TCONS_00063469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063469
Unique NameTCONS_00063469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063469 ID=TCONS_00063469|Name=TCONS_00063469|organism=Clytia hemisphaerica|type=transcript|length=1912bp
GGCATTTCTAAAAgacattttgatgcttttataAGATCCTGTAAAAAGCT
CTGTATGAGATAATGTCACGAGATTCTTAGCTTTAAATCAATGCGTGGTT
AAATATATGTATGCTATATCTATGTTGCTTGCATTTAAACAGATTTGAGA
CTGCTTTTTTGGGCATTCCCTCCCTATAACACAACCAACAGAAAGAGAGG
ATTTGGAGTTTGGTGGGTGTGTTCAACAGATTTGACCTAGAAGATTCAAC
AACTCAGTCATTAAGCTGAAAGAAAGAATATCTCTGGTGTTTCCACATCT
GGCGATGTTAGCCTATTGATAACCAATTAAAATAACTCATAAGCATTAAC
AACCCATCCAACTTAAGGCACATAAGTGATTGTCTGGTGAAAGTGAAGAA
CATAATATACTGACCGAAAGTCAACATTTTGAATCAAAAGTAGATCACAT
CAGATCAAAACAATGGAGAAGGAAGAGTCATTTGACATTGTAAATGAATC
GGACTACAATCTACTTAGACATCAAGTACCATGGCAATATCAGGAAAGTT
ATATCCTAACAGGTTATCGTAAATCTGGTATGTCGATATGGAATTGCATG
AAAACTTTGATTCAAACAAATTGTAACGAAACTTTAAACATATGGACACA
CTTTTGTCCAATTTTTCTGTTCGCATGGATTCTTATCGACTTCACACTCA
AAGAGTTTGTTATCGATGACCCTTTTTATTGGCCCTTATACGTATGTGTT
GTTGGTATGATGGGGTTTTGTATTATGAGTAGTCTGGCTCACACCTTTAA
TGCGCTATCTATGGACTCATTATACACGTGTTTCTATATGGACTATGCCT
TTATATCAATTTACTCGTCCACAAGCTGGTTGGCTTCATATCTGTATACT
CGTCCCTTAGATACAGACATACATTTACTGAATAATGCGCCATTTTTGGC
ATTTGTGAcgttgaaaatttgcttaatcTCTACTTTCCAATGTTGTTGCA
CGTTTCGGACGCACATGAAACTCGAACACGCTATCCGTGCATCTTCATTT
TTCGTACCGTGGTTGAATTGTGTATTCCCTTATATATACCGAGCTTTAAG
TTGCAAAAGCCCGATCGACTGTGACACATCATCAGTACCTTATTTTGGAG
GGCATGTTATCTTTATACTTATATGCGCCGTAACGATATCAACTCGTTTC
CCGGAGAGACTCTCGCCTGGAACTTTTGATTTCATCGGACAGAGCCATCA
AATTATGCATGTTTGTGCTATCTTTAGCTCTTATTTTCAAATGTTATGTA
TCAAAAACGAAATGCTGTTGCGTGAGGATGAGTTACGGATgactgaaatt
aacatacagtATTCGAAATATACTTTCCATTTTTTGGTAGTGGCAGTTGT
TCTTGATGTACTTACGGCGAATTTATTTcgatttatttcaaaaaattatt
attcaaaGACTAATAAAATTGAATGAAAGTGTATATATCATTGGTCGTTG
TCATGGGCCTAGAACTCGAGAGAAACACAGTTGACTCTCACTTATTCGAA
CGCGAACGTTGAAtcttttttggtcaaattacaCAGAGATTTGCATTATA
GAAACTATCTtgagagggtttctccttgacagGGACTTGAAACAAGTTCG
AATAAGTAAGATTTTACTGTACCTTCATGGTATGGTCTAGCTTTAACATT
TACAGAAAACGGTTGTTTGTAGGGCAAGGGGATTTTCTACATTTCTGAGG
TAATTTTATTCAGCTCAggttatttatttttgttttattgtagATAATTA
TCATAAGGACTAGAATAGTTTTAAAATGTACCTAGAGAGAACAATTTCTA
AGGTTTTATCATCATGATGCTTTTAATGTtgatttcaaaaagaaagaCTT
CCGGTAGTAAAG
Run BLAST on NCBI

protein sequence of TCONS_00063469-protein

>TCONS_00063469-protein ID=TCONS_00063469-protein|Name=TCONS_00063469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MEKEESFDIVNESDYNLLRHQVPWQYQESYILTGYRKSGMSIWNCMKTLI
