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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063459 ID=TCONS_00063459|Name=TCONS_00063459|organism=Clytia hemisphaerica|type=transcript|length=1659bp
GTTTCAAATTCGACAAGAAATAGAAAGTCGTTTCAAATACAATGTGACGT
TGTTCCCATCAATAATGCAGGAGGATGATGGTcttgaaaagaaagaacaa
cAGGTCATCACTCAAAACAACACTAAGGTGGAGTACAGCAATGACTTTAC
AGTCACCAGTGAACAAATGGAAGAAAGATATCCTTCATTATTCCCAAAGA
aaGAGTACAGTCCAGTTCAACGCCGAAAATTCTCAGCTGTTTTACCTAAA
GACAAGAAAAAACGTGATAAAATCTTGAAGGAAAAGATCGATGGTTACAT
AGACGCGTTCACAGTACATGGCTTGACACGTGTTTTTAAAGCACCAAAAC
GTGAAGCCATATTATGGATGGTTGTGCTCTGTTTGGGAATTTTCCTGACC
ACCATCGTATTGTATAAACTGTTAGCGAAATATTTCAAGTATGAGACTTA
TACTGAGATTAAGTCCGTTGTGACGGATAAGAACTATTTCCCGAGTCTTT
CCATATGCGAATTAAAGATGTTACAGAGAAATTATTTCTCGTATTGCGGT
CAATCAATGAGTCCTTTACGTGATGGGAAAAGTTCGAAACAGCCTTGCGA
TCATGCAAAGATCCCGACGTCGGCACATAATGCATCTATGATCGGGAATG
GAACAAAATCGTGGTCAAACGGCTTGTTTGATGTATTGTATTGCTACACA
TGGGATTCTAAAGATTGTAACAGTTTATATCATTTCCGATCAAACCGGAA
TTTAAATCATTCGTGTATCACATGGAATTATCAAGGAGATATGACTGATT
TATACGGTCATGTCGAAATCGGTATCAAATTCCACGCATGGGATGATAGA
GAACcgaaaatttttgcttcaccGCATGATCCAAATCTCATTGAAATCGA
TTTAACCAAAAAGGTTAATTTGGATGCACACAAGCTTTATGAGATCAAAC
TTGTGAAAACGGAGGTTAAAAGGTTGCCAAATCCATACCCGTCCAACTGT
TCCAGCCAACGAGTGATGGATATTCTTCCCGGAGACTACAGTCGTCGAAC
CTGCATCGAATCATACAAGATGTTGAACGCTTACAAAGAGTGTGGTGACA
CTTTTGATTACGTGCGACCACATATTCCGGAAAAAATAAAAGCTCAATAC
TCGAAGAATAGCAGCGTTAAAGAGACACGTGCTTGTATCCGAAGGGCCGT
TCAAAAGGAGCCGGAAAAGGGCAGGTGCCCCTTTCCATGCCGAGAACTAG
ATCTTGGAATCAGTTCGTCTTATAATGAACGTCATGGTCTAGCAAGCCAG
TCAGGCCATGATGGCCCTCATGAATGGACCTATAACGTGGCGCTGCAGTT
TCAACACGTAGATTACTATAAGATAATGGAGGAGAAAGCATTGTACTCAG
GGAATCAATTGACATGTGAAGTAGGAGGATTCCTCGGTTTAGTTATGGGG
GCTTCCATGCTTTCTTTTGTTGAGATTCTGGTATGTGGCGCATTGTATAT
GATgcgaaaaatgtataacaatgAACAAGAAGATGTTTAATAGCGATTTT
TGTGATAGTTTTAGAGAGGATTACTCGAGTAAACTTCAAGCAGACGTGTT
TCAAGATAAATTATGAAGACAAGCGATGATTCCTTTCGTAGATTATAATT
CGTTCGAAG Run BLAST on NCBI protein sequence of TCONS_00063459-protein >TCONS_00063459-protein ID=TCONS_00063459-protein|Name=TCONS_00063459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
