TCONS_00063435 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063435
Unique NameTCONS_00063435
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063435 ID=TCONS_00063435|Name=TCONS_00063435|organism=Clytia hemisphaerica|type=transcript|length=518bp
CACTACGAaggttttaacatttttttgaagttttttttgtgaGAAGTTTT
GTATGTATATTGAAGAGATTCTTTTTGAGGGGAGAAGAGCAAAGACAAGA
CGCAATTATAAGataagtattttttttatatgttaACTTTACTGAAACTA
CCTACCTACCTACAATCTTACAGATATGATTTGAGCCTGTTTCACTTAAT
GATCACAAGAGCATAAGGGATATATTCTAGCAAGATTCGTAACGATATCG
ATATTCTTGAATAAGACACTTCGTATAGGCAAGCATAAATGCGTGGCAAC
AAttacaatttgtagtcatgtactacctaaattgtgcagactaccgggtt
ACCTTAACGGAGCGGCCcctttgtttctacaaaaccttagaaagataaca
gtaacattggcaagtcagAGCAGAAACagtttgtagtcatgtgctaccta
aattgtgcagactaccgggatACCTTAACGGCGCGGcctgtttgtttcta
caaaaccttagaaagatt
Run BLAST on NCBI

transcript from alignment at scaffold_389:16163..16680

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063435 ID=TCONS_00063435|Name=TCONS_00063435|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at scaffold_389:16163..16680 (Clytia hemisphaerica)
aatctttctaaggttttgtagaaacaaacaggCCGCGCCGTTAAGGTatc
ccggtagtctgcacaatttaggtagcacatgactacaaactGTTTCTGCT
ctgacttgccaatgttactgttatctttctaaggttttgtagaaacaaag
gGGCCGCTCCGTTAAGGTaacccggtagtctgcacaatttaggtagtaca
tgactacaaattgtaaTTGTTGCCACGCATTTATGCTTGCCTATACGAAG
TGTCTTATTCAAGAATATCGATATCGTTACGAATCTTGCTAGAATATATC
CCTTATGCTCTTGTGATCATTAAGTGAAACAGGCTCAAATCATATCTGTA
AGATTGTAGGTAGGTAGGTAGTTTCAGTAAAGTtaacatataaaaaaaat
acttatCTTATAATTGCGTCTTGTCTTTGCTCTTCTCCCCTCAAAAAGAA
TCTCTTCAATATACATACAAAACTTCtcacaaaaaaaacttcaaaaaaat
gttaaaacctTCGTAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039758XLOC_039758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063435-exon-scaffold_389-1491911889:16163..16680TCONS_00063435-exon-scaffold_389-1491911889:16163..16680Clytia hemisphaericaexon
TCONS_00063435-exon-scaffold_389-1510915933:16163..16680TCONS_00063435-exon-scaffold_389-1510915933:16163..16680Clytia hemisphaericaexon
TCONS_00063435-exon-scaffold_389-1575043694:16163..16680TCONS_00063435-exon-scaffold_389-1575043694:16163..16680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_389supercontigscaffold_389:16163..16680 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.215024	0.312172	0.748674	0	1.28579	0.632536	1.4982	2.3244	1.3474	2.45595	0.314392	0.694003	0.73291	1.65885	0.24646	0	2.93595	3.08304	0.163633	1.28996	1.15438	1.822	0	0.204548	0.222935	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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