QTNCNETLNIWTHFCPIFLFAWILIDFTLKEFVIDDPFYWPLYVCVVGMM
GFCIMSSLAHTFNALSMDSLYTCFYMDYAFISIYSSTSWLASYLYTRPLD
TDIHLLNNAPFLAFVTLKICLISTFQCCCTFRTHMKLEHAIRASSFFVPW
LNCVFPYIYRALSCKSPIDCDTSSVPYFGGHVIFILICAVTISTRFPERL
SPGTFDFIGQSHQIMHVCAIFSSYFQMLCIKNEMLLREDELRMTEINIQY
SKYTFHFLVVAVVLDVLTANLFRFISKNYYSKTNKIE
Run BLAST on NCBI

transcript from alignment at scaffold_39:239089..241408-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063469 ID=TCONS_00063469|Name=TCONS_00063469|organism=Clytia hemisphaerica|type=transcript|length=2320bp|location=Sequence derived from alignment at scaffold_39:239089..241408- (Clytia hemisphaerica)
GGCATTTCTAAAAGACATTTTGATGCTTTTATAAGATCCTGTAAAAAGCT
CTGTATGAGATAATGTCACGAGATTCTTAGCTTTAAATCAATGCGTGGTT
AAATATATGTATGCTATATCTATGTTGCTTGCATTTAAACAGATTTGAGA
CTGCTTTTTTGGGCATTCCCTCCCTATAACACAACCAACAGGTAAATATA
ATCTACATGTNCAATTTTTGGCCTGCACATACCGTCAGTCCGCAAACCCA
GTGCCCCCTCCGGGCTTTATACTCTTCAATAGTTTTTTATTTCGTACAGA
TCAAGCTTAGATTTTTGATAACTAAATGTGAAAATTTATATTTTTTGGTT
TGAAGGGTCTGTTAAAATATAACATTTAATACATTGGATTTGATTTCAAG
TATTTGATAAGATATATGAAAAAAAATTTTATTGAGGTTTTATGTTATCG
CTTATTTGGAAGGGTTAGATACATATACTATATATCTATAAAGATAAAAT
NGAGGTTTTATGTTATCGCTTATTTGGAAGGGTTAGATACATATACTATA
CATCTATAAAGATAAAATAACGTAACATTCATACCGTTTTTGCTTTTAGA
AAGAGAGGATTTGGAGTTTGGTGGGTGTGTTCAACAGATTTGACCTAGAA
GATTCAACAACTCAGTCATTAAGCTGAAAGAAAGAATATCTCTGGTGTTT
CCACATCTGGCGATGTTAGCCTATTGATAACCAATTAAAATAACTCATAA
GCATTAACAACCCATCCAACTTAAGGCACATAAGTGATTGTCTGGTGAAA
GTGAAGAACATAATATACTGACCGAAAGTCAACATTTTGAATCAAAAGTA
GATCACATCAGATCAAAACAATGGAGAAGGAAGAGTCATTTGACATTGTA
AATGAATCGGACTACAATCTACTTAGACATCAAGTACCATGGCAATATCA
GGAAAGTTATATCCTAACAGGTTATCGTAAATCTGGTATGTCGATATGGA
ATTGCATGAAAACTTTGATTCAAACAAATTGTAACGAAACTTTAAACATA
TGGACACACTTTTGTCCAATTTTTCTGTTCGCATGGATTCTTATCGACTT
CACACTCAAAGAGTTTGTTATCGATGACCCTTTTTATTGGCCCTTATACG
TATGTGTTGTTGGTATGATGGGGTTTTGTATTATGAGTAGTCTGGCTCAC
ACCTTTAATGCGCTATCTATGGACTCATTATACACGTGTTTCTATATGGA
CTATGCCTTTATATCAATTTACTCGTCCACAAGCTGGTTGGCTTCATATC
TGTATACTCGTCCCTTAGATACAGACATACATTTACTGAATAATGCGCCA
TTTTTGGCATTTGTGACGTTGAAAATTTGCTTAATCTCTACTTTCCAATG
TTGTTGCACGTTTCGGACGCACATGAAACTCGAACACGCTATCCGTGCAT
CTTCATTTTTCGTACCGTGGTTGAATTGTGTATTCCCTTATATATACCGA
GCTTTAAGTTGCAAAAGCCCGATCGACTGTGACACATCATCAGTACCTTA
TTTTGGAGGGCATGTTATCTTTATACTTATATGCGCCGTAACGATATCAA
CTCGTTTCCCGGAGAGACTCTCGCCTGGAACTTTTGATTTCATCGGACAG
AGCCATCAAATTATGCATGTTTGTGCTATCTTTAGCTCTTATTTTCAAAT