FQIRQEIESRFKYNVTLFPSIMQEDDGLEKKEQQVITQNNTKVEYSNDFT
VTSEQMEERYPSLFPKKEYSPVQRRKFSAVLPKDKKKRDKILKEKIDGYI
DAFTVHGLTRVFKAPKREAILWMVVLCLGIFLTTIVLYKLLAKYFKYETY
TEIKSVVTDKNYFPSLSICELKMLQRNYFSYCGQSMSPLRDGKSSKQPCD
HAKIPTSAHNASMIGNGTKSWSNGLFDVLYCYTWDSKDCNSLYHFRSNRN
LNHSCITWNYQGDMTDLYGHVEIGIKFHAWDDREPKIFASPHDPNLIEID
LTKKVNLDAHKLYEIKLVKTEVKRLPNPYPSNCSSQRVMDILPGDYSRRT
CIESYKMLNAYKECGDTFDYVRPHIPEKIKAQYSKNSSVKETRACIRRAV
QKEPEKGRCPFPCRELDLGISSSYNERHGLASQSGHDGPHEWTYNVALQF
QHVDYYKIMEEKALYSGNQLTCEVGGFLGLVMGASMLSFVEILVCGALYM
MRKMYNNEQEDV Run BLAST on NCBI transcript from alignment at scaffold_39:315243..317819+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063459 ID=TCONS_00063459|Name=TCONS_00063459|organism=Clytia hemisphaerica|type=transcript|length=2577bp|location=Sequence derived from alignment at scaffold_39:315243..317819+ (Clytia hemisphaerica)
GTTTCAAATTCGACAAGAAATAGAAAGTCGTTTCAAATACAATGTGACGT
TGTTCCCATCAATAATGCAGGAGGATGATGGTcttgaaaagaaagaacaa
cAGGTCATCACTCAAAACAACACTAAGGTGGAGTACAGCAATGACTTTAC
AGTCACCAGTGAACAAATGGAAGAAAGATATCCTTCATTATTCCCAAAGA
GTAAGTTGAATTATTGTTGCGCCGTGATAACATGGCTTTTTTCAAGAATT
CACAGTGAACAGTTGCAATCTTTCAATAGCGAGTTTTAATGTATCTGTGT
CTTTCTCTGTGACGGAGAtggttagcttctgatttgtctagatcctgact
gactaAGGACGACATTTAACAAGCACTTTTagcgtcctcgattttgcgtg
tcagaactgcgggttattccaattCTCTTCAGTAGCTCagtcgtcctcaa
aagtgcaaacaCATAAGCTAACTAATAATTCGAGATGGACAGATGAAATG
TTTTCAACAACAATAGATACTTGACTTCAATCCTTCCAAATGGTCATGGT
CATTCTTTCTGTATTTTAAATGTATTTTAGTTTACTGCGTTTCAATCTCA
AATACAAGAATACATTCGCGAATCAAATAATTAATGctagtttttttctg
aagtaTGCTATCTATCCATCgattcgattttgatttttctgccTTAACTT
CGAAGAAAAAGCATCTGCTATTGCATTAAGTGTTAGGTTAAGTTCTTAAC
TATAAAAAGGAGATGAAACAATACAGTCGAGTATCTATATCTCTATAACT
CCGCATAATGATATTCCCACTGGGAGaaaattactttattttttgttaGC
CCAAATCTCCGTAACTTGAAACatcccagttggcacacaacgttgtttca
acgttcatctatcGTTATATGGACGGTGTGAacattaaatgaacgttgaa
agaacgttgtgtgcaagCTTGAACGCTAAACGTTGTCTTGAAGTTCAAGA
GTTTATACTTGAGTGTAAAATAATGAGCTATGATGGAGCTGGTTCCAATG
