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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063456 ID=TCONS_00063456|Name=TCONS_00063456|organism=Clytia hemisphaerica|type=transcript|length=2218bp
CGGTCTCATATCAAGCCGACAAATTGTATCTGAATGGaatattaattttg
aaatttatcttcAGAATCAGAGTTTGAATAACCTATTCAATGTGGCTTTA
AAAGATTGTTGCGGAGTTCTTGGATCAAGGAAAGATGGTGCACGGATCGT
GTCGTTGTCGTGAACGATTGATGTGTGTGAATGCAGGTAGAGATGACgaa
gaatttttgaaagaaaagcagCAAGAAGTTGAAGAATACAACAAACGAAT
TGGAGATTACGTCGACGGTTTCACAGTCCATGGTCTCACGAAAGTCTTTA
AAGGGAAGAAGAAAGAAAGTACAGTGTGGATGGTTTTCATCTTCGTCGGT
TTGCTCCTGGCTGGCGTTGTGATTGGTCGATTGGTAGCTAAATATTATCG
ATTCGAAACATACACAGAAGTAAAATCAGTTGTGACGGCTAAAAATGTTA
TACCGAGTATTTCCGTCTGTGATTTTAGTGAGTTAAGAAAAGCGTATTTT
TCGTATTGTGGTACAACGCTTTTAAGTAAAGATGAAAATCGGACTAAAGA
GTATTGCGATCATTCTAAATTGAATCTGGAAGCGCTGGATAATTCTACAA
TGGTTAATGGCAAATGGAGAAATCGTCTGTTTGAGATTGAAGAATGTTAC
CCTTGGGAAGGTGCTAAATGTAATTCACCCAAATATTTCAAATCCCACAT
GCTTGGTGCGTGCTTCACTTGGAATTATGACGGTGAGTTTCACGATGCAT
ACGGACATGTGGATTTCCAATTCAAATACCTCCGGAACAGCAGTAAACAT
CGTCCGGACATCATTATTATACCACATGATCCACGCATCAGTGAAATCGA
TTTGACCAAAAAAATCACCATCGATATGAATAAACATTATGAAATCAAAA
TCGGCAAAACCTACATGATCCGAAAACCACACCCTTATTCGAAATGTACC
GCTGAAGCAACCAATGCTGAATTAGACGTCTTCCCTGGGAACTACGATCG
ACGCACGTGTCGTGAAACATACAAGCAGTTAAATTCCTTCAAAGAATGTG
GcgatatttttgaatatttcaaaagctACTTGCCTAAATCATTCATCAAG
AAATACGCACAGAATCGCACAATCGGGGAAATCGAAATGTGTATTTTGAA
GACCATTAATGTTAAACCGCCTGAAGATTTGTGCCCATTCCCCTGCGAGG
AGTTAAGTCTCAATATCCATACAAACGTGTACGATGGAGACAAGCATAAT
AAAGATCTCTACATCTTCGGTATCCAACTTGAGAATGTTGACACCTACAC
TGTAATGGAAGAACAATCGTTGTATTCTGCCGAACAGATGAGTTCTGAAA
TTGGTGGTTTCTTGGGATTGGTTATTGGCGCATCTTTGTTATCATTTGTT
GAGCTGTTCGCTTGCGGTGCATTGTACGTcttgaagaaaatcaaaagttg
aaaCATGATTGGTTTATCGTAAAATGAGAACTCTATTTGTCTTGTGAATG
GTGACAATTTTATTGAATTGATATTGTGAAATGTCAAATAAACGAATcta
aaaaaaacgaaagatTCACTTCGTAATTGCTAGCTCTGGCAGGAACAGTG
TAGATATTTGAAACtctaaagattttatttttatatttttcccttgaaaa
aggtaAGACCAAAATTCAAGAAGTTTACGTTTAAAAGACTCATCCCTTAG
TTGCTTAGCAACGAGTAAAGAAACACTTTTCTTCGACACCGTAACTGAGT
TCTCTACCATCACTCTATGGTCAccttctttttgaaaaaattacagttga
cattctctaattcgataaaAATGAATTggaatttcatcgaataatggaga
GTATCGAATAAGACCGTCAACTGTGATAAAACATTGGCCTTGACACCATT
GCAAGGTTTAAATAAGTATAGCAGAAGTGTTTTTTATCCATATTCCCTAT
GTGGAGTTTTATGNCCCTTGACACCTTTGCAAGGTTTAAATAAGTATAGC
AGAAGTGTTTTTTATCCATATTCCCTATGTGAAGTTTTATGATTCACAAA
CAGTTTTGAACCCACTGATTTCAAAACCCTCTCTAATGTTTGCCTTTGGG
AATTAACACGACGAGAAAAAGTATTGTAATGTATTAAAGTGAAAaattct
gttttatttaccgTTTTACTAAGTAATATTTTACATTGTTTTGTCCTAAG