GTTATGTATCAAAAACGAAATGCTGTTGCGTGAGGATGAGTTACGGATGA
CTGAAATTAACATACAGTATTCGAAATATACTTTCCATTTTTTGGTAGTG
GCAGTTGTTCTTGATGTACTTACGGCGAATTTATTTCGATTTATTTCAAA
AAATTATTATTCAAAGACTAATAAAATTGAATGAAAGTGTATATATCATT
GGTCGTTGTCATGGGCCTAGAACTCGAGAGAAACACAGTTGACTCTCACT
TATTCGAACGCGAACGTTGAATCTTTTTTGGTCAAATTACACAGAGATTT
GCATTATAGAAACTATCTTGAGAGGGTTTCTCCTTGACAGGGACTTGAAA
CAAGTTCGAATAAGTAAGATTTTACTGTACCTTCATGGTATGGTCTAGCT
TTAACATTTACAGAAAACGGTTGTTTGTAGGGCAAGGGGATTTTCTACAT
TTCTGAGGTAATTTTATTCAGCTCAGGTTATTTATTTTTGTTTTATTGTA
GATAATTATCATAAGGACTAGAATAGTTTTAAAATGTACCTAGAGAGAAC
AATTTCTAAGGTTTTATCATCATGATGCTTTTAATGTTGATTTCAAAAAG
AAAGACTTCCGGTAGTAAAG

Coding sequence (CDS) from alignment at scaffold_39:239089..241408-

>TCONS_00063469 ID=TCONS_00063469|Name=TCONS_00063469|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_39:239089..241408- (Clytia hemisphaerica)
ATGGAGAAGGAAGAGTCATTTGACATTGTAAATGAATCGGACTACAATCT
ACTTAGACATCAAGTACCATGGCAATATCAGGAAAGTTATATCCTAACAG
GTTATCGTAAATCTGGTATGTCGATATGGAATTGCATGAAAACTTTGATT
CAAACAAATTGTAACGAAACTTTAAACATATGGACACACTTTTGTCCAAT
TTTTCTGTTCGCATGGATTCTTATCGACTTCACACTCAAAGAGTTTGTTA
TCGATGACCCTTTTTATTGGCCCTTATACGTATGTGTTGTTGGTATGATG
GGGTTTTGTATTATGAGTAGTCTGGCTCACACCTTTAATGCGCTATCTAT
GGACTCATTATACACGTGTTTCTATATGGACTATGCCTTTATATCAATTT
ACTCGTCCACAAGCTGGTTGGCTTCATATCTGTATACTCGTCCCTTAGAT
ACAGACATACATTTACTGAATAATGCGCCATTTTTGGCATTTGTGACGTT
GAAAATTTGCTTAATCTCTACTTTCCAATGTTGTTGCACGTTTCGGACGC
ACATGAAACTCGAACACGCTATCCGTGCATCTTCATTTTTCGTACCGTGG
TTGAATTGTGTATTCCCTTATATATACCGAGCTTTAAGTTGCAAAAGCCC
GATCGACTGTGACACATCATCAGTACCTTATTTTGGAGGGCATGTTATCT
TTATACTTATATGCGCCGTAACGATATCAACTCGTTTCCCGGAGAGACTC
TCGCCTGGAACTTTTGATTTCATCGGACAGAGCCATCAAATTATGCATGT
TTGTGCTATCTTTAGCTCTTATTTTCAAATGTTATGTATCAAAAACGAAA
TGCTGTTGCGTGAGGATGAGTTACGGATGACTGAAATTAACATACAGTAT
TCGAAATATACTTTCCATTTTTTGGTAGTGGCAGTTGTTCTTGATGTACT
TACGGCGAATTTATTTCGATTTATTTCAAAAAATTATTATTCAAAGACTA
ATAAAATTGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039779XLOC_039779Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063469-proteinTCONS_00063469-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063469-exon-scaffold_39-1575043694:241218..241408TCONS_00063469-exon-scaffold_39-1575043694:241218..241408Clytia hemisphaericaexon
TCONS_00063469-exon-scaffold_39-1575043694:239089..240809TCONS_00063469-exon-scaffold_39-1575043694:239089..240809Clytia hemisphaericaexon