ATTCCAAAAAAATACAACCCGAACAAGTATACTGTAATAAAGAATTTATC
TgtctttaattttttcagaaGAGTACAGTCCAGTTCAACGCCGAAAATTC
TCAGCTGTTTTACCTAAAGACAAGAAAAAACGTGATAAAATCTTGAAGGA
AAAGATCGATGGTTACATAGACGCGTTCACAGTACATGGCTTGACACGTG
TTTTTAAAGCACCAAAACGTGAAGCCATATTATGGATGGTTGTGCTCTGT
TTGGGAATTTTCCTGACCACCATCGTATTGTATAAACTGTTAGCGAAATA
TTTCAAGTATGAGACTTATACTGAGATTAAGTCCGTTGTGACGGATAAGA
ACTATTTCCCGAGTCTTTCCATATGCGAATTAAAGATGTTACAGAGAAAT
TATTTCTCGTATTGCGGTCAATCAATGAGTCCTTTACGTGATGGGAAAAG
TTCGAAACAGCCTTGCGATCATGCAAAGATCCCGACGTCGGCACATAATG
CATCTATGATCGGGAATGGAACAAAATCGTGGTCAAACGGCTTGTTTGAT
GTATTGTATTGCTACACATGGGATTCTAAAGATTGTAACAGTTTATATCA
TTTCCGATCAAACCGGAATTTAAATCATTCGTGTATCACATGGAATTATC
AAGGAGATATGACTGATTTATACGGTCATGTCGAAATCGGTATCAAATTC
CACGCATGGGATGATAGAGAACcgaaaatttttgcttcaccGCATGATCC
AAATCTCATTGAAATCGATTTAACCAAAAAGGTTAATTTGGATGCACACA
AGCTTTATGAGATCAAACTTGTGAAAACGGAGGTTAAAAGGTTGCCAAAT
CCATACCCGTCCAACTGTTCCAGCCAACGAGTGATGGATATTCTTCCCGG
AGACTACAGTCGTCGAACCTGCATCGAATCATACAAGATGTTGAACGCTT
ACAAAGAGTGTGGTGACACTTTTGATTACGTGCGACCACATATTCCGGAA
AAAATAAAAGCTCAATACTCGAAGAATAGCAGCGTTAAAGAGACACGTGC
TTGTATCCGAAGGGCCGTTCAAAAGGAGCCGGAAAAGGGCAGGTGCCCCT
TTCCATGCCGAGAACTAGATCTTGGAATCAGTTCGTCTTATAATGAACGT
CATGGTCTAGCAAGCCAGTCAGGCCATGATGGCCCTCATGAATGGACCTA
TAACGTGGCGCTGCAGTTTCAACACGTAGATTACTATAAGATAATGGAGG
AGAAAGCATTGTACTCAGGGAATCAATTGACATGTGAAGTAGGAGGATTC
CTCGGTTTAGTTATGGGGGCTTCCATGCTTTCTTTTGTTGAGATTCTGGT
ATGTGGCGCATTGTATATGATgcgaaaaatgtataacaatgAACAAGAAG
ATGTTTAATAGCGATTTTTGTGATAGTTTTAGAGAGGATTACTCGAGTAA
ACTTCAAGCAGACGTGTTTCAAGATAAATTATGAAGACAAGCGATGATTC
CTTTCGTAGATTATAATTCGTTCGAAG Coding sequence (CDS) from alignment at scaffold_39:315243..317819+ >TCONS_00063459 ID=TCONS_00063459|Name=TCONS_00063459|organism=Clytia hemisphaerica|type=CDS|length=3078bp|location=Sequence derived from alignment at scaffold_39:315243..317819+ (Clytia hemisphaerica)
TTTCAAATTCGACAAGAAATAGAAAGTCGTTTCAAATACAATGTGACGTT
GTTCCCATCAATAATGCAGGAGGATGATGGTcttgaaaagaaagaacaac
AGGTCATCACTCAAAACAACACTAAGGTGGAGTACAGCAATGACTTTACA
GTCACCAGTGAACAAATGGAAGAAAGATATCCTTCATTATTCCCAAAGAa
