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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063457 ID=TCONS_00063457|Name=TCONS_00063457|organism=Clytia hemisphaerica|type=transcript|length=2273bp
CTATTTATTTGCAAATTGACAAATTTGCGGTTAGGCAACCGATAGGAATT
CTAACGCTAATTTGGTAATCGGGCATTTTGGCAAATACAATGgatgaaat
aatattttaagtTCAGACTCAGAATAGGGTAAAATAGTGTCAAACCCATT
TCAAAAAGGATTGTTGCGGAGTTCTTGGATCAAGGAAAGATGGTGCACGG
ATCGTGTCGTTGTCGTGAACGATTGATGTGTGTGAATGCAGGTAGAGATG
ACgaagaatttttgaaagaaaagcagCAAGAAGTTGAAGAATACAACAAA
CGAATTGGAGATTACGTCGACGGTTTCACAGTCCATGGTCTCACGAAAGT
CTTTAAAGGGAAGAAGAAAGAAAGTACAGTGTGGATGGTTTTCATCTTCG
TCGGTTTGCTCCTGGCTGGCGTTGTGATTGGTCGATTGGTAGCTAAATAT
TATCGATTCGAAACATACACAGAAGTAAAATCAGTTGTGACGGCTAAAAA
TGTTATACCGAGTATTTCCGTCTGTGATTTTAGTGAGTTAAGAAAAGCGT
ATTTTTCGTATTGTGGTACAACGCTTTTAAGTAAAGATGAAAATCGGACT
AAAGAGTATTGCGATCATTCTAAATTGAATCTGGAAGCGCTGGATAATTC
TACAATGGTTAATGGCAAATGGAGAAATCGTCTGTTTGAGATTGAAGAAT
GTTACCCTTGGGAAGGTGCTAAATGTAATTCACCCAAATATTTCAAATCC
CACATGCTTGGTGCGTGCTTCACTTGGAATTATGACGGTGAGTTTCACGA
TGCATACGGACATGTGGATTTCCAATTCAAATACCTCCGGAACAGCAGTA
AACATCGTCCGGACATCATTATTATACCACATGATCCACGCATCAGTGAA
ATCGATTTGACCAAAAAAATCACCATCGATATGAATAAACATTATGAAAT
CAAAATCGGCAAAACCTACATGATCCGAAAACCACACCCTTATTCGAAAT
GTACCGCTGAAGCAACCAATGCTGAATTAGACGTCTTCCCTGGGAACTAC
GATCGACGCACGTGTCGTGAAACATACAAGCAGTTAAATTCCTTCAAAGA
ATGTGGcgatatttttgaatatttcaaaagctACTTGCCTAAATCATTCA
TCAAGAAATACGCACAGAATCGCACAATCGGGGAAATCGAAATGTGTATT
TTGAAGACCATTAATGTTAAACCGCCTGAAGATTTGTGCCCATTCCCCTG
CGAGGAGTTAAGTCTCAATATCCATACAAACGTGTACGATGGAGACAAGC
ATAATAAAGATCTCTACATCTTCGGTATCCAACTTGAGAATGTTGACACC
TACACTGTAATGGAAGAACAATCGTTGTATTCTGCCGAACAGATGAGTTC
TGAAATTGGTGGTTTCTTGGGATTGGTTATTGGCGCATCTTTGTTATCAT
TTGTTGAGCTGTTCGCTTGCGGTGCATTGTACGTcttgaagaaaatcaaa
agttgaaaCATGATTGGTTTATCGTAAAATGAGAACTCTATTTGTCTTGT
GAATGGTGACAATTTTATTGAATTGATATTGTGAAATGTCAAATAAACGA
ATctaaaaaaaacgaaagatTCACTTCGTAATTGCTAGCTCTGGCAGGAA
CAGTGTAGATATTTGAAACtctaaagattttatttttatatttttccctt
gaaaaaggtaAGACCAAAATTCAAGAAGTTTACGTTTAAAAGACTCATCC
CTTAGTTGCTTAGCAACGAGTAAAGAAACACTTTTCTTCGACACCGTAAC
TGAGTTCTCTACCATCACTCTATGGTCAccttctttttgaaaaaattaca
gttgacattctctaattcgataaaAATGAATTggaatttcatcgaataat
ggagaGTATCGAATAAGACCGTCAACTGTGATAAAACATTGGCCTTGACA
CCATTGCAAGGTTTAAATAAGTATAGCAGAAGTGTTTTTTATCCATATTC
CCTATGTGGAGTTTTATGNCCCTTGACACCTTTGCAAGGTTTAAATAAGT
ATAGCAGAAGTGTTTTTTATCCATATTCCCTATGTGAAGTTTTATGATTC
ACAAACAGTTTTGAACCCACTGATTTCAAAACCCTCTCTAATGTTTGCCT
TTGGGAATTAACACGACGAGAAAAAGTATTGTAATGTATTAAAGTGAAAa
attctgttttatttaccgTTTTACTAAGTAATATTTTACATTGTTTTGTC
