TCONS_00063445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063445
Unique NameTCONS_00063445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063445 ID=TCONS_00063445|Name=TCONS_00063445|organism=Clytia hemisphaerica|type=transcript|length=456bp
AAAGAAAAGTGTCAAATACTGAGAGTTTTTCTGGGCAATCCCGatagaaa
aaatgttaaataatcTTGACTAACGCTTATCAAGAAATATATTACATAAA
TTAAACACCATCAAGTTTTCAAAGCCCAAATAAATTGAGAAGACAAAAAA
ACGAAACACTAAGCCGCGTTCGTTCTGATAGTTTTACAtaagtaaaaatg
aaaaattttgtattAATTATGATGTTGGCCCTTTCCACTTCTTTTGTGGC
TTGTAAAAAAAGGTCATGCGAAAAATTTATCGAAAACGAAGAAGGAGATT
TAATCTGTAGAGGAGGAAAAACGATTTACAGTTTCAATGACCAAGGGCGC
AATTTCTTCGCAGCAGAAGCAAATTGTGTCGCACAGGGTGGCCACTTGGT
AGGgatacaaaatgaaaaagaagctGACTTTCTTTTGGCAGaaatggaaa
aaagat
Run BLAST on NCBI

transcript from alignment at scaffold_39:198404..199142+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063445 ID=TCONS_00063445|Name=TCONS_00063445|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at scaffold_39:198404..199142+ (Clytia hemisphaerica)
AAAGAAAAGTGTCAAATACTGAGAGTTTTTCTGGGCAATCCCGatagaaa
aaatgttaaataatcTTGACTAACGCTTATCAAGAAATATATTACATAAA
TTAAACACCATCAAGTTTTCAAAGCCCAAATAAATTGAGAAGACAAAAAA
ACGAAACACTAAGCCGCGTTCGTTCTGATAGTTTTACAtaagtaaaaatg
aaaaattttgtattAATTATGATGTTGGCCCTTTCCACTTCTTTTGTGGC
TTGTAAAAAAAGGTCATGCGAAAAATTTATCGAAAACGAAGAAGGAGATT
TAATCTGTAGAGGTATATATATAAATAATACATTATACTCTGGTGGGTTC
ATGGTATAATTTTTTGTCACAATTTTCTCTTTACTGTAGCTTTTGATCcg
aagaaaatatgaaaaatgttaatacttttttattaaagatttttggtcaa
atagaaagaatcttcattttattcttcttcttcgttttttatTCTCATTT
GCGGAAATTTTGGAAACACTTTGAATCGCCAGAACGCCTCCTTAAAATTA
CCAatttaagattgttttttttcattaatttgcaTTCATTATTAGGAGGA
AAAACGATTTACAGTTTCAATGACCAAGGGCGCAATTTCTTCGCAGCAGA
AGCAAATTGTGTCGCACAGGGTGGCCACTTGGTAGGgatacaaaatgaaa
aagaagctGACTTTCTTTTGGCAGaaatggaaaaaagat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039765XLOC_039765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063445-exon-scaffold_39-1491911889:198404..198715TCONS_00063445-exon-scaffold_39-1491911889:198404..198715Clytia hemisphaericaexon
TCONS_00063445-exon-scaffold_39-1510915933:198404..198715TCONS_00063445-exon-scaffold_39-1510915933:198404..198715Clytia hemisphaericaexon
TCONS_00063445-exon-scaffold_39-1575043694:198404..198715TCONS_00063445-exon-scaffold_39-1575043694:198404..198715Clytia hemisphaericaexon
TCONS_00063445-exon-scaffold_39-1491911889:198999..199142TCONS_00063445-exon-scaffold_39-1491911889:198999..199142Clytia hemisphaericaexon
TCONS_00063445-exon-scaffold_39-1510915933:198999..199142TCONS_00063445-exon-scaffold_39-1510915933:198999..199142Clytia hemisphaericaexon
TCONS_00063445-exon-scaffold_39-1575043694:198999..199142TCONS_00063445-exon-scaffold_39-1575043694:198999..199142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:198404..199142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.159108	0	0	2.58531	3.80338	32.3172	19.0405	19.9364	32.4287	10.6035	13.2935	6.11703	5.07656	0.323478	1.2157	19.3912	14.8591	0	0.406427	0	0.149726	0.462642	0	0.196952	0	0	0.162427
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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