aGAGTACAGTCCAGTTCAACGCCGAAAATTCTCAGCTGTTTTACCTAAAG
ACAAGAAAAAACGTGATAAAATCTTGAAGGAAAAGATCGATGGTTACATA
GACGCGTTCACAGTACATGGCTTGACACGTGTTTTTAAAGCACCAAAACG
TGAAGCCATATTATGGATGGTTGTGCTCTGTTTGGGAATTTTCCTGACCA
CCATCGTATTGTATAAACTGTTAGCGAAATATTTCAAGTATGAGACTTAT
ACTGAGATTAAGTCCGTTGTGACGGATAAGAACTATTTCCCGAGTCTTTC
CATATGCGAATTAAAGATGTTACAGAGAAATTATTTCTCGTATTGCGGTC
AATCAATGAGTCCTTTACGTGATGGGAAAAGTTCGAAACAGCCTTGCGAT
CATGCAAAGATCCCGACGTCGGCACATAATGCATCTATGATCGGGAATGG
AACAAAATCGTGGTCAAACGGCTTGTTTGATGTATTGTATTGCTACACAT
GGGATTCTAAAGATTGTAACAGTTTATATCATTTCCGATCAAACCGGAAT
TTAAATCATTCGTGTATCACATGGAATTATCAAGGAGATATGACTGATTT
ATACGGTCATGTCGAAATCGGTATCAAATTCCACGCATGGGATGATAGAG
AACcgaaaatttttgcttcaccGCATGATCCAAATCTCATTGAAATCGAT
TTAACCAAAAAGGTTAATTTGGATGCACACAAGCTTTATGAGATCAAACT
TGTGAAAACGGAGGTTAAAAGGTTGCCAAATCCATACCCGTCCAACTGTT
CCAGCCAACGAGTGATGGATATTCTTCCCGGAGACTACAGTCGTCGAACC
TGCATCGAATCATACAAGATGTTGAACGCTTACAAAGAGTGTGGTGACAC
TTTTGATTACGTGCGACCACATATTCCGGAAAAAATAAAAGCTCAATACT
CGAAGAATAGCAGCGTTAAAGAGACACGTGCTTGTATCCGAAGGGCCGTT
CAAAAGGAGCCGGAAAAGGGCAGGTGCCCCTTTCCATGCCGAGAACTAGA
TCTTGGAATCAGTTCGTCTTATAATGAACGTCATGGTCTAGCAAGCCAGT
CAGGCCATGATGGCCCTCATGAATGGACCTATAACGTGGCGCTGCAGTTT
CAACACGTAGATTACTATAAGATAATGGAGGAGAAAGCATTGTACTCAGG
GAATCAATTGACATGTGAAGTAGGAGGATTCCTCGGTTTAGTTATGGGGG
CTTCCATGCTTTCTTTTGTTGAGATTCTGGTATGTGGCGCATTGTATATG
ATgcgaaaaatgtataacaatgAACAAGAAGATGTTTAATTTCAAATTCG
ACAAGAAATAGAAAGTCGTTTCAAATACAATGTGACGTTGTTCCCATCAA
TAATGCAGGAGGATGATGGTcttgaaaagaaagaacaacAGGTCATCACT
CAAAACAACACTAAGGTGGAGTACAGCAATGACTTTACAGTCACCAGTGA
ACAAATGGAAGAAAGATATCCTTCATTATTCCCAAAGAaaGAGTACAGTC
CAGTTCAACGCCGAAAATTCTCAGCTGTTTTACCTAAAGACAAGAAAAAA
CGTGATAAAATCTTGAAGGAAAAGATCGATGGTTACATAGACGCGTTCAC
AGTACATGGCTTGACACGTGTTTTTAAAGCACCAAAACGTGAAGCCATAT
TATGGATGGTTGTGCTCTGTTTGGGAATTTTCCTGACCACCATCGTATTG
TATAAACTGTTAGCGAAATATTTCAAGTATGAGACTTATACTGAGATTAA
GTCCGTTGTGACGGATAAGAACTATTTCCCGAGTCTTTCCATATGCGAAT
TAAAGATGTTACAGAGAAATTATTTCTCGTATTGCGGTCAATCAATGAGT
CCTTTACGTGATGGGAAAAGTTCGAAACAGCCTTGCGATCATGCAAAGAT