TAAACAGatcttttaata Run BLAST on NCBI transcript from alignment at scaffold_39:293871..297292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063456 ID=TCONS_00063456|Name=TCONS_00063456|organism=Clytia hemisphaerica|type=transcript|length=3422bp|location=Sequence derived from alignment at scaffold_39:293871..297292+ (Clytia hemisphaerica)
CGGTCTCATATCAAGCCGACAAATTGTATCTGAATGGaatattaattttg
aaatttatcttcAGAATCAGAGTTTGAATAACCTATTCAATGTGGCTTTA
AAAGTATTTTGACTTTTCAATATTTAACGATAAACCTAGGCATCCAAGCA
AAATAATCAGATAGGAATAAAACACTAGCTATTTATTTGCAAATTGACAA
ATTTGCGGTTAGGCAACCGATAGGAATTCTAACGCTAATTTGGTAATCGG
GCATTTTGGCAAATACAATGgatgaaataatattttaagtTCAGACTCAG
AATAGGGTAAAATAGTGTCAAACCCATTTCAAAAAGGTATGCTCAAAGCT
GCTGATGCTGTACTCATAAACACTcgactaaaaaaacttttacagGCTTA
TAATTGCCATAATATTTGGAGAGGCAAATCCCCTTAAGAAGAGCTTCTTT
ATCCTACTCAAACTTCTTATGGGGAAGAAAgaggcaaaaaaagataaacg
gATTTAGCTGCTGAAACCCTTTAACATGTCCAATTGGattgactttattt
ttttcttatattcaGGATTGTTGCGGAGTTCTTGGATCAAGGAAAGATGG
TGCACGGATCGTGTCGTTGTCGTGAACGATTGATGTGTGTGAATGCAGGT
AGAGGTGAGTGAAGGTTATTCTTTCGTGCAACTACATTGGTGGTCGTGCA
GCATTCGCTTTTAGACTGTTTGGCAGCAGTAGACATTCATAGACAAAAAA
GTTATAattaccaccctgaaaattgtccaagaTGGCCAAAGAGTTCGATC
CTGTCAGATGCACATCTTGATATCATCATAGCCTAAAAAAAGGAACTTCA
CAAGAAGCGTCCCCGTTCCTACTTTTGACTAAGTGACTCCCCCCCCCGGA
CTTTATAAACAAGTAGAGAGTCTGATGAAGAGAAGTATTCCTTAAGAGAG
GAATGCTGGACAGTCGTCCTGGATTTGATGTGCTTCGACCCTTGATTAAT
TAGAAACTGTACATTCTCTCTTTGAGGGTATCTATGATTTTCCTTTCCTA
CCTAGATTAGCTTTGAAATGTTGTGTTTTAACATGGCACAAATTATGTTG
ACTTCTTAGTGATTAGTGGAGGGGGTTTACCGGTATTTGTTTTTTCTACT
AGTACTCCCGTATTGATGGAAGGTTTGCCGGTCATCGTCAGCCCTTCATT
TCATtaaatgaaaaacttcaataGTTTATATACCAGCGatcaaagcaagg
tttttcgttcgagacggaaaatggattttacataCAGCTGGGtagcacat
attcttgaaaCCTTGGTAAATTCAGCCTCTTACTTCACTTAGACGTAAAT
CCATTAGAGATGATTGAGTATACAAAAATGTTGCTTTATTTTTCAGATGA
CgaagaatttttgaaagaaaagcagCAAGAAGTTGAAGAATACAACAAAC
GAATTGGAGATTACGTCGACGGTTTCACAGTCCATGGTCTCACGAAAGTC
TTTAAAGGGAAGAAGAAAGAAAGTACAGTGTGGATGGTTTTCATCTTCGT
CGGTTTGCTCCTGGCTGGCGTTGTGATTGGTCGATTGGTAGCTAAATATT
ATCGATTCGAAACATACACAGAAGTAAAATCAGTTGTGACGGCTAAAAAT
GTTATACCGAGTATTTCCGTCTGTGATTTTAGTGAGTTAAGAAAAGCGTA
TTTTTCGTATTGTGGTACAACGCTTTTAAGTAAAGATGAAAATCGGACTA
AAGAGTATTGCGATCATTCTAAATTGAATCTGGAAGCGCTGGATAATTCT
ACAATGGTTAATGGCAAATGGAGAAATCGTCTGTTTGAGATTGAAGAATG
TTACCCTTGGGAAGGTGCTAAATGTAATTCACCCAAATATTTCAAATCCC
ACATGCTTGGTGCGTGCTTCACTTGGAATTATGACGGTGAGTTTCACGAT
GCATACGGACATGTGGATTTCCAATTCAAATACCTCCGGAACAGCAGTAA
ACATCGTCCGGACATCATTATTATACCACATGATCCACGCATCAGTGAAA
TCGATTTGACCAAAAAAATCACCATCGATATGAATAAACATTATGAAATC
AAAATCGGCAAAACCTACATGATCCGAAAACCACACCCTTATTCGAAATG
TACCGCTGAAGCAACCAATGCTGAATTAGACGTCTTCCCTGGGAACTACG
ATCGACGCACGTGTCGTGAAACATACAAGCAGTTAAATTCCTTCAAAGAA
TGTGGcgatatttttgaatatttcaaaagctACTTGCCTAAATCATTCAT
CAAGAAATACGCACAGAATCGCACAATCGGGGAAATCGAAATGTGTATTT
TGAAGACCATTAATGTTAAACCGCCTGAAGATTTGTGCCCATTCCCCTGC
