TCONS_00063487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063487
Unique NameTCONS_00063487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063487 ID=TCONS_00063487|Name=TCONS_00063487|organism=Clytia hemisphaerica|type=transcript|length=341bp
CTGCGGTCAGATTCCAATTTTGACAAGAGTACGTTAGTCTACTTCTAACA
AAGGAGTTAAAAAATTTAACTCTTGTAGATGGATGAATTCCATGATTCTG
ATGGAGGTTTGTCATACTTGCGAATTTTCCAAGTGCCATCTGAATGTGAT
AGTTGATTTCAATGTCTCCGGTATTAGGCGTATTTGGAGAGATGGGCGAA
CCAAGATATTTGAACTGGCCTGAATTTTTCAACGGGAAATACGCGAATAT
CAATGATGCTATCAGGATAGTTTGTCTCGAGGTAGCAGTGATTGAGAATC
ATCGTCTCGGTTTTGGTTTCGTTCATTCGAAGACCAAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_39:136964..137304

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063487 ID=TCONS_00063487|Name=TCONS_00063487|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at scaffold_39:136964..137304 (Clytia hemisphaerica)
AAATTTGGTCTTCGAATGAACGAAACCAAAACCGAGACGATGATTCTCAA
TCACTGCTACCTCGAGACAAACTATCCTGATAGCATCATTGATATTCGCG
TATTTCCCGTTGAAAAATTCAGGCCAGTTCAAATATCTTGGTTCGCCCAT
CTCTCCAAATACGCCTAATACCGGAGACATTGAAATCAACTATCACATTC
AGATGGCACTTGGAAAATTCGCAAGTATGACAAACCTCCATCAGAATCAT
GGAATTCATCCATCTACAAGAGTTAAATTTTTTAACTCCTTTGTTAGAAG
TAGACTAACGTACTCTTGTCAAAATTGGAATCTGACCGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039794XLOC_039794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063487-exon-scaffold_39-1491911889:136964..137304TCONS_00063487-exon-scaffold_39-1491911889:136964..137304Clytia hemisphaericaexon
TCONS_00063487-exon-scaffold_39-1510915933:136964..137304TCONS_00063487-exon-scaffold_39-1510915933:136964..137304Clytia hemisphaericaexon
TCONS_00063487-exon-scaffold_39-1575043694:136964..137304TCONS_00063487-exon-scaffold_39-1575043694:136964..137304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:136964..137304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155569	0	0.40743	0	0	0	0	0	0	0	0.544598	1.25582	0.313277	0.262538	0.548767	0.313905	0	0.894541	0.511302	1.58148	1.4919	2.00273	0.453902	0.0773433	0	0.257538	1.46255	1.23303	0.903923	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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