TCONS_00063469-exon-scaffold_39-1510915933:241218..241408TCONS_00063469-exon-scaffold_39-1510915933:241218..241408Clytia hemisphaericaexon
TCONS_00063469-exon-scaffold_39-1510915933:239089..240809TCONS_00063469-exon-scaffold_39-1510915933:239089..240809Clytia hemisphaericaexon
TCONS_00063469-exon-scaffold_39-1491911889:241218..241408TCONS_00063469-exon-scaffold_39-1491911889:241218..241408Clytia hemisphaericaexon
TCONS_00063469-exon-scaffold_39-1491911889:239089..240809TCONS_00063469-exon-scaffold_39-1491911889:239089..240809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:239089..241408 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124995	0.12189	0.188701	0.276922	0	0	0.160701	0.250744	2.80882	1.04375	4.26343	5.6191	1.67646	2.89211	1.57331	1.38373	0.437889	0.769409	1.92665	2.41005	1.57108	2.12211	1.07488	1.36811	2.23669	0.958174	0.428482	0.36583	0.0693673	0.0706743
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004254AdipoR/HlyIII-related
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00063469 vs. Swiss-Prot (Human)
Match: PAQR5 (Membrane progestin receptor gamma OS=Homo sapiens GN=PAQR5 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 8.006e-37
Identity = 90/284 (31.69%), Postives = 140/284 (49.30%), Query Frame = 1 
Query:  523 QVPWQYQESYILTGYRKSGMSIWNCMKTLIQTNCNETLNIWTHFCPIFLFAWILIDFTLKEFVIDDPFYWPLYVCVVGMMGFCIMSSLAHTFNALSMDSLYTCFYMDYAFISIYSSTSWLASYLYTRPLDTDIHLLNNAPFLAFVTLKICLISTFQCCCTFRTHMK--LEHAIRASSFFVPWLNCVFPYIYRALSCKSPIDCDTSSVPYFGGHVIFILICAVTISTRFPERLSPGTFDFIGQSHQIMHVCAIFSSYFQMLCIKNEMLLREDELRMTEINIQYSK 1368
            Q+P  + E  IL GYR    S   C+ +L Q   NETLNIWTH  P + FAW  +       + +D + WP+ V +     + ++SS AHTF+++S ++ + C+++DY  ++++S  S +A   YT P D  +    +  ++A   L   L +   C   F    K  L   IR  +F  P+     P  YR             +  Y   H+I  L+ +   S   PERL+PG FD+IG SHQ+ HVC I +++ QM  I  +  LR++ L  T     +S+
Sbjct:   14 QIPQVFHEQGILFGYRHPQSSATACILSLFQMT-NETLNIWTHLLPFWFFAWRFVTALYMTDIKNDSYSWPMLVYMCTSCVYPLVSSCAHTFSSMSKNARHICYFLDYGAVNLFSLGSAIAYSAYTFP-DALMCTTFHDYYVALAVLNTILSTGLSCYSRFLEIQKPRLCKVIRVLAFAYPYTWDSLPIFYRLFLFPGE-SAQNEATSYHQKHMIMTLLASFLYSAHLPERLAPGRFDYIGHSHQLFHVCVILATHMQMEAILLDKTLRKEWLLATSKPFSFSQ 294
The following BLAST results are available for this feature:
BLAST of TCONS_00063469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAQR58.006e-3731.69Membrane progestin receptor gamma OS=Homo sapiens ... [more]
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