GAGGAGTTAAGTCTCAATATCCATACAAACGTGTACGATGGAGACAAGCA
TAATAAAGATCTCTACATCTTCGGTATCCAACTTGAGAATGTTGACACCT
ACACTGTAATGGAAGAACAATCGTTGTATTCTGCCGAACAGATGAGTTCT
GAAATTGGTGGTTTCTTGGGATTGGTTATTGGCGCATCTTTGTTATCATT
TGTTGAGCTGTTCGCTTGCGGTGCATTGTACGTcttgaagaaaatcaaaa
gttgaaaCATGATTGGTTTATCGTAAAATGAGAACTCTATTTGTCTTGTG
AATGGTGACAATTTTATTGAATTGATATTGTGAAATGTCAAATAAACGAA
TctaaaaaaaacgaaagatTCACTTCGTAATTGCTAGCTCTGGCAGGAAC
AGTGTAGATATTTGAAACtctaaagattttatttttatatttttcccttg
aaaaaggtaAGACCAAAATTCAAGAAGTTTACGTTTAAAAGACTCATCCC
TTAGTTGCTTAGCAACGAGTAAAGAAACACTTTTCTTCGACACCGTAACT
GAGTTCTCTACCATCACTCTATGGTCAccttctttttgaaaaaattacag
ttgacattctctaattcgataaaAATGAATTggaatttcatcgaataatg
gagaGTATCGAATAAGACCGTCAACTGTGATAAAACATTGGCCTTGACAC
CATTGCAAGGTTTAAATAAGTATAGCAGAAGTGTTTTTTATCCATATTCC
CTATGTGGAGTTTTATGNCCCTTGACACCTTTGCAAGGTTTAAATAAGTA
TAGCAGAAGTGTTTTTTATCCATATTCCCTATGTGAAGTTTTATGATTCA
CAAACAGTTTTGAACCCACTGATTTCAAAACCCTCTCTAATGTTTGCCTT
TGGGAATTAACACGACGAGAAAAAGTATTGTAATGTATTAAAGTGAAAaa
ttctgttttatttaccgTTTTACTAAGTAATATTTTACATTGTTTTGTCC
TAAGTAAACAGatcttttaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063456-exon-scaffold_39-1491911889:293871..293973 | TCONS_00063456-exon-scaffold_39-1491911889:293871..293973 | Clytia hemisphaerica | exon |
| TCONS_00063456-exon-scaffold_39-1510915933:293871..293973 | TCONS_00063456-exon-scaffold_39-1510915933:293871..293973 | Clytia hemisphaerica | exon |
| TCONS_00063456-exon-scaffold_39-1575043694:293871..293973 | TCONS_00063456-exon-scaffold_39-1575043694:293871..293973 | Clytia hemisphaerica | exon |
| TCONS_00063456-exon-scaffold_39-1491911889:294436..294524 | TCONS_00063456-exon-scaffold_39-1491911889:294436..294524 | Clytia hemisphaerica | exon |
| TCONS_00063456-exon-scaffold_39-1510915933:294436..294524 | TCONS_00063456-exon-scaffold_39-1510915933:294436..294524 | Clytia hemisphaerica | exon |
| TCONS_00063456-exon-scaffold_39-1575043694:294436..294524 | TCONS_00063456-exon-scaffold_39-1575043694:294436..294524 | Clytia hemisphaerica | exon |
| TCONS_00063456-exon-scaffold_39-1491911889:295267..297292 | TCONS_00063456-exon-scaffold_39-1491911889:295267..297292 | Clytia hemisphaerica | exon |
| TCONS_00063456-exon-scaffold_39-1510915933:295267..297292 | TCONS_00063456-exon-scaffold_39-1510915933:295267..297292 | Clytia hemisphaerica | exon |
| TCONS_00063456-exon-scaffold_39-1575043694:295267..297292 | TCONS_00063456-exon-scaffold_39-1575043694:295267..297292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:293871..297292 + |
Blast
The following BLAST results are available for this feature:
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