTGTTGGTAAAATGCCTTCACTTTTCCTTAATCACTGTTTCA
GATTTGAAAAGCTTCTGATGTGCTCCTCTTTGAGGTTTTATTACCTTTAC
ACCGAATAGATGATTCCTTGTTATTTTAAAAGATTTTGATTGGTGCGCAC
TAGTTTGGATTCTGGACGTGTACGTAATGAATAGTCCTTTAGGCAATTGC
GACGATCTATTAAATAAATAATTCCACCGGCAATAATTATTCGCATACCT
ACTTCCACCAGCTTAAATTATGATACCTCCATACTCCAATGGATGCAAGT
GAAACCAACGTGAAATTTCATATTACCTACATATAAGTTTTGTTCAAATT
GGCAGGCTAACAACTCTCTCTTAATAACATGCGGTAATGTTGCAAATTTT
CCTGTGTGGCGTGCTATGAAGTATTTATACAACTTTAGGTTCTAATTTTC
CGTAATACAGAACAAATGATTTCCAGCCCGGAATTAATGTGCGGAACGAT
GCAAATAATTATTGCTGGTGGAATACTTATTCAATAGACCCTCGCGATCA
CCTAAAGGAGTATTGCGTCCCTTTATTCTATAAGTAAGATTAATACTGAA
GTTTTATAATTTTTTTTAGAGGCGAAACTCAAGAACCTGGATGTTGAAAT
TTGTAAAAAGGAGCAAGAAATTTTGAATAAAAGTCAGCAAAAGGAGGAAC
TGGAGGAAAACGTGAATGCCTTAGGCAAAGAATCCGATAAACTTCGTACA
CTGTTTGAGCAAACCGAACAAGGGCGTAAAAGGATAGAGGGTGTACCAAC
AACAAACAAAATGATTAATGACAATTTCAGTTCAACTAGATATCGAAGGC
GAAAAAAGACAAAGGCAATGCTCGAATATTACCATGGTGGAGCTGAAGGG
GCAAATTATGGAGCATGGGACTTTCTTCAAAGCAATGCCTCATCAAATAT
GATGGAAAAACTTTTTCTTAACCACAAGCGTGGAAAATTTTTGCAAACAT
TATATGGAAAATTTAAGGTCAATGATAAAGGAGCTTTGGACAGAGCCATT
GCCTTGAAATATAGCACCTTTCAGTCAAGGCGTAAATATACTTTCCAATG
CAAAATTCAGAAATCAATGTATGATCCAAGTAGTGAAACTTTTGGCAAAA
TTTCAATGACCTATGGTGAATACAATTTAGATCTAAATACGAAATCGATT
AGTCATCAATCTGTTGACAAATTTGTTAAAGGTCTAAACATTGGTGAATT
ACACCAAATTGAAGGATACTCTGGTGTGACCCGTACTTTGACAGCTCTGA
CTACTATGATCGTTGACTTAAATCTTAAAGTAAATTCTCGAAGAGAGAAC
CTGAAATGGTTCAAGGACAATGTGAATCATTTTATTGTTGAGTTTTCAGA
TGATGGTGCCCCAGAATCATCTGAGCGAACAATGACAATTGGTACACTTT
CTCTCTGGAATTTCGGTAACCGTATTAGAAGTCGTGATTACCATTATCTC
CTTCACATGTTAAGCGCTTCAGAAAAAGACCGGGTATGCGAGTATCTATG
GCAACAACATTGCGAGGAAATGAAGTTGATAGAGGGTAACATCCTCATGA
TAAACGACACCCAATGCACTTTTGAGTTTGTACCATCAGCTGATACATCA
TGGATCTGCTTTGCCGCCAATGTGCTCGGATGTAGTGCCACATACCCTTC
GCCCTTTGCCAATGTTCACAAGGGTAGTTTAACAGAAATGGGTGGTTCCA
TTGGTACAAAAAAGGAAGACCGATGGCAAATACCAACCACCAAATCCCGA
GATGCTGAGCTGACAACCCTGAATGAATTTCGTTTAAAAAACAATCACCC
TAATCCGGAGGTAGCTCATCAAAAGGAGCTTGATTTCATGGCAGAGAATG
GCTTGAGACAAATAGGCCCCCCACGAATCGGAGATTTTGCAGACAGGATA
GCACCGGAACCAATGCATCTTGAGATAAATTGTTGGAAGCATGTGTTGGA
TGTAATCTACAAAGAAGCAGTCCGACGTGACAAATTTGAAGATTTTATTG
ACGCCCTCAAAAGTCCACAGAAGATTGTTAATGGAACAGAACAGAAAACC
GGATGTGGGCTTGCTTATATTGCTAAAGAAATTGTGAAACACCATGATGC
AGAAGAAAACAAGCTTAAGCGTTTAGAAGTTCGCCTCATTGGATCTCAAG
CAATCTCTTTGGCTCAATACAGGTAACTTAATTTAATAACTTTAATCTAG
TGTCTTATGAAGTTTTTTTATGGTGTAAAAACTGAAAAGTAGGTTTTAGG
AAATTGACCTTAGATGAATTTGTGTCAACCATTCTTTACGTAAATGTTAA
TGTTTTTTCTTAAAAGGGAGTAATTTAAACTACCCGAAAACGCATGAGAG
GTCCAGAACAGAAGAAAATTCTTCTGACAGAATCATCTCTTCGCTTATCA
TTTATCTATTACTTATTGTCTTATAGACAGTAATAGATTAGCTTTGTCAT
AGCTATGTTTTAGATTGCACCCCTTTTTGATAGGAGGGATGCCAAATTTT
TGAAGGGCCTTTGCAGGGTGTACTAAGATTTGCCAAAAACTAGGGGGAAT
CAAATAAGAAAGGGGGGGGTCGGAAAGTTTGGTTTTAACTTTATCGTATA
CAAATGGTCACTGTAGTCTGTATTAAAGTAAAAATGTGTACCATCAAAAT
TGTTGTTAGAAATGCTAGTTATAATTTTTATTGTAAAATTTTTGTCTTCA
ACTGTAAACATTTGGTAGTCTTTGATCACTTTGGTAGCGCATAGAGCGAG
TTTGATTTCTGCAAAAAGGAGGGAGGGTAAAGGTTTCATTTCAGAAGGGG
ATGGGTATATAGGGGGATAGAACAAGCCTAGTGGGTTCAAACCCCTCTGC
AAACTATTTATGTATGGTTTTATTCAGTTTCAGATTGGTTGATTCCCTTT
GCTCTCCAGATGAAACACCAACACAACAGATCAAACGTTTAGCGTTGGCC
AAAATTTGCGAGACCCTCCGTGATATTGGCTCACTCATTAATCGCATTGA
TGTGGGTTTCAATAACTATCCTGAAGTAATACGAGACCTTTGCACAATTT