CTAAGTAAACAGatcttttaata Run BLAST on NCBI transcript from alignment at scaffold_39:294049..297292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063457 ID=TCONS_00063457|Name=TCONS_00063457|organism=Clytia hemisphaerica|type=transcript|length=3244bp|location=Sequence derived from alignment at scaffold_39:294049..297292+ (Clytia hemisphaerica)
CTATTTATTTGCAAATTGACAAATTTGCGGTTAGGCAACCGATAGGAATT
CTAACGCTAATTTGGTAATCGGGCATTTTGGCAAATACAATGgatgaaat
aatattttaagtTCAGACTCAGAATAGGGTAAAATAGTGTCAAACCCATT
TCAAAAAGGTATGCTCAAAGCTGCTGATGCTGTACTCATAAACACTcgac
taaaaaaacttttacagGCTTATAATTGCCATAATATTTGGAGAGGCAAA
TCCCCTTAAGAAGAGCTTCTTTATCCTACTCAAACTTCTTATGGGGAAGA
AAgaggcaaaaaaagataaacggATTTAGCTGCTGAAACCCTTTAACATG
TCCAATTGGattgactttatttttttcttatattcaGGATTGTTGCGGAG
TTCTTGGATCAAGGAAAGATGGTGCACGGATCGTGTCGTTGTCGTGAACG
ATTGATGTGTGTGAATGCAGGTAGAGGTGAGTGAAGGTTATTCTTTCGTG
CAACTACATTGGTGGTCGTGCAGCATTCGCTTTTAGACTGTTTGGCAGCA
GTAGACATTCATAGACAAAAAAGTTATAattaccaccctgaaaattgtcc
aagaTGGCCAAAGAGTTCGATCCTGTCAGATGCACATCTTGATATCATCA
TAGCCTAAAAAAAGGAACTTCACAAGAAGCGTCCCCGTTCCTACTTTTGA
CTAAGTGACTCCCCCCCCCGGACTTTATAAACAAGTAGAGAGTCTGATGA
AGAGAAGTATTCCTTAAGAGAGGAATGCTGGACAGTCGTCCTGGATTTGA
TGTGCTTCGACCCTTGATTAATTAGAAACTGTACATTCTCTCTTTGAGGG
TATCTATGATTTTCCTTTCCTACCTAGATTAGCTTTGAAATGTTGTGTTT
TAACATGGCACAAATTATGTTGACTTCTTAGTGATTAGTGGAGGGGGTTT
ACCGGTATTTGTTTTTTCTACTAGTACTCCCGTATTGATGGAAGGTTTGC
CGGTCATCGTCAGCCCTTCATTTCATtaaatgaaaaacttcaataGTTTA
TATACCAGCGatcaaagcaaggtttttcgttcgagacggaaaatggattt
tacataCAGCTGGGtagcacatattcttgaaaCCTTGGTAAATTCAGCCT
CTTACTTCACTTAGACGTAAATCCATTAGAGATGATTGAGTATACAAAAA
TGTTGCTTTATTTTTCAGATGACgaagaatttttgaaagaaaagcagCAA
GAAGTTGAAGAATACAACAAACGAATTGGAGATTACGTCGACGGTTTCAC
AGTCCATGGTCTCACGAAAGTCTTTAAAGGGAAGAAGAAAGAAAGTACAG
TGTGGATGGTTTTCATCTTCGTCGGTTTGCTCCTGGCTGGCGTTGTGATT
GGTCGATTGGTAGCTAAATATTATCGATTCGAAACATACACAGAAGTAAA
ATCAGTTGTGACGGCTAAAAATGTTATACCGAGTATTTCCGTCTGTGATT
TTAGTGAGTTAAGAAAAGCGTATTTTTCGTATTGTGGTACAACGCTTTTA
AGTAAAGATGAAAATCGGACTAAAGAGTATTGCGATCATTCTAAATTGAA
TCTGGAAGCGCTGGATAATTCTACAATGGTTAATGGCAAATGGAGAAATC
GTCTGTTTGAGATTGAAGAATGTTACCCTTGGGAAGGTGCTAAATGTAAT
TCACCCAAATATTTCAAATCCCACATGCTTGGTGCGTGCTTCACTTGGAA
TTATGACGGTGAGTTTCACGATGCATACGGACATGTGGATTTCCAATTCA
AATACCTCCGGAACAGCAGTAAACATCGTCCGGACATCATTATTATACCA
CATGATCCACGCATCAGTGAAATCGATTTGACCAAAAAAATCACCATCGA
TATGAATAAACATTATGAAATCAAAATCGGCAAAACCTACATGATCCGAA
AACCACACCCTTATTCGAAATGTACCGCTGAAGCAACCAATGCTGAATTA
GACGTCTTCCCTGGGAACTACGATCGACGCACGTGTCGTGAAACATACAA
GCAGTTAAATTCCTTCAAAGAATGTGGcgatatttttgaatatttcaaaa
gctACTTGCCTAAATCATTCATCAAGAAATACGCACAGAATCGCACAATC
GGGGAAATCGAAATGTGTATTTTGAAGACCATTAATGTTAAACCGCCTGA
AGATTTGTGCCCATTCCCCTGCGAGGAGTTAAGTCTCAATATCCATACAA