CCCGACGTCGGCACATAATGCATCTATGATCGGGAATGGAACAAAATCGT
GGTCAAACGGCTTGTTTGATGTATTGTATTGCTACACATGGGATTCTAAA
GATTGTAACAGTTTATATCATTTCCGATCAAACCGGAATTTAAATCATTC
GTGTATCACATGGAATTATCAAGGAGATATGACTGATTTATACGGTCATG
TCGAAATCGGTATCAAATTCCACGCATGGGATGATAGAGAACcgaaaatt
tttgcttcaccGCATGATCCAAATCTCATTGAAATCGATTTAACCAAAAA
GGTTAATTTGGATGCACACAAGCTTTATGAGATCAAACTTGTGAAAACGG
AGGTTAAAAGGTTGCCAAATCCATACCCGTCCAACTGTTCCAGCCAACGA
GTGATGGATATTCTTCCCGGAGACTACAGTCGTCGAACCTGCATCGAATC
ATACAAGATGTTGAACGCTTACAAAGAGTGTGGTGACACTTTTGATTACG
TGCGACCACATATTCCGGAAAAAATAAAAGCTCAATACTCGAAGAATAGC
AGCGTTAAAGAGACACGTGCTTGTATCCGAAGGGCCGTTCAAAAGGAGCC
GGAAAAGGGCAGGTGCCCCTTTCCATGCCGAGAACTAGATCTTGGAATCA
GTTCGTCTTATAATGAACGTCATGGTCTAGCAAGCCAGTCAGGCCATGAT
GGCCCTCATGAATGGACCTATAACGTGGCGCTGCAGTTTCAACACGTAGA
TTACTATAAGATAATGGAGGAGAAAGCATTGTACTCAGGGAATCAATTGA
CATGTGAAGTAGGAGGATTCCTCGGTTTAGTTATGGGGGCTTCCATGCTT
TCTTTTGTTGAGATTCTGGTATGTGGCGCATTGTATATGATgcgaaaaat
gtataacaatgAACAAGAAGATGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063459-exon-scaffold_39-1491911889:315243..315442 | TCONS_00063459-exon-scaffold_39-1491911889:315243..315442 | Clytia hemisphaerica | exon |
| TCONS_00063459-exon-scaffold_39-1510915933:315243..315442 | TCONS_00063459-exon-scaffold_39-1510915933:315243..315442 | Clytia hemisphaerica | exon |
| TCONS_00063459-exon-scaffold_39-1575043694:315243..315442 | TCONS_00063459-exon-scaffold_39-1575043694:315243..315442 | Clytia hemisphaerica | exon |
| TCONS_00063459-exon-scaffold_39-1491911889:316361..317819 | TCONS_00063459-exon-scaffold_39-1491911889:316361..317819 | Clytia hemisphaerica | exon |
| TCONS_00063459-exon-scaffold_39-1510915933:316361..317819 | TCONS_00063459-exon-scaffold_39-1510915933:316361..317819 | Clytia hemisphaerica | exon |
| TCONS_00063459-exon-scaffold_39-1575043694:316361..317819 | TCONS_00063459-exon-scaffold_39-1575043694:316361..317819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:315243..317819 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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