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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063471 ID=TCONS_00063471|Name=TCONS_00063471|organism=Clytia hemisphaerica|type=transcript|length=1630bpRun BLAST on NCBI protein sequence of TCONS_00063471-protein >TCONS_00063471-protein ID=TCONS_00063471-protein|Name=TCONS_00063471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp FVFNSSPKCLQKRQLNIKEIIKRTQQLSYLPSTKKQGCAYRGKCKETVFKRun BLAST on NCBI transcript from alignment at scaffold_39:335211..380486- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063471 ID=TCONS_00063471|Name=TCONS_00063471|organism=Clytia hemisphaerica|type=transcript|length=45276bp|location=Sequence derived from alignment at scaffold_39:335211..380486- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_39:335211..380486- >TCONS_00063471 ID=TCONS_00063471|Name=TCONS_00063471|organism=Clytia hemisphaerica|type=CDS|length=19404bp|location=Sequence derived from alignment at scaffold_39:335211..380486- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063471 vs. Swiss-Prot (Human)
Match: CTSRG (Cation channel sperm-associated protein subunit gamma OS=Homo sapiens GN=CATSPERG PE=2 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 2.059e-19 Identity = 93/381 (24.41%), Postives = 160/381 (41.99%), Query Frame = 1
Query: 253 KDQKRLLPKKWRNLLEVT-SSDLWIEITDLVEHAHELLVYDNYPDKISLDRGQCAHFELMVYLQSNTDQAGWIIEDISLHFQSTSSKDI------------NIQSEKIIDYIDNSVNFKVKFCDSGIQRQVQPPGYTHVLNHVVLQVQPSPSECIGNRYV----QTTIPLQVDHGCPSSRRINID------YQRTKENVNHFCD------EEYCFHFEKIFDAYLTITDDATQEIKRFLGKKNLTFIGGGPEANQIRPFTEQEIRDYNMELGSRSKLIWAIS------ENAY----------SWLCGSASPCGGIAPVFPSSPYYYLNLRFNNS--DTDTNCDYSFEFLIKIHGMPPDGIYP--SMFVVFLCLGIMGTVVV 1248
+D L WR+ V+ D + +I +L E A+EL P++I LD+G F + + Q ++ + ++ FQ S D+ +++ E +I+ NSV F + D + G+ + + + V S C ++ Q + + V GCP +R+ D Y R K H+ D E CF F IF + I D T + F G L +GGGP + ++ ++E EI +N L + LIW ++A+ WLC +PC P +P ++ + +N DT T C+Y FL+ IHG+P + P ++F++ + + +V+
Sbjct: 719 QDYYFFLASNWRSAGGVSIEMDSYEKIYNL-ESAYEL------PERIFLDKGTEYSFAIFLSAQGHSFRTQ---SELGTAFQLHSQVDVGVVLADPGCIEASVKQEVLIN--RNSVLFSITLKDKKLCYDQGISGHHLMETSMTVNVVGSSGLCFQETHLGPHMQGNLMVPVFIGCPPGKRLAFDITYTLEYSRLKNK--HYFDCVNVNPEMPCFLFRDIFYPFFLIQDLVTGDSGSFQGSYVLLVVGGGPTLDSLKDYSEDEIYRFNSPLDKTNSLIWTTRTTRTTKDSAFHIMSHESPGIEWLCLENAPCYDNVPQGIFAPEFFFKVLVSNRGVDTSTYCNYQLTFLLHIHGLP---LSPKRALFIIMVSASVFVGLVI 1082 The following BLAST results are available for this feature:
BLAST of TCONS_00063471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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