ACGTGTACGATGGAGACAAGCATAATAAAGATCTCTACATCTTCGGTATC
CAACTTGAGAATGTTGACACCTACACTGTAATGGAAGAACAATCGTTGTA
TTCTGCCGAACAGATGAGTTCTGAAATTGGTGGTTTCTTGGGATTGGTTA
TTGGCGCATCTTTGTTATCATTTGTTGAGCTGTTCGCTTGCGGTGCATTG
TACGTcttgaagaaaatcaaaagttgaaaCATGATTGGTTTATCGTAAAA
TGAGAACTCTATTTGTCTTGTGAATGGTGACAATTTTATTGAATTGATAT
TGTGAAATGTCAAATAAACGAATctaaaaaaaacgaaagatTCACTTCGT
AATTGCTAGCTCTGGCAGGAACAGTGTAGATATTTGAAACtctaaagatt
ttatttttatatttttcccttgaaaaaggtaAGACCAAAATTCAAGAAGT
TTACGTTTAAAAGACTCATCCCTTAGTTGCTTAGCAACGAGTAAAGAAAC
ACTTTTCTTCGACACCGTAACTGAGTTCTCTACCATCACTCTATGGTCAc
cttctttttgaaaaaattacagttgacattctctaattcgataaaAATGA
ATTggaatttcatcgaataatggagaGTATCGAATAAGACCGTCAACTGT
GATAAAACATTGGCCTTGACACCATTGCAAGGTTTAAATAAGTATAGCAG
AAGTGTTTTTTATCCATATTCCCTATGTGGAGTTTTATGNCCCTTGACAC
CTTTGCAAGGTTTAAATAAGTATAGCAGAAGTGTTTTTTATCCATATTCC
CTATGTGAAGTTTTATGATTCACAAACAGTTTTGAACCCACTGATTTCAA
AACCCTCTCTAATGTTTGCCTTTGGGAATTAACACGACGAGAAAAAGTAT
TGTAATGTATTAAAGTGAAAaattctgttttatttaccgTTTTACTAAGT
AATATTTTACATTGTTTTGTCCTAAGTAAACAGatcttttaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063457-exon-scaffold_39-1491911889:294049..294206 | TCONS_00063457-exon-scaffold_39-1491911889:294049..294206 | Clytia hemisphaerica | exon |
| TCONS_00063457-exon-scaffold_39-1510915933:294049..294206 | TCONS_00063457-exon-scaffold_39-1510915933:294049..294206 | Clytia hemisphaerica | exon |
| TCONS_00063457-exon-scaffold_39-1575043694:294049..294206 | TCONS_00063457-exon-scaffold_39-1575043694:294049..294206 | Clytia hemisphaerica | exon |
| TCONS_00063457-exon-scaffold_39-1491911889:294436..294524 | TCONS_00063457-exon-scaffold_39-1491911889:294436..294524 | Clytia hemisphaerica | exon |
| TCONS_00063457-exon-scaffold_39-1510915933:294436..294524 | TCONS_00063457-exon-scaffold_39-1510915933:294436..294524 | Clytia hemisphaerica | exon |
| TCONS_00063457-exon-scaffold_39-1575043694:294436..294524 | TCONS_00063457-exon-scaffold_39-1575043694:294436..294524 | Clytia hemisphaerica | exon |
| TCONS_00063457-exon-scaffold_39-1491911889:295267..297292 | TCONS_00063457-exon-scaffold_39-1491911889:295267..297292 | Clytia hemisphaerica | exon |
| TCONS_00063457-exon-scaffold_39-1510915933:295267..297292 | TCONS_00063457-exon-scaffold_39-1510915933:295267..297292 | Clytia hemisphaerica | exon |
| TCONS_00063457-exon-scaffold_39-1575043694:295267..297292 | TCONS_00063457-exon-scaffold_39-1575043694:295267..297292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:294049..297292 + |
Blast
The following BLAST results are available for this feature:
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