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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063431 ID=TCONS_00063431|Name=TCONS_00063431|organism=Clytia hemisphaerica|type=transcript|length=1979bp
ctttttaaaaagaaatttacttAAAACGAAGGTCTcgtgaaaacaaaaat
tcattttataaaatcaTTGCGGACTGTTGCGGACCTTATTTGATGTTTTC
CATTTCAAACGAGCTGAAGTTTGCGAAGAACACAAAACAAGAAAGGATTT
TTGTTATTTATGTTAAGATCGCTCAATATTATTTACATTTTCCAAAAtgg
caaaattaaaaatgtcaatAAAAATCTAGACGTCTCTGTTAAGCTCTTTC
AATCAATTTAGTTCGTTAAGTTTGTTTCAAATAAATACAAACCCTCTATT
GTTCTATTGCTATAGAGATCTAAGTTATCCCATTCACATAAGGTATGAAG
TGCGAAAATTCTTCACGGCAACACAGCTTTACGAGTTTTGTCATGAAGCA
AATATAGGATCCCTTCAATTCAACGGTGAAGCTCCAATAAATTTGTCACT
AGCTACTTTGTTTACTTAAAAGCGCCTTGGTCCGCCGCCAAAACTACGGC
GATCGCTACCGAAACTGTCTCTACGCCCCATTCGATCTCCTCCTCCACGT
TGTCGATCACGAGGCGGTCCTCGGCGATCTCCTCCTGGTGGTCCTCGTGC
GTCGCTGAATCGATCTCCACGATCTCTCTGTCGGTCACGTGGTGGACCAC
GGTCATCAAAATCACGCCCGCCGCCACCTCGACGCCCACCACCATAACCA
CCTAAACGATCATCTCTGTCTCCTCTATCAAAGCCACCACGTGGAGAACG
AGCTCTACCGCCGCCGTAAGGTGATCGATCACGCATTCCTCCTTTTGGTG
GCGAACGATACCTTGGATTACCTCCGCCAGGCCGGCCGNCCGCCACCTCG
ACGCCCACCACCATAACCACCTAAACGATCATCTCTGTCTCCTCTATCAA
AGCCACCACGTGGAGAACGAGCTCTACCGCCACCGTAAGGCGATCGATCA
CGCATTCCTCCTTTTGGTGGCGAACGATACCTTGGATTACCTCCGCCAGG
CCGGCCACCACCGCCACCGCCTCCTTGGCGAGGACCAGACCCTTTGGCCC
ACTCAACAGTCATCACAGATCCCATAAGGCGTTGGTCATTTTCTTTCATC
ATCGCTGTTTCTGCATCACGTCGTTCATCATATTGAATGAATccgaaatt
tttctttaaatcacATCGAAGAATTTTTCCGTATCTTCCGAAGACATTCT
CCAAATCACGAGTGCGGGTATTAGGGTTGAGATTTCCAATAAACAACTCC
GTACTCATTCTTGGACTAGATAGAAGAGAGAAGTTTAGGGTTAAGGATAT
TGGGTGTAGGAACTTATTGTGCAACGTTCGAAAGAGTGCTGTTAATGGTA
TTCGgagaaaaatgctaaaataccaGGGTTATCTTTGATTTCGATGATTT
GATAAGAAGTAATTGGGTCGAGTTTTCTTTGGATAAAGGAATTGGATTCC
TATTCCAGTNCCAATAAACAACTCCGTACTCATTCTTGGACTAGATAGAA
GAGAGAAGTTTAGGGTTAAGGATATTGGGTGTAGGAACTTATTGTGCAAC
GTCCGAAAGAGTGCTGTTAATGGTATTCGgagaaaaatgctaaaatacca
GGGTACTCTTTGATTTCGATGATTTGATAAGAAGTAATTGGGTCGAGTTT
TCATTGGATAAAGGAATTGGATCCCTATTCCAGCAGTGGCTCGTCTGAGA
TAGTGCCATGTTTATTACACTGACAGACGATATCATACGCAATGGTATTA
TGGTAGGTAGTATACAACAAATTAAAGTCTGTGATAGTAAAAATGTATGG
ATGGGTCAAATAAGGGTATAGTCTGAAATCCATCATGATGGTCGTTGGTG
CTGTTCGATCGACTGGTTGATCTTTCTTGGTGTTTTCTTTAGTCGGTGTT
GTCTGTCGAAGATTTGTATCTTTAGCTGATTCCTTGTTATTGTAAGGCGG
CTACTGCTGTGTGATAACACGTGTTTGNN Run BLAST on NCBI transcript from alignment at scaffold_389:82182..85569- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063431 ID=TCONS_00063431|Name=TCONS_00063431|organism=Clytia hemisphaerica|type=transcript|length=3388bp|location=Sequence derived from alignment at scaffold_389:82182..85569- (Clytia hemisphaerica)