TTTTCAACATGTTTTCCCTATTCTTCGAACAACACTGCCAGCTAACGGTT
TGGACCATGGGTTATGTTATACCGTACCATGTGCAGAATGTCTTTGAAAA
GTATGGGGTTGGTTATGGGATAATGAGTATGCAGGGGAAAGAGGCAAAGC
ACGCGGCCTTAAAACAAGAGCTTCGTAATAATACAAATCGAAGCATTGCT
CAAGACGCGACAGGAAAGTGGCATCAAATCGCTCGATCGAACTACATTCG
GAAATTTTATCTCCCGTATCATTTTCCGGTATCATCAAATTCATACCATT
CTCATTTTCGACCGAGGAAAGCTTTCCCAACGGATGGAGAAATCGAATGT
GCTTGTTCCCGCACAATTGATGAGGATTTAACTTCATGCAAAGTATGTAT
AGAGAGTATAGAGCTGATGGAATGTGCTAAACTAGCAAAATTAACTGAGT
CAGTGACAAAGAAACTGAAGCCTATCGAATGCGTAACCTGTGGGTTACGT
TTTGCCGACAAGTTAACACTTAAAAACCATGTCGGAACAAATCATATTTT
AAAGGATGTTCTGAATCCTAAAAAGATGAACGTCGAAGAATTGAAAAATG
CACTGAAGTCTCGCAATATGAATACAACTGGTAAAAAGACTGAACTTGTA
AAAAGGTTGGAAGGTCGACTGACAACCGAAGTGTAACATTTTTTAGGCTT
AAATTTTCTTACGATGTTCTTAAATACGGTTAGTTCCTTTACTTAAGAAC
TTAAAATGGCTTAAAATATGTTAAAAACCCTTAAAATCAGTACTTTATTA
GTAATTTTTGAAATCTGAGGCTCAGCTTGTTCTTACTTTGTTCTTAGGTT
TCGGCCAAATTTCAGCCTCGTGTTCTTATAAAATTGTTCTTATAAAAAAA
CGTGTATCTGGGCTTAAACTTCGTTTGCCAGCTGTTTGAGTGTGTCGATA
ATTTGACGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039754XLOC_039754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063429-exon-scaffold_389-1575043694:74116..74330TCONS_00063429-exon-scaffold_389-1575043694:74116..74330Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1575043694:73590..73756TCONS_00063429-exon-scaffold_389-1575043694:73590..73756Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1575043694:71309..72911TCONS_00063429-exon-scaffold_389-1575043694:71309..72911Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1575043694:69470..70597TCONS_00063429-exon-scaffold_389-1575043694:69470..70597Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1510915933:74116..74330TCONS_00063429-exon-scaffold_389-1510915933:74116..74330Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1510915933:73590..73756TCONS_00063429-exon-scaffold_389-1510915933:73590..73756Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1510915933:71309..72911TCONS_00063429-exon-scaffold_389-1510915933:71309..72911Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1510915933:69470..70597TCONS_00063429-exon-scaffold_389-1510915933:69470..70597Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1491911889:74116..74330TCONS_00063429-exon-scaffold_389-1491911889:74116..74330Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1491911889:73590..73756TCONS_00063429-exon-scaffold_389-1491911889:73590..73756Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1491911889:71309..72911TCONS_00063429-exon-scaffold_389-1491911889:71309..72911Clytia hemisphaericaexon
TCONS_00063429-exon-scaffold_389-1491911889:69470..70597TCONS_00063429-exon-scaffold_389-1491911889:69470..70597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_389supercontigscaffold_389:69470..74330 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0686927	0.066907	0.0653077	0.0251374	0.881216	0	0.592523	0	0	0.280357	0.762645	1.03331	0.483568	0.0980854	0	1.333e-06	0	0.320615	3.62568e-08	0.473051	0.167588	0	0.144854	0.121379	0.368569	0.462682	0.158162	0	0.101815	0.0506229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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