CTTTTTAAAAAGAAATTTACTTAAAACGAAGGTCTCGTGAAAACAAAAAT
TCATTTTATAAAATCATTTAGTAGGGGGAATTTTGTTCGATTTTTTGGAA
TCGCTTGACTGTTTTGTTAGAAGCACTTGTTATACATTTTTGGAAAGCTA
AGGGGTAGGGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAGGGGTAGGGGAATCGAAATTACTATG
TTTCCAATTTTTTTTCGGACACTTTGGTGTGATTTTTGGACAAATATGAC
GGTCTCAGGCAAAAATCATACGGTTAAAAATTAATGAAAATTTTAGCTCG
AGAAAACGGAGACCTGTTGTATATTTTTGGAAAGCTCGTAAAAAATTAAG
ATTAGAGATATATTGCAAGTATAGGTGATTTCTGTACATAACTCGAGATA
TTAACTCTTGAAAACCGTGTTTTTCAGCCAGAAACAGCTATTTTGTCCAG
TTTTTGCGCTTTTTGAAGCTCAATATCTCGAGTTAGGTATTGAAATCACC
TATACTTGCAATATATCTCTAATCCTAATTTTATAAGAGCTTTCCAAAAA
TATACAACAGGTCTCCGTTTTCTCGAGCTAAAATTTTCATTAATTTTTAA
CCCTATGATTTTTTCCTGAGACCGTCATATTTGTCTGAAAATCACACCAA
AGTGTCCGAAAAAAAATTGGAAACATAGTAATTTTGATTCCCCTACCCCT
TAGCTTTCCAAAAATGTATAACAAGTGCTTCTAACAAAACAGTCGAGCGA
TTTTACAAAATGCCCTCTACTACATTGCGGACTGTTGCGGACCTTATTTG
ATGTTTTCCATTTCAAACGAGCTGAAGTTTGCGAAGAACACAAAACAAGA
AAGGATTTTTGTTATTTATGTTAAGATCGCTCAATATTATTTACATTTTC
CAAAATGGCAAAATTAAAAATGTCAATAAAAATCTAGACGTCTCTGTTAA
GCTCTTTCAATCAATTTAGTTCGTTAAGTTTGTTTCAAATAAATACAAAC
CCTCTATTGTTCTATTGCTATAGAGATCTAAGTTATCCCATTCACATAAG
GTATGAAGTGCGAAAATTCTTCACGGCAACACAGCTTTACGAGTTTTGTC
ATGAAGCAAATATAGGATCCCTTCAATTCAACGGTGAAGCTCCAATAAAT
TTGTCACTAGCTACTTTGTTTACTTAAAAGCGCCTTGGTCCGCCGCCAAA
ACTACGGCGATCGCTACCGAAACTGTCTCTACGCCCCATTCGATCTCCTC
CTCCACGTTGTCGATCACGAGGCGGTCCTCGGCGATCTCCTCCTGGTGGT
CCTCGTGCGTCGCTGAATCGATCTCCACGATCTCTCTGTCGGTCACGTGG
TGGACCACGGTCATCAAAATCACGCCCGCCGCCACCTCGACGCCCACCAC
CATAACCACCTAAACGATCATCTCTGTCTCCTCTATCAAAGCCACCACGT
GGAGAACGAGCTCTACCGCCGCCGTAAGGTGATCGATCACGCATTCCTCC
TTTTGGTGGCGAACGATACCTTGGATTACCTCCGCCAGGCCGGCCGNCCG
CCACCTCGACGCCCACCACCATAACCACCTAAACGATCATCTCTGTCTCC
TCTATCAAAGCCACCACGTGGAGAACGAGCTCTACCGCCACCGTAAGGCG
ATCGATCACGCATTCCTCCTTTTGGTGGCGAACGATACCTTGGATTACCT
CCGCCAGGCCGGCCACCACCGCCACCGCCTCCTTGGCGAGGACCAGACCC
TTTGGCCCACTCAACAGTCATCACAGATCCCATAAGGCGTTGGTCATTTT
CTTTCATCATCGCTGTTTCTGCATCACGTCGTTCATCATATTGAATGAAT
CCGAAATTTTTCTTTAAATCACATCGAAGAATTTTTCCGTATCTTCCGAA
GACATTCTCCAAATCACGAGTGCGGGTATTAGGGTTGAGATTTCCAATAA
ACAACTCCGTACTCATTCTTGGACTAGATAGAAGAGAGAAGTTTAGGGTT
AAGGATATTGGGTGTAGGAACTTATTGTGCAACGTTCGAAAGAGTGCTGT
TAATGGTATTCGGAGAAAAATGCTAAAATACCAGGGTTATCTTTGATTTC
GATGATTTGATAAGAAGTAATTGGGTCGAGTTTTCTTTGGATAAAGGAAT
TGGATTCCTATTCCAGTNCCAATAAACAACTCCGTACTCATTCTTGGACT
AGATAGAAGAGAGAAGTTTAGGGTTAAGGATATTGGGTGTAGGAACTTAT
TGTGCAACGTCCGAAAGAGTGCTGTTAATGGTATTCGGAGAAAAATGCTA
AAATACCAGGGTACTCTTTGATTTCGATGATTTGATAAGAAGTAATTGGG
TCGAGTTTTCATTGGATAAAGGAATTGGATCCCTATTCCAGCAGTGGCTC
GTCTGAGATAGTGCCATGTTTATTACACTGACAGACGATATCATACGCAA
TGGTATTATGGTAGGTAGTATACAACAAATTAAAGTCTGTGATAGTAAAA
ATGTATGGATGGGTCAAATAAGGGTATAGTCTGAAATCCATCATGATGGT
CGTTGGTGCTGTTCGATCGACTGGTTGATCTTTCTTGGTGTTTTCTTTAG
TCGGTGTTGTCTGTCGAAGATTTGTGTATTTACAGGACAAAATGAGAAAT
TACACATACAGTAGAAGTATTATCAGGTATTAGTGGAAATGAGTCCAATG
ACCTAACCTTTAAACATTCAATCATCCATAAAATTTTAATCTTTTGGAAA
ATATCAAATGTTTTGAGTACTCTTAGGTTCNACAGACGATATCATACGCA
ATGGTATTATGGTAGGTAGTATACAACAAATTAAAGTCTGTGATAGTAAA
AATGTATGGATGGGTCAAATAAGTGTATAGTCTGAAATCCATCATGATGG
TCGTTGGTGCTGTTCGATCGACTGGTTGATCTTTCTTGGTGTTTTCTTTA
GTCGGCGTTGTCTGTCGAAGATTTGTGTATTTACAGGACAAAATGAGAAA
TTACACATACAGTAGAAGTATTATCAGGTATTAGTGGAAATGAGTCTAAT
GACCTAACCTTTAAACATTCAATCATCCATAAAATTTTAATCTTTTGGAA
AATATCAAATGTTTTGAGTACATGACAAAAATGCTTCAAAAATAGGAAAT
GCCCTCTTCAGACTTTCGAATGTAACTTCACCTATTAGAATACTTACCCT
TAGTCCTGTAAATACACAAATTAGAGATCTTTAGCTGATTCCTTGTTATT
GTAAGGCGGCTACTGCTGTGTGATAACACGTGTTTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063431-exon-scaffold_389-1575043694:85505..85569 | TCONS_00063431-exon-scaffold_389-1575043694:85505..85569 | Clytia hemisphaerica | exon |
| TCONS_00063431-exon-scaffold_389-1575043694:82845..84696 | TCONS_00063431-exon-scaffold_389-1575043694:82845..84696 | Clytia hemisphaerica | exon |
| TCONS_00063431-exon-scaffold_389-1575043694:82182..82243 | TCONS_00063431-exon-scaffold_389-1575043694:82182..82243 | Clytia hemisphaerica | exon |
| TCONS_00063431-exon-scaffold_389-1510915933:85505..85569 | TCONS_00063431-exon-scaffold_389-1510915933:85505..85569 | Clytia hemisphaerica | exon |
| TCONS_00063431-exon-scaffold_389-1510915933:82845..84696 | TCONS_00063431-exon-scaffold_389-1510915933:82845..84696 | Clytia hemisphaerica | exon |
| TCONS_00063431-exon-scaffold_389-1510915933:82182..82243 | TCONS_00063431-exon-scaffold_389-1510915933:82182..82243 | Clytia hemisphaerica | exon |
| TCONS_00063431-exon-scaffold_389-1491911889:85505..85569 | TCONS_00063431-exon-scaffold_389-1491911889:85505..85569 | Clytia hemisphaerica | exon |
| TCONS_00063431-exon-scaffold_389-1491911889:82845..84696 | TCONS_00063431-exon-scaffold_389-1491911889:82845..84696 | Clytia hemisphaerica | exon |
| TCONS_00063431-exon-scaffold_389-1491911889:82182..82243 | TCONS_00063431-exon-scaffold_389-1491911889:82182..82243 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_389 | supercontig | scaffold_389:82182..85569 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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